Wall clock time and date at job start Tue Mar 31 2020 20:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86800 * 120.00121 * 2 1 4 4 H 1.48499 * 109.47095 * 275.41123 * 3 2 1 5 5 H 1.48496 * 109.47472 * 35.41266 * 3 2 1 6 6 H 1.48498 * 109.47114 * 155.41621 * 3 2 1 7 7 C 1.39943 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00018 * 341.72593 * 7 2 1 9 9 C 1.41440 * 119.99765 * 161.72357 * 7 2 1 10 10 C 1.40784 * 120.17773 * 330.20061 * 9 7 2 11 11 C 1.37713 * 120.04031 * 180.02562 * 10 9 7 12 12 C 1.38378 * 120.40926 * 359.97438 * 11 10 9 13 13 C 1.39878 * 120.36054 * 359.97438 * 12 11 10 14 14 C 1.47882 * 120.02772 * 180.02562 * 13 12 11 15 15 O 1.21542 * 120.00197 * 180.02562 * 14 13 12 16 16 N 1.34785 * 119.99859 * 0.02562 * 14 13 12 17 17 C 1.46498 * 120.00071 * 179.97438 * 16 14 13 18 18 H 1.08999 * 109.71414 * 324.44817 * 17 16 14 19 19 C 1.53233 * 109.64269 * 203.91636 * 17 16 14 20 20 C 1.52713 * 108.41641 * 170.46905 * 19 17 16 21 21 C 1.50741 * 110.58723 * 51.28930 * 20 19 17 22 22 N 1.32785 * 117.48819 * 162.41366 * 21 20 19 23 23 C 1.31903 * 122.34618 * 179.34896 * 22 21 20 24 24 O 1.35676 * 119.76548 * 180.02562 * 23 22 21 25 25 C 1.38928 * 120.46242 * 359.97438 * 23 22 21 26 26 C 1.38138 * 118.79240 * 0.15312 * 25 23 22 27 27 C 1.37487 * 122.34579 * 342.00378 * 21 20 19 28 28 C 1.50514 * 122.83518 * 0.81685 * 27 21 20 29 29 C 1.39031 * 119.94730 * 0.28028 * 13 12 11 30 30 H 0.96997 * 119.99708 * 359.97438 * 1 2 3 31 31 H 1.07997 * 119.98299 * 359.97226 * 10 9 7 32 32 H 1.07999 * 119.79673 * 180.02562 * 11 10 9 33 33 H 1.07997 * 119.81625 * 180.02562 * 12 11 10 34 34 H 0.96998 * 119.99905 * 359.97438 * 16 14 13 35 35 H 1.09003 * 109.68826 * 50.73278 * 19 17 16 36 36 H 1.09002 * 109.70363 * 290.21575 * 19 17 16 37 37 H 1.08994 * 109.25370 * 291.00542 * 20 19 17 38 38 H 1.09000 * 109.25643 * 171.57116 * 20 19 17 39 39 H 0.96707 * 113.99900 * 269.97625 * 24 23 22 40 40 H 1.08002 * 120.60443 * 180.17043 * 25 23 22 41 41 H 1.08006 * 120.51951 * 179.97438 * 26 25 23 42 42 H 1.09002 * 109.25547 * 102.62078 * 28 27 21 43 43 H 1.09004 * 109.25456 * 222.09475 * 28 27 21 44 44 H 1.08002 * 120.19962 * 179.70487 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3755 2.1124 -1.3938 5 1 1.5017 2.6170 0.8112 6 1 3.5924 1.4098 0.5825 7 6 2.0079 -1.2120 0.0005 8 1 1.5087 -2.1235 0.2942 9 6 3.3688 -1.2430 -0.3836 10 6 3.8624 -0.3110 -1.3161 11 6 5.1878 -0.3441 -1.6885 12 6 6.0429 -1.2900 -1.1510 13 6 5.5708 -2.2234 -0.2223 14 6 6.4912 -3.2307 0.3479 15 8 6.0804 -4.0418 1.1544 16 7 7.7858 -3.2492 -0.0268 17 6 8.6978 -4.2466 0.5384 18 1 8.4349 -4.4374 1.5789 19 6 10.1389 -3.7324 0.4558 20 6 11.0339 -4.6737 1.2590 21 6 10.8082 -6.1044 0.8415 22 7 11.7373 -6.9934 1.1730 23 6 11.6313 -8.2722 0.8674 24 8 12.6123 -9.1354 1.2326 25 6 10.5219 -8.7414 0.1753 26 6 9.5363 -7.8444 -0.1884 27 6 9.6876 -6.5011 0.1508 28 6 8.6022 -5.5438 -0.2626 29 6 4.2342 -2.2069 0.1602 30 1 -0.4849 0.8400 0.0004 31 1 3.2011 0.4300 -1.7404 32 1 5.5624 0.3730 -2.4039 33 1 7.0807 -1.3070 -1.4495 34 1 8.1136 -2.6021 -0.6708 35 1 10.1947 -2.7273 0.8738 36 1 10.4640 -3.7156 -0.5845 37 1 10.8058 -4.5686 2.3196 38 1 12.0776 -4.4099 1.0886 39 1 13.3120 -9.2375 0.5729 40 1 10.4315 -9.7884 -0.0737 41 1 8.6622 -8.1788 -0.7275 42 1 8.7062 -5.3192 -1.3242 43 1 7.6302 -6.0045 -0.0862 44 1 3.8643 -2.9287 0.8733 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188682589.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:53 Heat of formation + Delta-G solvation = -33.533893 kcal Electronic energy + Delta-G solvation = -27545.037780 eV Core-core repulsion = 23619.408686 eV Total energy + Delta-G solvation = -3925.629094 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.15200 -39.65603 -38.21612 -37.33835 -36.11755 -33.82862 -33.69844 -33.09002 -30.75653 -30.28557 -30.08829 -28.59226 -25.30193 -24.55088 -23.78478 -22.92342 -22.46270 -20.79682 -20.36820 -20.03250 -18.76812 -17.92172 -17.27025 -16.46453 -16.34075 -16.21419 -15.57882 -15.37095 -14.72542 -14.54441 -14.41370 -14.30993 -13.97338 -13.73545 -13.65566 -13.48339 -13.17460 -12.79813 -12.78274 -12.60251 -12.29703 -12.07379 -11.90381 -11.75185 -11.62398 -11.25413 -11.13335 -11.07036 -10.81824 -10.57935 -10.04599 -9.98472 -9.76460 -9.68806 -9.47109 -9.18488 -8.98685 -8.85150 -7.91200 -7.80029 -7.03927 -4.58768 0.69064 0.89893 1.86630 2.47900 3.02634 3.10595 3.14969 3.22913 3.33916 3.44039 3.56227 3.90011 4.14992 4.39193 4.43545 4.51852 4.57157 4.61523 4.84205 4.95646 5.08323 5.21306 5.22950 5.28771 5.31522 5.40677 5.53708 5.58454 5.63532 5.74090 5.80635 5.86542 5.98174 6.02095 6.04834 6.23361 6.35546 6.59819 6.62595 6.67582 6.94094 7.15239 7.17121 7.36344 7.45724 7.63637 7.71006 7.74954 7.96661 8.24663 8.49332 8.63432 8.68578 9.98145 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.030314 B = 0.002092 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.437010 B =13382.412909 C =13823.454833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.083 3.917 3 Si 0.911 3.089 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.244 1.244 7 C -0.442 4.442 8 H 0.094 0.906 9 C 0.081 3.919 10 C -0.221 4.221 11 C -0.083 4.083 12 C -0.217 4.217 13 C -0.109 4.109 14 C 0.565 3.435 15 O -0.545 6.545 16 N -0.730 5.730 17 C 0.147 3.853 18 H 0.092 0.908 19 C -0.127 4.127 20 C -0.064 4.064 21 C 0.156 3.844 22 N -0.507 5.507 23 C 0.308 3.692 24 O -0.483 6.483 25 C -0.188 4.188 26 C -0.059 4.059 27 C -0.124 4.124 28 C -0.089 4.089 29 C -0.136 4.136 30 H 0.287 0.713 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.401 0.599 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.398 0.602 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.463 -8.925 -3.390 23.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.137 4.137 3 Si 0.738 3.262 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.167 1.167 7 C -0.470 4.470 8 H 0.112 0.888 9 C 0.078 3.922 10 C -0.241 4.241 11 C -0.101 4.101 12 C -0.237 4.237 13 C -0.112 4.112 14 C 0.355 3.645 15 O -0.423 6.423 16 N -0.383 5.383 17 C 0.042 3.958 18 H 0.111 0.889 19 C -0.165 4.165 20 C -0.103 4.103 21 C 0.021 3.979 22 N -0.226 5.226 23 C 0.127 3.873 24 O -0.290 6.290 25 C -0.209 4.209 26 C -0.085 4.085 27 C -0.127 4.127 28 C -0.128 4.128 29 C -0.156 4.156 30 H 0.097 0.903 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.237 0.763 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.255 0.745 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.102 0.898 43 H 0.106 0.894 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 21.291 -9.264 -1.814 23.290 hybrid contribution -0.032 0.597 -1.243 1.379 sum 21.259 -8.668 -3.057 23.161 Atomic orbital electron populations 1.69690 1.08106 1.30429 1.34359 1.26182 0.94770 1.01797 0.90943 0.86301 0.81377 0.79698 0.78863 1.19550 1.21633 1.16684 1.19527 0.92936 0.96332 1.38169 0.88838 1.17707 0.93168 0.91086 0.90225 1.21177 0.95702 1.04297 1.02920 1.20516 0.93753 0.97322 0.98558 1.20376 0.98009 1.00772 1.04546 1.19410 0.94216 0.97080 1.00474 1.18815 0.81474 0.83810 0.80363 1.90704 1.76581 1.40779 1.34266 1.45969 1.09488 1.35308 1.47488 1.20803 0.88667 0.87521 0.98851 0.88946 1.21859 0.93566 0.99651 1.01460 1.20335 1.01229 0.87776 1.00926 1.20766 0.88708 0.94980 0.93473 1.66949 1.31929 1.02771 1.20947 1.19002 0.89325 0.86173 0.92770 1.84801 1.36309 1.60120 1.47787 1.22063 0.95988 1.01685 1.01140 1.21573 0.98298 0.92064 0.96557 1.20456 0.96628 0.95219 1.00362 1.20863 0.96939 0.94365 1.00652 1.21269 0.91085 1.01887 1.01389 0.90283 0.87903 0.88294 0.88577 0.76259 0.89648 0.90703 0.89194 0.89055 0.74455 0.84170 0.84117 0.89817 0.89419 0.86683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.86 13.93 55.55 0.77 -20.09 16 2 C 0.08 2.11 5.40 -17.34 -0.09 2.01 16 3 Si 0.91 20.02 24.52 -169.99 -4.17 15.85 16 4 H -0.27 -5.67 6.71 56.52 0.38 -5.29 16 5 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.24 -5.48 6.86 56.52 0.39 -5.09 16 7 C -0.44 -11.68 9.57 -37.73 -0.36 -12.04 16 8 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 9 C 0.08 2.00 5.10 -106.87 -0.55 1.46 16 10 C -0.22 -5.03 7.17 -38.81 -0.28 -5.31 16 11 C -0.08 -1.63 10.01 -39.72 -0.40 -2.03 16 12 C -0.22 -3.97 9.55 -38.92 -0.37 -4.34 16 13 C -0.11 -2.21 5.87 -105.04 -0.62 -2.83 16 14 C 0.57 10.34 7.74 -12.31 -0.10 10.25 16 15 O -0.55 -11.64 16.01 5.33 0.09 -11.55 16 16 N -0.73 -9.64 5.05 -54.74 -0.28 -9.91 16 17 C 0.15 1.66 2.47 -67.94 -0.17 1.49 16 18 H 0.09 1.24 7.57 -51.93 -0.39 0.85 16 19 C -0.13 -1.04 5.45 -26.76 -0.15 -1.18 16 20 C -0.06 -0.56 5.91 -28.01 -0.17 -0.73 16 21 C 0.16 1.69 6.62 -82.43 -0.55 1.14 16 22 N -0.51 -6.03 10.21 -9.58 -0.10 -6.13 16 23 C 0.31 3.26 7.75 -17.27 -0.13 3.13 16 24 O -0.48 -4.31 13.56 -18.73 -0.25 -4.56 16 25 C -0.19 -1.69 10.06 -39.36 -0.40 -2.09 16 26 C -0.06 -0.55 9.74 -39.20 -0.38 -0.93 16 27 C -0.12 -1.30 5.74 -104.57 -0.60 -1.90 16 28 C -0.09 -0.96 5.27 -28.10 -0.15 -1.11 16 29 C -0.14 -3.18 9.34 -38.44 -0.36 -3.54 16 30 H 0.29 6.72 8.30 -40.82 -0.34 6.38 16 31 H 0.10 2.32 4.73 -52.49 -0.25 2.08 16 32 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 33 H 0.10 1.37 6.38 -52.49 -0.33 1.04 16 34 H 0.40 4.40 6.62 -40.82 -0.27 4.13 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.40 1.44 9.06 45.56 0.41 1.86 16 40 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.14 1.04 8.06 -52.48 -0.42 0.61 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.09 1.10 8.13 -51.93 -0.42 0.68 16 44 H 0.12 2.76 7.64 -52.49 -0.40 2.36 16 LS Contribution 364.00 15.07 5.49 5.49 Total: -1.00 -31.47 364.00 -8.88 -40.36 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -4.63 Total: 9.09 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -5.80 Total: -18.54 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.40 Total: -36.13 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.17 Total: -16.11 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.17 Total: 15.85 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.47 -8.88 -40.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188682589.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.822 kcal (2) G-P(sol) polarization free energy of solvation -31.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds