Wall clock time and date at job start Tue Mar 31 2020 21:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.41263 * 126.70711 * 2 1 4 4 C 1.36825 * 103.84588 * 180.02562 * 3 2 1 5 5 C 1.47510 * 126.94510 * 180.02562 * 4 3 2 6 6 O 1.21584 * 120.00107 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00378 * 180.02562 * 5 4 3 8 8 C 1.46499 * 120.00343 * 180.02562 * 7 5 4 9 9 H 1.09002 * 110.27328 * 35.63622 * 8 7 5 10 10 C 1.53995 * 110.30895 * 273.55067 * 8 7 5 11 11 N 1.47912 * 107.05535 * 242.30824 * 10 8 7 12 12 C 1.46901 * 110.99681 * 214.15681 * 11 10 8 13 13 C 1.50701 * 109.46921 * 169.99814 * 12 11 10 14 14 O 1.21294 * 119.99849 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99795 * 179.97438 * 13 12 11 16 16 C 1.37101 * 119.99707 * 180.02562 * 15 13 12 17 17 H 1.08002 * 119.99704 * 359.97438 * 16 15 13 18 18 C 1.38941 * 119.99927 * 180.02562 * 16 15 13 19 19 N 1.31417 * 120.00180 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00273 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47117 * 59.99412 * 20 18 16 22 22 H 1.48498 * 109.47600 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47088 * 299.99811 * 20 18 16 24 24 C 1.48534 * 105.81750 * 334.66922 * 11 10 8 25 25 C 1.54594 * 110.30875 * 157.83294 * 8 7 5 26 26 H 1.09000 * 110.72653 * 22.51536 * 25 8 7 27 27 O 1.42900 * 110.72322 * 259.41178 * 25 8 7 28 28 O 1.34644 * 106.11236 * 0.26375 * 4 3 2 29 29 N 1.20889 * 111.46614 * 359.53022 * 28 4 3 30 30 H 1.09000 * 109.47110 * 89.99234 * 1 2 3 31 31 H 1.08996 * 109.47465 * 209.99781 * 1 2 3 32 32 H 1.09006 * 109.46576 * 329.99762 * 1 2 3 33 33 H 1.07998 * 128.07855 * 0.02562 * 3 2 1 34 34 H 0.97006 * 120.00122 * 0.02562 * 7 5 4 35 35 H 1.08997 * 109.92080 * 122.95760 * 10 8 7 36 36 H 1.08996 * 109.91547 * 1.65655 * 10 8 7 37 37 H 1.09002 * 109.47401 * 49.99842 * 12 11 10 38 38 H 1.09001 * 109.46874 * 289.99855 * 12 11 10 39 39 H 0.96995 * 120.00011 * 0.02562 * 15 13 12 40 40 H 0.97000 * 119.99884 * 180.02562 * 19 18 16 41 41 H 1.08997 * 110.66294 * 157.64845 * 24 11 10 42 42 H 1.09001 * 110.66815 * 280.76799 * 24 11 10 43 43 H 0.96705 * 114.00059 * 180.02562 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1325 0.0000 4 6 3.6121 0.6009 -0.0006 5 6 4.8871 1.3428 -0.0003 6 8 4.8830 2.5586 0.0010 7 7 6.0566 0.6730 -0.0015 8 6 7.3228 1.4097 -0.0007 9 1 7.2314 2.3171 0.5964 10 6 7.7395 1.7580 -1.4417 11 7 9.0252 1.0734 -1.6989 12 6 9.8819 1.8766 -2.5816 13 6 11.2630 1.2753 -2.6243 14 8 11.5093 0.2756 -1.9830 15 7 12.2242 1.8476 -3.3760 16 6 13.4806 1.3002 -3.4154 17 1 13.7001 0.4106 -2.8437 18 6 14.4716 1.8906 -4.1898 19 7 14.2046 2.9733 -4.8851 20 14 16.1833 1.1444 -4.2440 21 1 16.1016 -0.2444 -4.7634 22 1 17.0492 1.9560 -5.1366 23 1 16.7596 1.1279 -2.8755 24 6 9.6581 0.8873 -0.3681 25 6 8.4620 0.5183 0.5448 26 1 8.2091 -0.5369 0.4417 27 8 8.7448 0.8375 1.9087 28 8 3.4539 -0.7362 -0.0068 29 7 2.2847 -1.0433 -0.0007 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 2.0679 2.1746 0.0004 34 1 6.0599 -0.2971 -0.0029 35 1 7.8664 2.8359 -1.5414 36 1 6.9837 1.4039 -2.1426 37 1 9.9412 2.8963 -2.2009 38 1 9.4591 1.8879 -3.5862 39 1 12.0271 2.6468 -3.8891 40 1 14.8965 3.3852 -5.4260 41 1 10.3844 0.0750 -0.3978 42 1 10.1274 1.8121 -0.0325 43 1 9.4528 0.3063 2.2983 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191004749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:20 Heat of formation + Delta-G solvation = -37.443554 kcal Electronic energy + Delta-G solvation = -28647.310055 eV Core-core repulsion = 24310.662162 eV Total energy + Delta-G solvation = -4336.647892 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.39236 -40.44157 -39.12135 -37.85132 -35.83421 -35.40262 -34.64161 -33.88536 -32.49879 -31.36253 -30.20437 -29.14361 -28.11641 -26.64119 -24.67008 -23.91719 -23.22856 -21.66240 -20.89367 -20.39220 -19.33331 -18.72343 -18.17656 -17.93656 -17.64867 -16.68807 -16.37387 -16.06233 -15.40821 -15.19145 -14.88988 -14.76991 -14.45999 -14.23416 -13.97568 -13.85052 -13.79141 -13.60316 -13.24279 -13.19244 -13.10510 -12.63168 -12.51341 -12.16950 -11.84676 -11.76077 -11.58643 -11.37207 -11.03159 -10.74202 -10.69377 -10.52632 -10.46147 -10.26689 -10.13007 -10.06331 -9.54010 -9.50477 -8.48841 -8.10652 -7.98613 -6.46789 -3.88169 0.42093 1.62998 2.20399 2.63288 2.82261 3.16286 3.23072 3.26735 3.63930 3.73850 3.82667 4.02761 4.09952 4.30400 4.40840 4.54883 4.62586 4.79683 4.90442 4.93800 5.00191 5.07850 5.16266 5.20049 5.26837 5.28698 5.33256 5.56950 5.59173 5.70743 5.72763 5.83875 6.04979 6.11612 6.18782 6.43765 6.92130 7.02532 7.10784 7.49936 7.52319 7.58555 7.72162 7.99473 8.54786 9.11732 9.47239 9.98009 10.70528 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026950 B = 0.001953 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.705851 B =14334.395190 C =14630.799120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.009 3.991 3 C -0.151 4.151 4 C -0.080 4.080 5 C 0.607 3.393 6 O -0.509 6.509 7 N -0.700 5.700 8 C 0.142 3.858 9 H 0.110 0.890 10 C 0.025 3.975 11 N -0.490 5.490 12 C 0.035 3.965 13 C 0.441 3.559 14 O -0.584 6.584 15 N -0.558 5.558 16 C -0.302 4.302 17 H 0.103 0.897 18 C 0.024 3.976 19 N -0.899 5.899 20 Si 0.932 3.068 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.010 3.990 25 C 0.091 3.909 26 H 0.078 0.922 27 O -0.562 6.562 28 O 0.118 5.882 29 N -0.344 5.344 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.184 0.816 34 H 0.409 0.591 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.393 0.607 40 H 0.273 0.727 41 H 0.127 0.873 42 H 0.051 0.949 43 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.704 -2.641 9.722 24.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.148 4.148 3 C -0.173 4.173 4 C -0.146 4.146 5 C 0.390 3.610 6 O -0.385 6.385 7 N -0.351 5.351 8 C 0.037 3.963 9 H 0.127 0.873 10 C -0.104 4.104 11 N -0.215 5.215 12 C -0.096 4.096 13 C 0.227 3.773 14 O -0.469 6.469 15 N -0.194 5.194 16 C -0.431 4.431 17 H 0.121 0.879 18 C -0.178 4.178 19 N -0.540 5.540 20 Si 0.759 3.241 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.199 1.199 24 C -0.118 4.118 25 C 0.031 3.969 26 H 0.096 0.904 27 O -0.368 6.368 28 O 0.045 5.955 29 N -0.046 5.046 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.202 0.798 34 H 0.246 0.754 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.111 0.889 39 H 0.226 0.774 40 H 0.083 0.917 41 H 0.145 0.855 42 H 0.069 0.931 43 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -23.181 -3.668 9.657 25.378 hybrid contribution 1.247 1.020 -0.122 1.615 sum -21.934 -2.648 9.535 24.063 Atomic orbital electron populations 1.20220 0.85173 1.04188 1.03815 1.23685 0.99474 0.88272 1.03398 1.22883 0.89900 1.01812 1.02714 1.24228 0.97301 0.84058 1.09014 1.16498 0.81041 0.86216 0.77220 1.90896 1.86006 1.11772 1.49778 1.45925 1.04884 1.10879 1.73421 1.21847 0.81364 0.96311 0.96738 0.87255 1.23377 0.93826 0.98233 0.94974 1.64602 1.02396 1.43368 1.11173 1.22139 0.93689 0.95058 0.98729 1.19651 0.85730 0.87096 0.84871 1.90415 1.82015 1.27252 1.47240 1.41843 1.09761 1.26676 1.41145 1.19650 0.85706 1.10970 1.26794 0.87880 1.25282 1.00329 0.96058 0.96177 1.69605 1.35226 1.19735 1.29459 0.85903 0.81117 0.78835 0.78274 1.19857 1.20947 1.19890 1.24146 0.96488 1.03895 0.87238 1.23010 0.94142 0.97841 0.81935 0.90404 1.86448 1.59658 1.65607 1.25061 1.84989 1.21503 1.22077 1.66939 1.73752 0.89230 1.24303 1.17298 0.89769 0.90214 0.89629 0.79849 0.75446 0.92303 0.89532 0.92953 0.88888 0.77377 0.91720 0.85543 0.93092 0.76586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.47 36.00 0.38 0.01 16 2 C 0.01 0.08 7.31 -82.17 -0.60 -0.52 16 3 C -0.15 -1.30 10.92 -38.94 -0.43 -1.73 16 4 C -0.08 -0.80 7.29 -36.32 -0.26 -1.06 16 5 C 0.61 6.87 7.81 -12.48 -0.10 6.77 16 6 O -0.51 -7.18 16.61 5.29 0.09 -7.09 16 7 N -0.70 -7.17 5.02 -53.54 -0.27 -7.44 16 8 C 0.14 1.71 3.06 -66.57 -0.20 1.50 16 9 H 0.11 1.46 7.58 -51.93 -0.39 1.07 16 10 C 0.03 0.33 6.49 -2.75 -0.02 0.31 16 11 N -0.49 -7.73 5.26 -231.88 -1.22 -8.95 16 12 C 0.04 0.61 5.52 -4.97 -0.03 0.59 16 13 C 0.44 9.95 7.49 -10.98 -0.08 9.87 16 14 O -0.58 -14.65 13.10 5.55 0.07 -14.57 16 15 N -0.56 -13.75 5.29 -10.96 -0.06 -13.81 16 16 C -0.30 -8.18 9.68 -14.94 -0.14 -8.32 16 17 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 18 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 19 N -0.90 -24.05 13.05 55.50 0.72 -23.33 16 20 Si 0.93 20.62 29.55 -169.99 -5.02 15.60 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 C 0.01 0.16 5.03 -1.90 -0.01 0.15 16 25 C 0.09 1.09 4.14 -24.87 -0.10 0.98 16 26 H 0.08 0.83 7.74 -51.93 -0.40 0.42 16 27 O -0.56 -6.45 13.41 -35.23 -0.47 -6.93 16 28 O 0.12 1.20 11.04 15.54 0.17 1.37 16 29 N -0.34 -3.60 12.04 33.52 0.40 -3.20 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.18 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.41 3.40 8.17 -40.82 -0.33 3.07 16 35 H 0.06 0.76 7.57 -51.93 -0.39 0.37 16 36 H 0.09 1.09 7.92 -51.93 -0.41 0.68 16 37 H 0.05 0.84 7.81 -51.93 -0.41 0.43 16 38 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.39 9.32 7.90 -40.82 -0.32 8.99 16 40 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 41 H 0.13 2.28 5.97 -51.93 -0.31 1.97 16 42 H 0.05 0.83 8.02 -51.93 -0.42 0.42 16 43 H 0.39 2.99 9.12 45.56 0.42 3.40 16 LS Contribution 370.29 15.07 5.58 5.58 Total: -1.00 -32.88 370.29 -6.29 -39.18 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -4.60 Total: 14.53 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: -1.70 Total: 9.07 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.42 Total: -56.73 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.14 Total: -27.22 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.88 -6.29 -39.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191004749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.732 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds