Wall clock time and date at job start Tue Mar 31 2020 21:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.34260 * 126.52317 * 2 1 4 4 C 1.34051 * 108.22867 * 180.02562 * 3 2 1 5 5 N 1.29943 * 109.23887 * 359.72288 * 4 3 2 6 6 C 1.36061 * 108.47708 * 0.44355 * 5 4 3 7 7 C 1.47420 * 126.44712 * 179.81899 * 6 5 4 8 8 O 1.21615 * 120.00156 * 179.68909 * 7 6 5 9 9 N 1.34774 * 120.00223 * 359.69051 * 7 6 5 10 10 C 1.46499 * 120.00343 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.27328 * 35.63622 * 10 9 7 12 12 C 1.53995 * 110.30895 * 273.55067 * 10 9 7 13 13 N 1.47912 * 107.05535 * 242.30824 * 12 10 9 14 14 C 1.46901 * 110.99681 * 214.15681 * 13 12 10 15 15 C 1.50701 * 109.46921 * 169.99814 * 14 13 12 16 16 O 1.21294 * 119.99849 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99795 * 179.97438 * 15 14 13 18 18 C 1.37101 * 119.99707 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99704 * 359.97438 * 18 17 15 20 20 C 1.38941 * 119.99927 * 180.02562 * 18 17 15 21 21 N 1.31417 * 120.00180 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00273 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46986 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47457 * 119.99901 * 22 20 18 25 25 H 1.48501 * 109.47104 * 239.99973 * 22 20 18 26 26 C 1.48534 * 105.81750 * 334.66922 * 13 12 10 27 27 C 1.54594 * 110.30875 * 157.83294 * 10 9 7 28 28 H 1.09000 * 110.72653 * 22.51536 * 27 10 9 29 29 O 1.42900 * 110.72322 * 259.41178 * 27 10 9 30 30 H 1.08994 * 109.47232 * 269.96710 * 1 2 3 31 31 H 1.08993 * 109.46980 * 29.97516 * 1 2 3 32 32 H 1.09002 * 109.46615 * 149.97482 * 1 2 3 33 33 H 1.07996 * 125.38255 * 180.02562 * 4 3 2 34 34 H 0.97006 * 120.00122 * 0.02562 * 9 7 6 35 35 H 1.08997 * 109.92080 * 122.95760 * 12 10 9 36 36 H 1.08996 * 109.91547 * 1.65655 * 12 10 9 37 37 H 1.09002 * 109.47401 * 49.99842 * 14 13 12 38 38 H 1.09001 * 109.46874 * 289.99855 * 14 13 12 39 39 H 0.96995 * 120.00011 * 0.02562 * 17 15 14 40 40 H 0.97000 * 119.99884 * 180.02562 * 21 20 18 41 41 H 1.08997 * 110.66294 * 157.64845 * 26 13 12 42 42 H 1.09001 * 110.66815 * 280.76799 * 26 13 12 43 43 H 0.96705 * 114.00059 * 180.02562 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5788 0.6581 -0.0006 5 7 3.6002 -0.6411 0.0050 6 6 2.3171 -1.0936 -0.0006 7 6 1.8855 -2.5032 -0.0010 8 8 0.7004 -2.7763 -0.0006 9 7 2.8042 -3.4893 -0.0017 10 6 2.3753 -4.8901 -0.0014 11 1 1.4697 -5.0079 -0.5966 12 6 2.1343 -5.3750 1.4401 13 7 3.0943 -6.4709 1.6954 14 6 2.5093 -7.4879 2.5794 15 6 3.4096 -8.6957 2.6204 16 8 4.4377 -8.7079 1.9769 17 7 3.0729 -9.7620 3.3729 18 6 3.8923 -10.8606 3.4105 19 1 4.8073 -10.8717 2.8369 20 6 3.5450 -11.9600 4.1859 21 7 2.4313 -11.9467 4.8835 22 14 4.6617 -13.4566 4.2378 23 1 5.8446 -13.2218 3.3715 24 1 5.1090 -13.6922 5.6340 25 1 3.9187 -14.6457 3.7487 26 6 3.4169 -7.0449 0.3639 27 6 3.5017 -5.7962 -0.5493 28 1 4.4718 -5.3095 -0.4482 29 8 3.2524 -6.1445 -1.9126 30 1 -0.3633 -0.0006 1.0276 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3632 -0.8898 -0.5142 33 1 4.4489 1.2978 -0.0003 34 1 3.7495 -3.2715 -0.0015 35 1 1.1138 -5.7442 1.5421 36 1 2.3083 -4.5583 2.1406 37 1 1.5292 -7.7781 2.2008 38 1 2.4041 -7.0788 3.5842 39 1 2.2510 -9.7521 3.8877 40 1 2.1891 -12.7141 5.4250 41 1 4.3733 -7.5669 0.3917 42 1 2.6226 -7.7125 0.0301 43 1 3.9301 -6.7128 -2.3036 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191440579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:14 Heat of formation + Delta-G solvation = -77.412983 kcal Electronic energy + Delta-G solvation = -28866.286776 eV Core-core repulsion = 24527.905679 eV Total energy + Delta-G solvation = -4338.381097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.80386 -40.23722 -38.98299 -37.78744 -35.76004 -35.23626 -34.50092 -33.82199 -32.74204 -31.34414 -30.26072 -28.27856 -27.56648 -26.40583 -24.50300 -23.90361 -22.38471 -21.59474 -20.86926 -20.44874 -19.30696 -18.55042 -17.89674 -17.54932 -17.26107 -16.51541 -16.35922 -16.00052 -15.25315 -15.18637 -14.81617 -14.75665 -14.69034 -14.29311 -14.03606 -13.77056 -13.67648 -13.42885 -13.11785 -13.03510 -12.80540 -12.55026 -12.42318 -12.12380 -11.74975 -11.66449 -11.56859 -11.33783 -11.17495 -11.03245 -10.61844 -10.39801 -10.35317 -10.26002 -9.96344 -9.53230 -9.42286 -9.15194 -8.44198 -8.06885 -7.95309 -6.45178 -3.86301 0.74900 1.69741 2.17910 2.86913 3.05731 3.13973 3.25025 3.31733 3.67611 3.81274 3.85693 4.12665 4.25508 4.37128 4.43453 4.59782 4.80295 4.88355 5.01143 5.05562 5.10214 5.13823 5.22387 5.36916 5.43520 5.46237 5.63629 5.64661 5.73867 5.79209 5.85353 5.89535 6.10431 6.21493 6.32725 6.49997 6.99367 7.05953 7.16727 7.37390 7.52111 7.59137 7.96229 8.02030 8.56985 9.13891 9.49551 10.00418 10.72414 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025401 B = 0.002044 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.034530 B =13697.933304 C =13977.445264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.045 3.955 3 O -0.201 6.201 4 C 0.175 3.825 5 N -0.462 5.462 6 C -0.079 4.079 7 C 0.605 3.395 8 O -0.534 6.534 9 N -0.698 5.698 10 C 0.143 3.857 11 H 0.106 0.894 12 C 0.027 3.973 13 N -0.490 5.490 14 C 0.035 3.965 15 C 0.442 3.558 16 O -0.583 6.583 17 N -0.560 5.560 18 C -0.299 4.299 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.900 5.900 22 Si 0.930 3.070 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.282 1.282 26 C 0.011 3.989 27 C 0.091 3.909 28 H 0.076 0.924 29 O -0.562 6.562 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.256 0.744 34 H 0.410 0.590 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.393 0.607 40 H 0.272 0.728 41 H 0.126 0.874 42 H 0.050 0.950 43 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.230 24.023 -9.826 26.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.011 4.011 3 O -0.087 6.087 4 C -0.054 4.054 5 N -0.191 5.191 6 C -0.198 4.198 7 C 0.391 3.609 8 O -0.411 6.411 9 N -0.349 5.349 10 C 0.038 3.962 11 H 0.124 0.876 12 C -0.103 4.103 13 N -0.216 5.216 14 C -0.096 4.096 15 C 0.228 3.772 16 O -0.468 6.468 17 N -0.196 5.196 18 C -0.429 4.429 19 H 0.122 0.878 20 C -0.180 4.180 21 N -0.541 5.541 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.117 4.117 27 C 0.031 3.969 28 H 0.094 0.906 29 O -0.368 6.368 30 H 0.112 0.888 31 H 0.099 0.901 32 H 0.132 0.868 33 H 0.271 0.729 34 H 0.246 0.754 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.070 0.930 38 H 0.111 0.889 39 H 0.226 0.774 40 H 0.082 0.918 41 H 0.143 0.857 42 H 0.068 0.932 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -1.991 23.833 -9.761 25.831 hybrid contribution -0.158 -0.806 0.154 0.836 sum -2.149 23.027 -9.608 25.043 Atomic orbital electron populations 1.20627 0.82475 1.05493 1.04864 1.23791 0.95265 0.83315 0.98762 1.84386 1.18625 1.36278 1.69434 1.28022 0.85257 0.91191 1.00919 1.70741 1.21692 1.10229 1.16417 1.21459 0.88904 0.95525 1.13934 1.16676 0.85496 0.82555 0.76213 1.90794 1.16195 1.83221 1.50934 1.45796 1.10284 1.05172 1.73644 1.21763 0.98810 0.79239 0.96368 0.87578 1.23365 0.95613 0.96027 0.95258 1.64593 1.37212 1.08670 1.11083 1.22138 0.96222 0.92525 0.98735 1.19668 0.88316 0.84466 0.84775 1.90417 1.27223 1.82111 1.47079 1.41861 1.22843 1.13762 1.41133 1.19745 1.04513 0.92114 1.26500 0.87792 1.25287 0.96981 0.99461 0.96246 1.69623 1.23061 1.31879 1.29526 0.85788 0.79830 0.80562 0.78085 1.19206 1.20714 1.20753 1.24130 1.05111 0.95152 0.87308 1.23012 0.97003 0.95108 0.81806 0.90574 1.86451 1.52764 1.72342 1.25210 0.88826 0.90075 0.86840 0.72874 0.75355 0.92494 0.89693 0.92991 0.88935 0.77387 0.91849 0.85668 0.93188 0.76748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 9.88 36.01 0.36 -0.20 16 2 C 0.05 0.43 7.44 -35.08 -0.26 0.17 16 3 O -0.20 -1.62 10.73 6.50 0.07 -1.55 16 4 C 0.17 1.19 13.19 51.96 0.69 1.87 16 5 N -0.46 -4.70 11.06 -11.48 -0.13 -4.83 16 6 C -0.08 -0.89 6.99 -83.02 -0.58 -1.47 16 7 C 0.60 7.89 7.81 -12.52 -0.10 7.79 16 8 O -0.53 -7.89 14.50 5.26 0.08 -7.81 16 9 N -0.70 -8.63 5.02 -53.56 -0.27 -8.90 16 10 C 0.14 1.94 3.06 -66.57 -0.20 1.73 16 11 H 0.11 1.58 7.58 -51.93 -0.39 1.18 16 12 C 0.03 0.38 6.49 -2.75 -0.02 0.36 16 13 N -0.49 -8.23 5.26 -231.88 -1.22 -9.45 16 14 C 0.04 0.64 5.52 -4.97 -0.03 0.61 16 15 C 0.44 10.23 7.49 -10.98 -0.08 10.15 16 16 O -0.58 -14.98 13.10 5.55 0.07 -14.90 16 17 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 18 C -0.30 -8.22 9.68 -14.94 -0.14 -8.36 16 19 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.35 13.05 55.50 0.72 -23.63 16 22 Si 0.93 20.84 29.55 -169.99 -5.02 15.82 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 C 0.01 0.18 5.03 -1.90 -0.01 0.17 16 27 C 0.09 1.21 4.14 -24.87 -0.10 1.10 16 28 H 0.08 0.94 7.74 -51.93 -0.40 0.53 16 29 O -0.56 -7.10 13.41 -35.23 -0.47 -7.57 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.11 0.96 6.48 -51.93 -0.34 0.63 16 33 H 0.26 0.37 8.06 -52.49 -0.42 -0.05 16 34 H 0.41 4.65 8.08 -40.82 -0.33 4.32 16 35 H 0.06 0.80 7.57 -51.93 -0.39 0.41 16 36 H 0.08 1.20 7.92 -51.93 -0.41 0.79 16 37 H 0.05 0.87 7.81 -51.93 -0.41 0.46 16 38 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 39 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 40 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.13 2.37 5.97 -51.93 -0.31 2.06 16 42 H 0.05 0.86 8.02 -51.93 -0.42 0.45 16 43 H 0.38 3.36 9.12 45.56 0.42 3.78 16 LS Contribution 366.62 15.07 5.52 5.52 Total: -1.00 -34.22 366.62 -5.79 -40.01 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -4.51 Total: 16.96 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: -0.58 Total: 14.42 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -0.95 Total: -60.90 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -0.25 Total: -31.85 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.22 -5.79 -40.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191440579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.400 kcal (2) G-P(sol) polarization free energy of solvation -34.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds