Wall clock time and date at job start Tue Mar 31 2020 20:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86800 * 120.00121 * 2 1 4 4 H 1.48499 * 109.47095 * 275.41123 * 3 2 1 5 5 H 1.48496 * 109.47472 * 35.41266 * 3 2 1 6 6 H 1.48498 * 109.47114 * 155.41621 * 3 2 1 7 7 C 1.39943 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00018 * 341.72593 * 7 2 1 9 9 C 1.41440 * 119.99765 * 161.72357 * 7 2 1 10 10 C 1.40784 * 120.17773 * 330.20061 * 9 7 2 11 11 C 1.37713 * 120.04031 * 180.02562 * 10 9 7 12 12 C 1.38378 * 120.40926 * 359.97438 * 11 10 9 13 13 C 1.39878 * 120.36054 * 359.97438 * 12 11 10 14 14 C 1.47882 * 120.02772 * 180.02562 * 13 12 11 15 15 O 1.21542 * 120.00197 * 180.02562 * 14 13 12 16 16 N 1.34785 * 119.99859 * 0.02562 * 14 13 12 17 17 C 1.46498 * 120.00071 * 179.97438 * 16 14 13 18 18 H 1.08999 * 109.71414 * 324.44817 * 17 16 14 19 19 C 1.53233 * 109.64269 * 203.91636 * 17 16 14 20 20 C 1.52713 * 108.41641 * 170.46905 * 19 17 16 21 21 C 1.50741 * 110.58723 * 51.28930 * 20 19 17 22 22 N 1.32785 * 117.48819 * 162.41366 * 21 20 19 23 23 C 1.31903 * 122.34618 * 179.34896 * 22 21 20 24 24 O 1.35676 * 119.76548 * 180.02562 * 23 22 21 25 25 C 1.38928 * 120.46242 * 359.97438 * 23 22 21 26 26 C 1.38138 * 118.79240 * 0.15312 * 25 23 22 27 27 C 1.37487 * 122.34579 * 342.00378 * 21 20 19 28 28 C 1.50514 * 122.83518 * 0.81685 * 27 21 20 29 29 C 1.39031 * 119.94730 * 0.28028 * 13 12 11 30 30 H 0.96997 * 119.99708 * 359.97438 * 1 2 3 31 31 H 1.07997 * 119.98299 * 359.97226 * 10 9 7 32 32 H 1.07999 * 119.79673 * 180.02562 * 11 10 9 33 33 H 1.07997 * 119.81625 * 180.02562 * 12 11 10 34 34 H 0.96998 * 119.99905 * 359.97438 * 16 14 13 35 35 H 1.09003 * 109.68826 * 50.73278 * 19 17 16 36 36 H 1.09002 * 109.70363 * 290.21575 * 19 17 16 37 37 H 1.08994 * 109.25370 * 291.00542 * 20 19 17 38 38 H 1.09000 * 109.25643 * 171.57116 * 20 19 17 39 39 H 0.96707 * 113.99900 * 269.97625 * 24 23 22 40 40 H 1.08002 * 120.60443 * 180.17043 * 25 23 22 41 41 H 1.08006 * 120.51951 * 179.97438 * 26 25 23 42 42 H 1.09002 * 109.25547 * 102.62078 * 28 27 21 43 43 H 1.09004 * 109.25456 * 222.09475 * 28 27 21 44 44 H 1.08002 * 120.19962 * 179.70487 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3755 2.1124 -1.3938 5 1 1.5017 2.6170 0.8112 6 1 3.5924 1.4098 0.5825 7 6 2.0079 -1.2120 0.0005 8 1 1.5087 -2.1235 0.2942 9 6 3.3688 -1.2430 -0.3836 10 6 3.8624 -0.3110 -1.3161 11 6 5.1878 -0.3441 -1.6885 12 6 6.0429 -1.2900 -1.1510 13 6 5.5708 -2.2234 -0.2223 14 6 6.4912 -3.2307 0.3479 15 8 6.0804 -4.0418 1.1544 16 7 7.7858 -3.2492 -0.0268 17 6 8.6978 -4.2466 0.5384 18 1 8.4349 -4.4374 1.5789 19 6 10.1389 -3.7324 0.4558 20 6 11.0339 -4.6737 1.2590 21 6 10.8082 -6.1044 0.8415 22 7 11.7373 -6.9934 1.1730 23 6 11.6313 -8.2722 0.8674 24 8 12.6123 -9.1354 1.2326 25 6 10.5219 -8.7414 0.1753 26 6 9.5363 -7.8444 -0.1884 27 6 9.6876 -6.5011 0.1508 28 6 8.6022 -5.5438 -0.2626 29 6 4.2342 -2.2069 0.1602 30 1 -0.4849 0.8400 0.0004 31 1 3.2011 0.4300 -1.7404 32 1 5.5624 0.3730 -2.4039 33 1 7.0807 -1.3070 -1.4495 34 1 8.1136 -2.6021 -0.6708 35 1 10.1947 -2.7273 0.8738 36 1 10.4640 -3.7156 -0.5845 37 1 10.8058 -4.5686 2.3196 38 1 12.0776 -4.4099 1.0886 39 1 13.3120 -9.2375 0.5729 40 1 10.4315 -9.7884 -0.0737 41 1 8.6622 -8.1788 -0.7275 42 1 8.7062 -5.3192 -1.3242 43 1 7.6302 -6.0045 -0.0862 44 1 3.8643 -2.9287 0.8733 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188682589.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:51 Heat of formation + Delta-G solvation = -57.504786 kcal Electronic energy + Delta-G solvation = -27546.077236 eV Core-core repulsion = 23619.408686 eV Total energy + Delta-G solvation = -3926.668550 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.94037 -40.99233 -39.32950 -38.68124 -37.08308 -35.58446 -34.57883 -34.18593 -32.41039 -31.74288 -31.00538 -29.59737 -27.08832 -25.50015 -24.83738 -23.70481 -23.62482 -22.44918 -21.52367 -21.27306 -19.66673 -19.31528 -18.20981 -17.93401 -17.47687 -17.13812 -16.93834 -16.52756 -16.33043 -15.65287 -15.48060 -15.38962 -15.20923 -14.92106 -14.71026 -14.55478 -14.40336 -14.23818 -14.05767 -13.79770 -13.36093 -13.29413 -13.02122 -12.82263 -12.68880 -12.63807 -12.48846 -12.28709 -12.02652 -11.91754 -11.73918 -11.54339 -11.18094 -10.81070 -10.73074 -10.44787 -10.17549 -9.62979 -9.60274 -9.52980 -8.90701 -6.54286 -0.04271 0.16695 0.20742 0.76400 1.26132 1.42749 1.49374 1.97555 2.13349 2.14246 2.46163 2.66932 2.70046 3.44774 3.48401 3.61787 3.75016 3.81040 3.84837 3.96952 4.14394 4.24700 4.29159 4.38503 4.45393 4.48339 4.50494 4.60644 4.63907 4.77915 4.85991 4.91098 4.93348 4.94771 5.03063 5.14128 5.17518 5.22646 5.29894 5.44381 5.47304 5.57424 5.67817 5.74116 5.86460 6.13218 6.31825 6.62033 6.62657 6.68125 6.75323 6.91122 7.28363 8.18418 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.030314 B = 0.002092 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.437010 B =13382.412909 C =13823.454833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.043 3.957 3 Si 0.969 3.031 4 H -0.246 1.246 5 H -0.279 1.279 6 H -0.250 1.250 7 C -0.489 4.489 8 H 0.048 0.952 9 C 0.064 3.936 10 C -0.225 4.225 11 C -0.083 4.083 12 C -0.179 4.179 13 C -0.112 4.112 14 C 0.564 3.436 15 O -0.585 6.585 16 N -0.702 5.702 17 C 0.144 3.856 18 H 0.066 0.934 19 C -0.113 4.113 20 C -0.063 4.063 21 C 0.145 3.855 22 N -0.533 5.533 23 C 0.299 3.701 24 O -0.493 6.493 25 C -0.187 4.187 26 C -0.063 4.063 27 C -0.136 4.136 28 C -0.081 4.081 29 C -0.168 4.168 30 H 0.295 0.705 31 H 0.105 0.895 32 H 0.148 0.852 33 H 0.155 0.845 34 H 0.418 0.582 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.419 0.581 40 H 0.164 0.836 41 H 0.157 0.843 42 H 0.101 0.899 43 H 0.063 0.937 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.072 -7.444 -5.701 27.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.171 4.171 3 Si 0.791 3.209 4 H -0.171 1.171 5 H -0.206 1.206 6 H -0.174 1.174 7 C -0.519 4.519 8 H 0.066 0.934 9 C 0.061 3.939 10 C -0.244 4.244 11 C -0.101 4.101 12 C -0.198 4.198 13 C -0.116 4.116 14 C 0.354 3.646 15 O -0.466 6.466 16 N -0.355 5.355 17 C 0.039 3.961 18 H 0.085 0.915 19 C -0.151 4.151 20 C -0.101 4.101 21 C 0.010 3.990 22 N -0.252 5.252 23 C 0.118 3.882 24 O -0.303 6.303 25 C -0.207 4.207 26 C -0.089 4.089 27 C -0.139 4.139 28 C -0.120 4.120 29 C -0.189 4.189 30 H 0.105 0.895 31 H 0.123 0.877 32 H 0.166 0.834 33 H 0.172 0.828 34 H 0.257 0.743 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.103 0.897 38 H 0.124 0.876 39 H 0.280 0.720 40 H 0.181 0.819 41 H 0.175 0.825 42 H 0.119 0.881 43 H 0.081 0.919 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 25.961 -7.789 -4.169 27.423 hybrid contribution -1.156 -0.090 -0.563 1.289 sum 24.806 -7.879 -4.732 26.454 Atomic orbital electron populations 1.69729 1.09358 1.31603 1.36962 1.26935 0.95450 1.04482 0.90272 0.85442 0.79571 0.75836 0.80041 1.17076 1.20577 1.17390 1.19458 0.94632 0.95655 1.42158 0.93400 1.17786 0.92474 0.92450 0.91169 1.21389 0.97563 1.03403 1.02069 1.21066 0.92229 0.98118 0.98692 1.21047 1.00480 0.97512 1.00762 1.19705 0.93241 0.97990 1.00617 1.18582 0.82872 0.83040 0.80142 1.90701 1.77614 1.42153 1.36115 1.45721 1.07660 1.35456 1.46630 1.20939 0.90093 0.87615 0.97435 0.91535 1.21811 0.90505 0.99928 1.02893 1.20380 1.02165 0.86831 1.00722 1.21083 0.88695 0.95810 0.93423 1.66977 1.32727 1.03575 1.21968 1.19283 0.90106 0.86129 0.92687 1.84748 1.36895 1.59660 1.49040 1.22288 0.95196 1.02793 1.00463 1.21848 0.98874 0.91836 0.96346 1.20479 0.96572 0.95706 1.01113 1.20733 0.95879 0.93892 1.01485 1.21191 0.93046 1.02206 1.02436 0.89500 0.87743 0.83430 0.82797 0.74298 0.88088 0.88502 0.89663 0.87610 0.71998 0.81887 0.82497 0.88100 0.91859 0.89512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.95 13.93 21.83 0.30 -46.64 16 2 C 0.04 2.30 5.40 85.26 0.46 2.76 16 3 Si 0.97 41.33 24.52 68.60 1.68 43.01 16 4 H -0.25 -9.48 6.71 99.48 0.67 -8.82 16 5 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 6 H -0.25 -10.79 6.86 99.48 0.68 -10.11 16 7 C -0.49 -28.05 9.57 23.47 0.22 -27.83 16 8 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 9 C 0.06 3.24 5.10 -21.32 -0.11 3.13 16 10 C -0.22 -9.80 7.17 22.77 0.16 -9.63 16 11 C -0.08 -2.83 10.01 22.18 0.22 -2.61 16 12 C -0.18 -5.57 9.55 22.70 0.22 -5.36 16 13 C -0.11 -4.38 5.87 -20.14 -0.12 -4.50 16 14 C 0.56 19.89 7.74 86.80 0.67 20.57 16 15 O -0.58 -25.55 16.01 -3.85 -0.06 -25.61 16 16 N -0.70 -16.09 5.05 -445.38 -2.25 -18.34 16 17 C 0.14 2.91 2.47 44.99 0.11 3.03 16 18 H 0.07 1.75 7.57 -2.39 -0.02 1.73 16 19 C -0.11 -1.41 5.45 30.58 0.17 -1.24 16 20 C -0.06 -0.94 5.91 29.77 0.18 -0.76 16 21 C 0.14 2.88 6.62 42.25 0.28 3.16 16 22 N -0.53 -11.93 10.21 -297.25 -3.03 -14.97 16 23 C 0.30 5.88 7.75 84.85 0.66 6.54 16 24 O -0.49 -8.02 13.56 -89.94 -1.22 -9.24 16 25 C -0.19 -3.03 10.06 22.41 0.23 -2.80 16 26 C -0.06 -1.08 9.74 22.52 0.22 -0.86 16 27 C -0.14 -2.62 5.74 -19.83 -0.11 -2.74 16 28 C -0.08 -1.59 5.27 29.71 0.16 -1.43 16 29 C -0.17 -8.20 9.34 23.01 0.21 -7.99 16 30 H 0.29 14.49 8.30 -92.71 -0.77 13.72 16 31 H 0.10 4.50 4.73 -2.91 -0.01 4.48 16 32 H 0.15 3.73 8.06 -2.91 -0.02 3.70 16 33 H 0.15 3.08 6.38 -2.91 -0.02 3.07 16 34 H 0.42 6.66 6.62 -92.71 -0.61 6.05 16 35 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.10 0.85 8.10 -2.39 -0.02 0.83 16 37 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.42 2.30 9.06 -74.05 -0.67 1.62 16 40 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 41 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 42 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.06 1.56 8.13 -2.38 -0.02 1.54 16 44 H 0.09 4.59 7.64 -2.91 -0.02 4.57 16 Total: -1.00 -75.60 364.00 -1.03 -76.63 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: -0.28 Total: 23.73 kcal Atomic # 6 Polarization: -32.39 SS G_CDS: 3.83 Total: -28.57 kcal Atomic # 7 Polarization: -74.97 SS G_CDS: -4.98 Total: -79.95 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -1.28 Total: -34.85 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 1.68 Total: 43.01 kcal Total: -75.60 -1.03 -76.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188682589.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.127 kcal (2) G-P(sol) polarization free energy of solvation -75.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds