Wall clock time and date at job start Tue Mar 31 2020 20:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86795 * 119.99465 * 2 1 4 4 H 1.48504 * 109.47248 * 269.99940 * 3 2 1 5 5 H 1.48497 * 109.47495 * 30.00395 * 3 2 1 6 6 H 1.48506 * 109.46837 * 149.99917 * 3 2 1 7 7 C 1.38945 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00082 * 359.97438 * 7 2 1 9 9 N 1.37098 * 120.00016 * 180.02562 * 7 2 1 10 10 C 1.34776 * 120.00083 * 179.97438 * 9 7 2 11 11 O 1.21284 * 120.00023 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99822 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.46837 * 179.97438 * 12 10 9 14 14 C 1.48562 * 111.00016 * 74.58697 * 13 12 10 15 15 C 1.54370 * 104.59481 * 159.03715 * 14 13 12 16 16 H 1.09006 * 110.41228 * 95.08804 * 15 14 13 17 17 O 1.42903 * 110.32352 * 217.24532 * 15 14 13 18 18 C 1.54259 * 105.06350 * 336.14427 * 15 14 13 19 19 H 1.08997 * 110.32376 * 241.00363 * 18 15 14 20 20 N 1.46501 * 110.32224 * 118.89621 * 18 15 14 21 21 C 1.34781 * 119.99791 * 155.00181 * 20 18 15 22 22 O 1.21278 * 120.00052 * 359.97438 * 21 20 18 23 23 C 1.50694 * 119.99808 * 180.02562 * 21 20 18 24 24 C 1.50706 * 109.47233 * 179.97438 * 23 21 20 25 25 C 1.41375 * 126.80152 * 124.70418 * 24 23 21 26 26 C 1.35451 * 103.98593 * 179.89286 * 25 24 23 27 27 O 1.34038 * 106.44398 * 0.37016 * 26 25 24 28 28 N 1.20923 * 111.57079 * 359.74749 * 27 26 25 29 29 C 1.48567 * 110.99905 * 190.00283 * 13 12 10 30 30 H 0.96994 * 120.00375 * 359.97438 * 1 2 3 31 31 H 0.96996 * 119.99750 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47112 * 59.99992 * 12 10 9 33 33 H 1.08998 * 109.47472 * 300.00074 * 12 10 9 34 34 H 1.08998 * 110.41065 * 40.25398 * 14 13 12 35 35 H 1.09003 * 110.40788 * 277.81711 * 14 13 12 36 36 H 0.96700 * 114.00311 * 295.64246 * 17 15 14 37 37 H 0.97005 * 120.00083 * 335.00376 * 20 18 15 38 38 H 1.09004 * 109.47147 * 299.99448 * 23 21 20 39 39 H 1.08998 * 109.47756 * 59.99884 * 23 21 20 40 40 H 1.07998 * 128.00829 * 0.03296 * 25 24 23 41 41 H 1.08004 * 126.77629 * 180.09956 * 26 25 24 42 42 H 1.08999 * 110.41176 * 82.18022 * 29 13 12 43 43 H 1.09009 * 110.40687 * 319.73840 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 1.4690 -2.1386 -0.0005 9 7 3.3799 -1.2032 0.0000 10 6 4.0538 -2.3704 0.0000 11 8 3.4475 -3.4208 0.0000 12 6 5.5608 -2.3703 0.0000 13 7 6.0505 -3.7553 0.0006 14 6 5.8805 -4.3807 -1.3362 15 6 6.8811 -5.5561 -1.3458 16 1 6.3839 -6.4811 -1.0537 17 8 7.4686 -5.6972 -2.6408 18 6 7.9570 -5.1753 -0.3080 19 1 8.9335 -5.0976 -0.7860 20 7 7.9967 -6.1659 0.7706 21 6 9.1260 -6.3386 1.4857 22 8 10.1095 -5.6743 1.2359 23 6 9.1671 -7.3580 2.5948 24 6 10.5333 -7.3536 3.2308 25 6 10.8292 -7.1670 4.6006 26 6 12.1798 -7.2513 4.6582 27 8 12.6008 -7.4615 3.4031 28 7 11.6751 -7.5152 2.6269 29 6 7.5158 -3.8018 0.2416 30 1 -0.4850 0.8400 0.0004 31 1 3.8648 -0.3632 0.0004 32 1 5.9242 -1.8564 0.8900 33 1 5.9242 -1.8565 -0.8899 34 1 6.1243 -3.6673 -2.1234 35 1 4.8614 -4.7480 -1.4571 36 1 6.8388 -5.9363 -3.3346 37 1 7.2102 -6.6975 0.9701 38 1 8.4160 -7.1095 3.3447 39 1 8.9598 -8.3473 2.1869 40 1 10.1381 -6.9987 5.4133 41 1 12.7962 -7.1619 5.5406 42 1 7.7280 -3.7331 1.3085 43 1 8.0156 -2.9978 -0.2989 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192014721.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:35 Heat of formation + Delta-G solvation = -31.694503 kcal Electronic energy + Delta-G solvation = -28681.499440 eV Core-core repulsion = 24345.100845 eV Total energy + Delta-G solvation = -4336.398595 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.18102 -40.40682 -39.10440 -38.02714 -35.91664 -34.94750 -34.48667 -33.88711 -32.02209 -31.71867 -30.82108 -29.40688 -28.07709 -26.57298 -24.15275 -23.42384 -22.46943 -21.59681 -20.82878 -20.41203 -19.39746 -18.39325 -18.08398 -17.97813 -17.68569 -17.13546 -16.29917 -16.06888 -15.77356 -15.22253 -15.15122 -14.98872 -14.73224 -14.32632 -13.99345 -13.64254 -13.58330 -13.34926 -13.26599 -13.06955 -12.84031 -12.68663 -12.45866 -12.31250 -11.97562 -11.81906 -11.52801 -11.44263 -11.14164 -10.87110 -10.62178 -10.52719 -10.27662 -10.01084 -9.98203 -9.87128 -9.59210 -9.32008 -8.71984 -8.24350 -8.18776 -6.34268 -3.85823 1.27706 1.90397 2.41252 2.85217 3.00505 3.03378 3.04512 3.13025 3.69013 3.74880 3.78784 4.07176 4.11869 4.21254 4.37965 4.52759 4.64708 4.80030 4.83674 4.89398 4.93789 4.96485 5.16129 5.16647 5.26383 5.30019 5.38797 5.52599 5.55265 5.62457 5.68144 5.71802 5.82719 5.89187 6.06577 6.27376 6.81286 6.92801 7.26634 7.42499 7.54773 8.00240 8.04475 8.10434 8.56762 8.91716 9.39099 9.79584 10.78751 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017493 B = 0.002154 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.277498 B =12998.778320 C =13838.580413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.592 5.592 10 C 0.455 3.545 11 O -0.560 6.560 12 C 0.031 3.969 13 N -0.479 5.479 14 C 0.005 3.995 15 C 0.095 3.905 16 H 0.075 0.925 17 O -0.562 6.562 18 C 0.151 3.849 19 H 0.108 0.892 20 N -0.714 5.714 21 C 0.517 3.483 22 O -0.526 6.526 23 C -0.062 4.062 24 C 0.023 3.977 25 C -0.228 4.228 26 C -0.064 4.064 27 O 0.104 5.896 28 N -0.337 5.337 29 C 0.023 3.977 30 H 0.273 0.727 31 H 0.370 0.630 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.104 0.896 36 H 0.384 0.616 37 H 0.405 0.595 38 H 0.119 0.881 39 H 0.114 0.886 40 H 0.172 0.828 41 H 0.216 0.784 42 H 0.088 0.912 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.029 -13.459 6.032 25.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.231 5.231 10 C 0.240 3.760 11 O -0.442 6.442 12 C -0.101 4.101 13 N -0.203 5.203 14 C -0.124 4.124 15 C 0.035 3.965 16 H 0.093 0.907 17 O -0.368 6.368 18 C 0.045 3.955 19 H 0.126 0.874 20 N -0.367 5.367 21 C 0.302 3.698 22 O -0.401 6.401 23 C -0.103 4.103 24 C -0.137 4.137 25 C -0.249 4.249 26 C -0.145 4.145 27 O 0.034 5.966 28 N -0.037 5.037 29 C -0.106 4.106 30 H 0.084 0.916 31 H 0.203 0.797 32 H 0.110 0.890 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.122 0.878 36 H 0.233 0.767 37 H 0.240 0.760 38 H 0.138 0.862 39 H 0.132 0.868 40 H 0.190 0.810 41 H 0.232 0.768 42 H 0.106 0.894 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 21.703 -13.901 5.296 26.312 hybrid contribution -0.493 1.842 0.143 1.912 sum 21.210 -12.060 5.439 24.997 Atomic orbital electron populations 1.69618 1.05622 1.27521 1.49352 1.25039 0.95504 0.97992 0.97657 0.86677 0.79804 0.84057 0.78885 1.19650 1.20145 1.19493 1.19407 0.79171 0.96593 1.48113 0.86283 1.42214 1.07553 1.06142 1.67214 1.19555 0.87852 0.84573 0.84008 1.90533 1.69329 1.30848 1.53484 1.22121 0.96015 0.89960 1.02038 1.65137 1.11765 1.16350 1.27075 1.23923 1.01335 0.96173 0.90920 1.22743 0.92197 0.98000 0.83560 0.90720 1.86490 1.39376 1.93012 1.17918 1.21451 1.00337 0.87442 0.86251 0.87418 1.45875 1.14651 1.40949 1.35204 1.20289 0.82858 0.83870 0.82749 1.90761 1.34391 1.47137 1.67813 1.19989 0.92202 1.00680 0.97420 1.22866 0.94870 1.04288 0.91674 1.22711 0.96187 1.08902 0.97120 1.26007 0.95738 1.03116 0.89676 1.84878 1.31451 1.65629 1.14643 1.73903 0.96267 1.17286 1.16281 1.23582 0.88996 0.95911 1.02158 0.91599 0.79727 0.89040 0.92770 0.92843 0.87778 0.76746 0.75974 0.86242 0.86832 0.81006 0.76765 0.89379 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.46 13.96 55.50 0.77 -24.68 16 2 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 3 Si 0.88 19.21 27.74 -169.99 -4.71 14.49 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 7 C -0.30 -8.46 10.16 -14.93 -0.15 -8.61 16 8 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 9 N -0.59 -13.85 5.09 -10.97 -0.06 -13.91 16 10 C 0.45 10.04 7.63 -10.99 -0.08 9.96 16 11 O -0.56 -14.39 14.80 5.55 0.08 -14.31 16 12 C 0.03 0.50 5.32 -4.98 -0.03 0.48 16 13 N -0.48 -7.26 4.98 -231.41 -1.15 -8.41 16 14 C 0.01 0.07 5.66 -2.19 -0.01 0.06 16 15 C 0.10 1.08 4.18 -25.35 -0.11 0.97 16 16 H 0.07 0.75 7.67 -51.93 -0.40 0.35 16 17 O -0.56 -6.16 13.26 -35.23 -0.47 -6.63 16 18 C 0.15 1.82 3.22 -66.55 -0.21 1.61 16 19 H 0.11 1.51 7.40 -51.93 -0.38 1.13 16 20 N -0.71 -7.26 5.06 -52.47 -0.27 -7.53 16 21 C 0.52 5.94 7.82 -10.99 -0.09 5.85 16 22 O -0.53 -8.36 15.24 5.56 0.08 -8.28 16 23 C -0.06 -0.49 6.30 -29.03 -0.18 -0.68 16 24 C 0.02 0.23 6.10 -82.10 -0.50 -0.27 16 25 C -0.23 -1.66 11.12 -39.38 -0.44 -2.10 16 26 C -0.06 -0.41 12.30 29.74 0.37 -0.05 16 27 O 0.10 1.06 11.20 17.18 0.19 1.25 16 28 N -0.34 -4.21 11.46 33.42 0.38 -3.83 16 29 C 0.02 0.30 6.17 -2.18 -0.01 0.28 16 30 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.37 7.65 5.76 -40.82 -0.24 7.42 16 32 H 0.09 1.35 8.08 -51.93 -0.42 0.93 16 33 H 0.05 0.80 7.77 -51.93 -0.40 0.39 16 34 H 0.05 0.74 7.69 -51.93 -0.40 0.34 16 35 H 0.10 1.67 7.24 -51.93 -0.38 1.29 16 36 H 0.38 2.65 9.12 45.56 0.42 3.06 16 37 H 0.41 3.17 8.36 -40.82 -0.34 2.83 16 38 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.22 0.38 8.06 -52.48 -0.42 -0.05 16 42 H 0.09 1.16 8.05 -51.93 -0.42 0.74 16 43 H 0.05 0.69 8.00 -51.92 -0.42 0.28 16 LS Contribution 368.22 15.07 5.55 5.55 Total: -1.00 -38.27 368.22 -5.76 -44.02 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -4.62 Total: 13.74 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -1.55 Total: 8.52 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: -0.32 Total: -58.36 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.11 Total: -27.96 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -38.27 -5.76 -44.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192014721.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.329 kcal (2) G-P(sol) polarization free energy of solvation -38.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds