Wall clock time and date at job start Tue Mar 31 2020 21:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.34260 * 126.52317 * 2 1 4 4 C 1.34051 * 108.22867 * 180.02562 * 3 2 1 5 5 N 1.29943 * 109.23887 * 359.72288 * 4 3 2 6 6 C 1.36061 * 108.47708 * 0.44355 * 5 4 3 7 7 C 1.47420 * 126.44712 * 179.81899 * 6 5 4 8 8 O 1.21615 * 120.00156 * 179.68909 * 7 6 5 9 9 N 1.34774 * 120.00223 * 359.69051 * 7 6 5 10 10 C 1.46499 * 120.00343 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.27328 * 35.63622 * 10 9 7 12 12 C 1.53995 * 110.30895 * 273.55067 * 10 9 7 13 13 N 1.47912 * 107.05535 * 242.30824 * 12 10 9 14 14 C 1.46901 * 110.99681 * 214.15681 * 13 12 10 15 15 C 1.50701 * 109.46921 * 169.99814 * 14 13 12 16 16 O 1.21294 * 119.99849 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99795 * 179.97438 * 15 14 13 18 18 C 1.37101 * 119.99707 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99704 * 359.97438 * 18 17 15 20 20 C 1.38941 * 119.99927 * 180.02562 * 18 17 15 21 21 N 1.31417 * 120.00180 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00273 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46986 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47457 * 119.99901 * 22 20 18 25 25 H 1.48501 * 109.47104 * 239.99973 * 22 20 18 26 26 C 1.48534 * 105.81750 * 334.66922 * 13 12 10 27 27 C 1.54594 * 110.30875 * 157.83294 * 10 9 7 28 28 H 1.09000 * 110.72653 * 22.51536 * 27 10 9 29 29 O 1.42900 * 110.72322 * 259.41178 * 27 10 9 30 30 H 1.08994 * 109.47232 * 269.96710 * 1 2 3 31 31 H 1.08993 * 109.46980 * 29.97516 * 1 2 3 32 32 H 1.09002 * 109.46615 * 149.97482 * 1 2 3 33 33 H 1.07996 * 125.38255 * 180.02562 * 4 3 2 34 34 H 0.97006 * 120.00122 * 0.02562 * 9 7 6 35 35 H 1.08997 * 109.92080 * 122.95760 * 12 10 9 36 36 H 1.08996 * 109.91547 * 1.65655 * 12 10 9 37 37 H 1.09002 * 109.47401 * 49.99842 * 14 13 12 38 38 H 1.09001 * 109.46874 * 289.99855 * 14 13 12 39 39 H 0.96995 * 120.00011 * 0.02562 * 17 15 14 40 40 H 0.97000 * 119.99884 * 180.02562 * 21 20 18 41 41 H 1.08997 * 110.66294 * 157.64845 * 26 13 12 42 42 H 1.09001 * 110.66815 * 280.76799 * 26 13 12 43 43 H 0.96705 * 114.00059 * 180.02562 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5788 0.6581 -0.0006 5 7 3.6002 -0.6411 0.0050 6 6 2.3171 -1.0936 -0.0006 7 6 1.8855 -2.5032 -0.0010 8 8 0.7004 -2.7763 -0.0006 9 7 2.8042 -3.4893 -0.0017 10 6 2.3753 -4.8901 -0.0014 11 1 1.4697 -5.0079 -0.5966 12 6 2.1343 -5.3750 1.4401 13 7 3.0943 -6.4709 1.6954 14 6 2.5093 -7.4879 2.5794 15 6 3.4096 -8.6957 2.6204 16 8 4.4377 -8.7079 1.9769 17 7 3.0729 -9.7620 3.3729 18 6 3.8923 -10.8606 3.4105 19 1 4.8073 -10.8717 2.8369 20 6 3.5450 -11.9600 4.1859 21 7 2.4313 -11.9467 4.8835 22 14 4.6617 -13.4566 4.2378 23 1 5.8446 -13.2218 3.3715 24 1 5.1090 -13.6922 5.6340 25 1 3.9187 -14.6457 3.7487 26 6 3.4169 -7.0449 0.3639 27 6 3.5017 -5.7962 -0.5493 28 1 4.4718 -5.3095 -0.4482 29 8 3.2524 -6.1445 -1.9126 30 1 -0.3633 -0.0006 1.0276 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3632 -0.8898 -0.5142 33 1 4.4489 1.2978 -0.0003 34 1 3.7495 -3.2715 -0.0015 35 1 1.1138 -5.7442 1.5421 36 1 2.3083 -4.5583 2.1406 37 1 1.5292 -7.7781 2.2008 38 1 2.4041 -7.0788 3.5842 39 1 2.2510 -9.7521 3.8877 40 1 2.1891 -12.7141 5.4250 41 1 4.3733 -7.5669 0.3917 42 1 2.6226 -7.7125 0.0301 43 1 3.9301 -6.7128 -2.3036 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191440579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:13 Heat of formation + Delta-G solvation = -110.543363 kcal Electronic energy + Delta-G solvation = -28867.723417 eV Core-core repulsion = 24527.905679 eV Total energy + Delta-G solvation = -4339.817738 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.44351 -41.39375 -40.37589 -39.28376 -36.95398 -36.05865 -35.91318 -35.34191 -33.38028 -33.32922 -31.54890 -29.39087 -28.54586 -27.78766 -26.09296 -24.86236 -23.14197 -22.82607 -21.79571 -21.51499 -21.08779 -19.90370 -19.34868 -18.64294 -17.92384 -17.80919 -17.41688 -17.19467 -16.70247 -16.36240 -16.23194 -15.95016 -15.82742 -15.56076 -15.32865 -15.20570 -14.71455 -14.43858 -14.29531 -13.96012 -13.83116 -13.82074 -13.53701 -13.44506 -13.36256 -13.04066 -12.91681 -12.61849 -12.43125 -12.41004 -12.11919 -11.88102 -11.80284 -11.48903 -11.38119 -11.04289 -10.43354 -10.17652 -10.02191 -9.90437 -9.46190 -8.47647 -5.96387 0.02650 1.03656 1.36123 1.41945 1.55663 1.56048 1.96617 2.01172 2.16812 2.27079 2.61731 3.04740 3.09934 3.18898 3.27053 3.53701 3.62691 3.69031 3.85196 3.95901 4.17735 4.24895 4.25476 4.30768 4.39995 4.41252 4.48508 4.58065 4.59664 4.71078 4.80239 4.88361 5.07556 5.10912 5.17791 5.32417 5.40844 5.70390 5.78762 6.02632 6.22918 6.55183 6.58076 6.72721 7.00198 7.11108 7.53177 8.07734 8.69990 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025401 B = 0.002044 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.034530 B =13697.933304 C =13977.445264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.048 3.952 3 O -0.199 6.199 4 C 0.196 3.804 5 N -0.495 5.495 6 C -0.109 4.109 7 C 0.602 3.398 8 O -0.558 6.558 9 N -0.693 5.693 10 C 0.150 3.850 11 H 0.094 0.906 12 C 0.033 3.967 13 N -0.500 5.500 14 C 0.045 3.955 15 C 0.442 3.558 16 O -0.611 6.611 17 N -0.572 5.572 18 C -0.330 4.330 19 H 0.082 0.918 20 C -0.015 4.015 21 N -0.921 5.921 22 Si 0.994 3.006 23 H -0.271 1.271 24 H -0.272 1.272 25 H -0.272 1.272 26 C 0.015 3.985 27 C 0.107 3.893 28 H 0.090 0.910 29 O -0.569 6.569 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.304 0.696 34 H 0.415 0.585 35 H 0.062 0.938 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.112 0.888 39 H 0.396 0.604 40 H 0.277 0.723 41 H 0.098 0.902 42 H 0.037 0.963 43 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.015 25.782 -9.959 27.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.009 4.009 3 O -0.086 6.086 4 C -0.032 4.032 5 N -0.223 5.223 6 C -0.227 4.227 7 C 0.389 3.611 8 O -0.438 6.438 9 N -0.344 5.344 10 C 0.045 3.955 11 H 0.112 0.888 12 C -0.096 4.096 13 N -0.226 5.226 14 C -0.086 4.086 15 C 0.229 3.771 16 O -0.497 6.497 17 N -0.209 5.209 18 C -0.459 4.459 19 H 0.100 0.900 20 C -0.215 4.215 21 N -0.562 5.562 22 Si 0.818 3.182 23 H -0.196 1.196 24 H -0.197 1.197 25 H -0.197 1.197 26 C -0.114 4.114 27 C 0.046 3.954 28 H 0.108 0.892 29 O -0.377 6.377 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.115 0.885 33 H 0.319 0.681 34 H 0.253 0.747 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.130 0.870 39 H 0.229 0.771 40 H 0.087 0.913 41 H 0.116 0.884 42 H 0.056 0.944 43 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -1.771 25.595 -9.903 27.501 hybrid contribution -0.190 -1.233 0.143 1.255 sum -1.960 24.363 -9.760 26.318 Atomic orbital electron populations 1.20676 0.81259 1.05876 1.05521 1.24105 0.96126 0.83174 0.97538 1.84427 1.19081 1.35670 1.69384 1.29159 0.85813 0.90792 0.97458 1.70709 1.21232 1.11953 1.18420 1.21314 0.90098 0.94944 1.16364 1.16962 0.85188 0.83418 0.75542 1.90772 1.17082 1.83804 1.52092 1.45701 1.10556 1.04557 1.73569 1.21563 0.98360 0.80032 0.95591 0.88783 1.23345 0.95232 0.95108 0.95919 1.64571 1.38161 1.08711 1.11117 1.22050 0.95515 0.90721 1.00363 1.20547 0.88353 0.85134 0.83075 1.90414 1.28713 1.82845 1.47737 1.41928 1.22897 1.14019 1.42014 1.19708 1.04728 0.93828 1.27644 0.89964 1.26075 0.98302 1.01671 0.95431 1.69687 1.23999 1.32827 1.29699 0.84848 0.77887 0.77185 0.78285 1.19575 1.19716 1.19734 1.23954 1.03079 0.96251 0.88078 1.22805 0.97563 0.93423 0.81578 0.89202 1.86425 1.53916 1.72810 1.24591 0.87923 0.87611 0.88464 0.68122 0.74719 0.91991 0.89228 0.91271 0.87044 0.77063 0.91319 0.88385 0.94443 0.74799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 9.88 71.24 0.70 -0.30 16 2 C 0.05 0.84 7.44 25.19 0.19 1.03 16 3 O -0.20 -2.72 10.73 0.35 0.00 -2.72 16 4 C 0.20 2.11 13.19 130.52 1.72 3.83 16 5 N -0.49 -9.26 11.06 -305.15 -3.37 -12.63 16 6 C -0.11 -2.39 6.99 40.41 0.28 -2.10 16 7 C 0.60 15.53 7.81 86.66 0.68 16.21 16 8 O -0.56 -16.55 14.50 -4.08 -0.06 -16.61 16 9 N -0.69 -16.74 5.02 -441.63 -2.22 -18.96 16 10 C 0.15 3.98 3.06 45.87 0.14 4.12 16 11 H 0.09 2.77 7.58 -2.39 -0.02 2.76 16 12 C 0.03 0.91 6.49 86.44 0.56 1.47 16 13 N -0.50 -16.57 5.26 -887.55 -4.67 -21.24 16 14 C 0.04 1.60 5.52 85.56 0.47 2.07 16 15 C 0.44 20.77 7.49 87.66 0.66 21.42 16 16 O -0.61 -32.22 13.10 -3.07 -0.04 -32.26 16 17 N -0.57 -29.22 5.29 -306.98 -1.62 -30.84 16 18 C -0.33 -18.51 9.68 84.04 0.81 -17.70 16 19 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 20 C -0.02 -0.81 5.50 84.92 0.47 -0.34 16 21 N -0.92 -49.78 13.05 21.66 0.28 -49.50 16 22 Si 0.99 42.72 29.55 68.60 2.03 44.74 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 25 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 26 C 0.01 0.49 5.03 86.65 0.44 0.93 16 27 C 0.11 2.77 4.14 31.80 0.13 2.90 16 28 H 0.09 2.11 7.74 -2.39 -0.02 2.09 16 29 O -0.57 -13.93 13.41 -148.98 -2.00 -15.93 16 30 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.10 1.63 6.48 -2.39 -0.02 1.62 16 33 H 0.30 -0.43 8.06 -2.91 -0.02 -0.45 16 34 H 0.42 9.11 8.08 -92.70 -0.75 8.36 16 35 H 0.06 1.67 7.57 -2.39 -0.02 1.66 16 36 H 0.09 2.43 7.92 -2.39 -0.02 2.41 16 37 H 0.07 2.25 7.81 -2.39 -0.02 2.23 16 38 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 39 H 0.40 19.39 7.90 -92.71 -0.73 18.66 16 40 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 41 H 0.10 3.82 5.97 -2.39 -0.01 3.80 16 42 H 0.04 1.31 8.02 -2.39 -0.02 1.29 16 43 H 0.40 6.66 9.12 -74.05 -0.68 5.99 16 Total: -1.00 -74.94 366.62 -5.47 -80.41 By element: Atomic # 1 Polarization: 43.03 SS G_CDS: -1.05 Total: 41.98 kcal Atomic # 6 Polarization: 26.30 SS G_CDS: 7.25 Total: 33.55 kcal Atomic # 7 Polarization: -121.57 SS G_CDS: -11.60 Total: -133.17 kcal Atomic # 8 Polarization: -65.41 SS G_CDS: -2.09 Total: -67.51 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -74.94 -5.47 -80.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191440579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.134 kcal (2) G-P(sol) polarization free energy of solvation -74.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds