Wall clock time and date at job start Tue Mar 31 2020 20:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86795 * 119.99465 * 2 1 4 4 H 1.48504 * 109.47248 * 269.99940 * 3 2 1 5 5 H 1.48497 * 109.47495 * 30.00395 * 3 2 1 6 6 H 1.48506 * 109.46837 * 149.99917 * 3 2 1 7 7 C 1.38945 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00082 * 359.97438 * 7 2 1 9 9 N 1.37098 * 120.00016 * 180.02562 * 7 2 1 10 10 C 1.34776 * 120.00083 * 179.97438 * 9 7 2 11 11 O 1.21284 * 120.00023 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99822 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.46837 * 179.97438 * 12 10 9 14 14 C 1.48562 * 111.00016 * 74.58697 * 13 12 10 15 15 C 1.54370 * 104.59481 * 159.03715 * 14 13 12 16 16 H 1.09006 * 110.41228 * 95.08804 * 15 14 13 17 17 O 1.42903 * 110.32352 * 217.24532 * 15 14 13 18 18 C 1.54259 * 105.06350 * 336.14427 * 15 14 13 19 19 H 1.08997 * 110.32376 * 241.00363 * 18 15 14 20 20 N 1.46501 * 110.32224 * 118.89621 * 18 15 14 21 21 C 1.34781 * 119.99791 * 155.00181 * 20 18 15 22 22 O 1.21278 * 120.00052 * 359.97438 * 21 20 18 23 23 C 1.50694 * 119.99808 * 180.02562 * 21 20 18 24 24 C 1.50706 * 109.47233 * 179.97438 * 23 21 20 25 25 C 1.41375 * 126.80152 * 124.70418 * 24 23 21 26 26 C 1.35451 * 103.98593 * 179.89286 * 25 24 23 27 27 O 1.34038 * 106.44398 * 0.37016 * 26 25 24 28 28 N 1.20923 * 111.57079 * 359.74749 * 27 26 25 29 29 C 1.48567 * 110.99905 * 190.00283 * 13 12 10 30 30 H 0.96994 * 120.00375 * 359.97438 * 1 2 3 31 31 H 0.96996 * 119.99750 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47112 * 59.99992 * 12 10 9 33 33 H 1.08998 * 109.47472 * 300.00074 * 12 10 9 34 34 H 1.08998 * 110.41065 * 40.25398 * 14 13 12 35 35 H 1.09003 * 110.40788 * 277.81711 * 14 13 12 36 36 H 0.96700 * 114.00311 * 295.64246 * 17 15 14 37 37 H 0.97005 * 120.00083 * 335.00376 * 20 18 15 38 38 H 1.09004 * 109.47147 * 299.99448 * 23 21 20 39 39 H 1.08998 * 109.47756 * 59.99884 * 23 21 20 40 40 H 1.07998 * 128.00829 * 0.03296 * 25 24 23 41 41 H 1.08004 * 126.77629 * 180.09956 * 26 25 24 42 42 H 1.08999 * 110.41176 * 82.18022 * 29 13 12 43 43 H 1.09009 * 110.40687 * 319.73840 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 1.4690 -2.1386 -0.0005 9 7 3.3799 -1.2032 0.0000 10 6 4.0538 -2.3704 0.0000 11 8 3.4475 -3.4208 0.0000 12 6 5.5608 -2.3703 0.0000 13 7 6.0505 -3.7553 0.0006 14 6 5.8805 -4.3807 -1.3362 15 6 6.8811 -5.5561 -1.3458 16 1 6.3839 -6.4811 -1.0537 17 8 7.4686 -5.6972 -2.6408 18 6 7.9570 -5.1753 -0.3080 19 1 8.9335 -5.0976 -0.7860 20 7 7.9967 -6.1659 0.7706 21 6 9.1260 -6.3386 1.4857 22 8 10.1095 -5.6743 1.2359 23 6 9.1671 -7.3580 2.5948 24 6 10.5333 -7.3536 3.2308 25 6 10.8292 -7.1670 4.6006 26 6 12.1798 -7.2513 4.6582 27 8 12.6008 -7.4615 3.4031 28 7 11.6751 -7.5152 2.6269 29 6 7.5158 -3.8018 0.2416 30 1 -0.4850 0.8400 0.0004 31 1 3.8648 -0.3632 0.0004 32 1 5.9242 -1.8564 0.8900 33 1 5.9242 -1.8565 -0.8899 34 1 6.1243 -3.6673 -2.1234 35 1 4.8614 -4.7480 -1.4571 36 1 6.8388 -5.9363 -3.3346 37 1 7.2102 -6.6975 0.9701 38 1 8.4160 -7.1095 3.3447 39 1 8.9598 -8.3473 2.1869 40 1 10.1381 -6.9987 5.4133 41 1 12.7962 -7.1619 5.5406 42 1 7.7280 -3.7331 1.3085 43 1 8.0156 -2.9978 -0.2989 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192014721.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:34 Heat of formation + Delta-G solvation = -67.363490 kcal Electronic energy + Delta-G solvation = -28683.046164 eV Core-core repulsion = 24345.100845 eV Total energy + Delta-G solvation = -4337.945318 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.83092 -41.40673 -40.41113 -39.45759 -36.94058 -36.00583 -35.59243 -35.34907 -33.74652 -32.61333 -31.84472 -30.31522 -29.09750 -28.01875 -25.84538 -24.04354 -23.30988 -22.67143 -21.72186 -21.32857 -21.16920 -20.22249 -18.82280 -18.73265 -18.49905 -17.96936 -17.77384 -17.18615 -16.86434 -16.59899 -16.29591 -16.09864 -15.83228 -15.56406 -15.04256 -14.97735 -14.61399 -14.56818 -14.37871 -14.15583 -13.90079 -13.83826 -13.62268 -13.56201 -13.18679 -13.04396 -12.86493 -12.53834 -12.41378 -12.18394 -11.99199 -11.87809 -11.49221 -11.30814 -11.12637 -10.81374 -10.49424 -10.48431 -10.24027 -10.18256 -9.51818 -8.41079 -6.01396 0.72069 1.29707 1.30074 1.34499 1.43448 1.56306 1.95323 2.06524 2.22296 2.51684 2.56281 3.07341 3.14424 3.21040 3.23674 3.48238 3.60915 3.74109 3.91908 3.97737 4.11905 4.24834 4.25865 4.29530 4.35889 4.41556 4.43094 4.49080 4.57388 4.62950 4.72951 4.80456 4.90472 4.91121 5.22286 5.37381 5.51152 5.70470 5.76677 5.96750 6.47250 6.59486 6.73754 6.88529 7.18350 7.39997 7.44900 7.96164 8.76255 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017493 B = 0.002154 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.277498 B =12998.778320 C =13838.580413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.962 3.038 4 H -0.259 1.259 5 H -0.276 1.276 6 H -0.233 1.233 7 C -0.324 4.324 8 H 0.058 0.942 9 N -0.594 5.594 10 C 0.456 3.544 11 O -0.602 6.602 12 C 0.040 3.960 13 N -0.494 5.494 14 C 0.007 3.993 15 C 0.109 3.891 16 H 0.090 0.910 17 O -0.572 6.572 18 C 0.154 3.846 19 H 0.089 0.911 20 N -0.704 5.704 21 C 0.515 3.485 22 O -0.575 6.575 23 C -0.058 4.058 24 C 0.004 3.996 25 C -0.235 4.235 26 C -0.054 4.054 27 O 0.083 5.917 28 N -0.387 5.387 29 C 0.030 3.970 30 H 0.279 0.721 31 H 0.388 0.612 32 H 0.118 0.882 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.401 0.599 37 H 0.418 0.582 38 H 0.153 0.847 39 H 0.135 0.865 40 H 0.201 0.799 41 H 0.260 0.740 42 H 0.088 0.912 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.251 -12.540 7.273 27.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.214 4.214 3 Si 0.782 3.218 4 H -0.183 1.183 5 H -0.201 1.201 6 H -0.156 1.156 7 C -0.453 4.453 8 H 0.077 0.923 9 N -0.236 5.236 10 C 0.244 3.756 11 O -0.485 6.485 12 C -0.091 4.091 13 N -0.219 5.219 14 C -0.122 4.122 15 C 0.049 3.951 16 H 0.108 0.892 17 O -0.380 6.380 18 C 0.047 3.953 19 H 0.107 0.893 20 N -0.357 5.357 21 C 0.302 3.698 22 O -0.453 6.453 23 C -0.098 4.098 24 C -0.155 4.155 25 C -0.257 4.257 26 C -0.135 4.135 27 O 0.016 5.984 28 N -0.091 5.091 29 C -0.098 4.098 30 H 0.088 0.912 31 H 0.223 0.777 32 H 0.136 0.864 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.253 0.747 37 H 0.256 0.744 38 H 0.170 0.830 39 H 0.153 0.847 40 H 0.218 0.782 41 H 0.275 0.725 42 H 0.106 0.894 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 23.934 -13.022 6.538 28.020 hybrid contribution -1.224 1.409 -0.232 1.881 sum 22.709 -11.613 6.305 26.274 Atomic orbital electron populations 1.69795 1.08019 1.29160 1.50470 1.26070 0.96453 1.02586 0.96288 0.85406 0.79495 0.77063 0.79836 1.18312 1.20089 1.15636 1.18983 0.81331 0.94919 1.50052 0.92341 1.42051 1.05892 1.07558 1.68090 1.20679 0.90348 0.83407 0.81198 1.90519 1.71093 1.32432 1.54485 1.22042 0.91095 0.91453 1.04528 1.65058 1.13297 1.15708 1.27870 1.23854 1.00609 0.97153 0.90554 1.22574 0.91223 0.97538 0.83814 0.89180 1.86465 1.40303 1.93015 1.18245 1.21289 0.99399 0.87730 0.86857 0.89272 1.45798 1.15026 1.40447 1.34418 1.20913 0.82101 0.83751 0.83017 1.90741 1.36069 1.49203 1.69309 1.20138 0.92231 1.00497 0.96928 1.23423 0.95097 1.03816 0.93136 1.23135 0.97053 1.08833 0.96641 1.26907 0.96358 1.00815 0.89393 1.84808 1.31420 1.66114 1.16023 1.73899 0.97424 1.19782 1.18035 1.23538 0.87354 0.96677 1.02270 0.91200 0.77667 0.86438 0.90103 0.92624 0.90389 0.74742 0.74445 0.82966 0.84744 0.78162 0.72458 0.89386 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.63 13.96 21.66 0.30 -55.32 16 2 C -0.02 -0.84 5.50 84.92 0.47 -0.37 16 3 Si 0.96 38.47 27.74 68.60 1.90 40.38 16 4 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 5 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.23 -7.88 6.52 99.48 0.65 -7.23 16 7 C -0.32 -18.58 10.16 84.04 0.85 -17.73 16 8 H 0.06 3.98 7.39 -2.91 -0.02 3.96 16 9 N -0.59 -27.44 5.09 -307.00 -1.56 -29.01 16 10 C 0.46 19.94 7.63 87.66 0.67 20.61 16 11 O -0.60 -31.72 14.80 -3.04 -0.04 -31.77 16 12 C 0.04 1.23 5.32 85.56 0.45 1.68 16 13 N -0.49 -14.15 4.98 -886.03 -4.41 -18.56 16 14 C 0.01 0.19 5.66 86.45 0.49 0.68 16 15 C 0.11 2.31 4.18 31.49 0.13 2.45 16 16 H 0.09 1.64 7.67 -2.38 -0.02 1.63 16 17 O -0.57 -11.67 13.26 -148.98 -1.98 -13.65 16 18 C 0.15 3.51 3.22 45.88 0.15 3.66 16 19 H 0.09 2.45 7.40 -2.39 -0.02 2.43 16 20 N -0.70 -13.22 5.06 -438.31 -2.22 -15.44 16 21 C 0.52 11.26 7.82 87.65 0.69 11.94 16 22 O -0.57 -18.26 15.24 -3.02 -0.05 -18.31 16 23 C -0.06 -0.81 6.30 29.10 0.18 -0.62 16 24 C 0.00 0.08 6.10 43.58 0.27 0.35 16 25 C -0.24 -2.89 11.12 22.40 0.25 -2.64 16 26 C -0.05 -0.59 12.30 67.18 0.83 0.24 16 27 O 0.08 1.68 11.20 71.66 0.80 2.48 16 28 N -0.39 -9.72 11.46 -49.56 -0.57 -10.29 16 29 C 0.03 0.73 6.17 86.45 0.53 1.26 16 30 H 0.28 15.19 8.31 -92.71 -0.77 14.42 16 31 H 0.39 14.97 5.76 -92.71 -0.53 14.43 16 32 H 0.12 3.02 8.08 -2.39 -0.02 3.00 16 33 H 0.08 2.08 7.77 -2.39 -0.02 2.07 16 34 H 0.06 1.46 7.69 -2.39 -0.02 1.44 16 35 H 0.08 2.52 7.24 -2.39 -0.02 2.50 16 36 H 0.40 4.92 9.12 -74.06 -0.68 4.24 16 37 H 0.42 5.67 8.36 -92.70 -0.77 4.89 16 38 H 0.15 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.20 1.07 8.06 -2.91 -0.02 1.05 16 41 H 0.26 0.01 8.06 -2.91 -0.02 -0.01 16 42 H 0.09 2.13 8.05 -2.39 -0.02 2.11 16 43 H 0.06 1.41 8.00 -2.38 -0.02 1.39 16 Total: -1.00 -90.01 368.22 -2.81 -92.82 By element: Atomic # 1 Polarization: 36.13 SS G_CDS: -0.95 Total: 35.18 kcal Atomic # 6 Polarization: 15.53 SS G_CDS: 5.96 Total: 21.49 kcal Atomic # 7 Polarization: -120.16 SS G_CDS: -8.46 Total: -128.62 kcal Atomic # 8 Polarization: -59.98 SS G_CDS: -1.26 Total: -61.24 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 1.90 Total: 40.38 kcal Total: -90.01 -2.81 -92.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192014721.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.452 kcal (2) G-P(sol) polarization free energy of solvation -90.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds