Wall clock time and date at job start Tue Mar 31 2020 22:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33692 * 126.26801 * 2 1 4 4 C 1.30614 * 108.99427 * 180.02562 * 3 2 1 5 5 O 1.33666 * 109.15233 * 359.73765 * 4 3 2 6 6 C 1.35336 * 107.68601 * 0.42618 * 5 4 3 7 7 C 1.46719 * 126.64601 * 179.83766 * 6 5 4 8 8 O 1.21692 * 120.00308 * 179.68826 * 7 6 5 9 9 N 1.34774 * 120.00130 * 359.69153 * 7 6 5 10 10 C 1.46499 * 120.00343 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.27328 * 35.63622 * 10 9 7 12 12 C 1.53995 * 110.30895 * 273.55067 * 10 9 7 13 13 N 1.47912 * 107.05535 * 242.30824 * 12 10 9 14 14 C 1.46901 * 110.99681 * 214.15681 * 13 12 10 15 15 C 1.50701 * 109.46921 * 169.99814 * 14 13 12 16 16 O 1.21294 * 119.99849 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99795 * 179.97438 * 15 14 13 18 18 C 1.37101 * 119.99707 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99704 * 359.97438 * 18 17 15 20 20 C 1.38941 * 119.99927 * 180.02562 * 18 17 15 21 21 N 1.31417 * 120.00180 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00273 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46986 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47457 * 119.99901 * 22 20 18 25 25 H 1.48501 * 109.47104 * 239.99973 * 22 20 18 26 26 C 1.48534 * 105.81750 * 334.66922 * 13 12 10 27 27 C 1.54594 * 110.30875 * 157.83294 * 10 9 7 28 28 H 1.09000 * 110.72653 * 22.51536 * 27 10 9 29 29 O 1.42900 * 110.72322 * 259.41178 * 27 10 9 30 30 H 1.08997 * 109.47036 * 269.95093 * 1 2 3 31 31 H 1.08994 * 109.47373 * 29.95918 * 1 2 3 32 32 H 1.09005 * 109.46518 * 149.95734 * 1 2 3 33 33 H 1.08000 * 125.42531 * 180.02562 * 4 3 2 34 34 H 0.97006 * 120.00122 * 0.02562 * 9 7 6 35 35 H 1.08997 * 109.92080 * 122.95760 * 12 10 9 36 36 H 1.08996 * 109.91547 * 1.65655 * 12 10 9 37 37 H 1.09002 * 109.47401 * 49.99842 * 14 13 12 38 38 H 1.09001 * 109.46874 * 289.99855 * 14 13 12 39 39 H 0.96995 * 120.00011 * 0.02562 * 17 15 14 40 40 H 0.97000 * 119.99884 * 180.02562 * 21 20 18 41 41 H 1.08997 * 110.66294 * 157.64845 * 26 13 12 42 42 H 1.09001 * 110.66815 * 280.76799 * 26 13 12 43 43 H 0.96705 * 114.00059 * 180.02562 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0779 0.0000 4 6 3.5451 0.6901 -0.0006 5 8 3.5890 -0.6459 0.0049 6 6 2.3138 -1.0991 -0.0007 7 6 1.8828 -2.5016 -0.0011 8 8 0.6967 -2.7737 -0.0006 9 7 2.8006 -3.4886 -0.0018 10 6 2.3704 -4.8890 -0.0016 11 1 1.4646 -5.0059 -0.5967 12 6 2.1289 -5.3737 1.4400 13 7 3.0879 -6.4705 1.6952 14 6 2.5019 -7.4870 2.5792 15 6 3.4011 -8.6957 2.6201 16 8 4.4292 -8.7088 1.9765 17 7 3.0634 -9.7616 3.3726 18 6 3.8818 -10.8610 3.4102 19 1 4.7967 -10.8729 2.8365 20 6 3.5334 -11.9601 4.1855 21 7 2.4198 -11.9457 4.8831 22 14 4.6487 -13.4578 4.2374 23 1 5.8318 -13.2241 3.3710 24 1 5.0958 -13.6939 5.6336 25 1 3.9046 -14.6462 3.7483 26 6 3.4099 -7.0448 0.3637 27 6 3.4959 -5.7961 -0.5495 28 1 4.4664 -5.3104 -0.4485 29 8 3.2462 -6.1442 -1.9128 30 1 -0.3633 -0.0009 1.0276 31 1 -0.3634 0.8903 -0.5132 32 1 -0.3632 -0.8897 -0.5145 33 1 4.4042 1.3445 -0.0003 34 1 3.7461 -3.2717 -0.0017 35 1 1.1081 -5.7419 1.5419 36 1 2.3038 -4.5572 2.1405 37 1 1.5215 -7.7762 2.2006 38 1 2.3972 -7.0778 3.5840 39 1 2.2415 -9.7510 3.8875 40 1 2.1768 -12.7129 5.4247 41 1 4.3658 -7.5678 0.3914 42 1 2.6150 -7.7117 0.0299 43 1 3.9234 -6.7131 -2.3038 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192071819.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:29 Heat of formation + Delta-G solvation = -75.454984 kcal Electronic energy + Delta-G solvation = -28909.742713 eV Core-core repulsion = 24571.446521 eV Total energy + Delta-G solvation = -4338.296192 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.82874 -40.36118 -39.07293 -37.85393 -35.89792 -35.76102 -34.57597 -33.87908 -32.05445 -31.37553 -30.34101 -28.50959 -27.77631 -26.45830 -24.51213 -23.95873 -22.29928 -21.68403 -21.00360 -20.60803 -19.35430 -18.63165 -17.93835 -17.65067 -17.27487 -16.88512 -16.48269 -16.05879 -15.34580 -15.08128 -14.94964 -14.81332 -14.73128 -14.36753 -13.98934 -13.81038 -13.59543 -13.38782 -13.19220 -13.10988 -12.62747 -12.53766 -12.49797 -12.17540 -11.78471 -11.60099 -11.49200 -11.38662 -11.28324 -11.06967 -10.70469 -10.52766 -10.38048 -10.28847 -10.05811 -9.59600 -9.55802 -9.23238 -8.49765 -8.11638 -7.99622 -6.48006 -3.89297 0.43952 2.03277 2.05782 2.74291 2.80157 3.11774 3.23088 3.29536 3.63992 3.73388 3.81529 4.08524 4.29945 4.32117 4.34574 4.49984 4.79253 4.92643 5.03081 5.07917 5.09527 5.19017 5.28284 5.33112 5.35821 5.50044 5.56119 5.60693 5.72459 5.72577 5.83027 5.95185 6.04087 6.15671 6.18307 6.42818 6.92962 7.01479 7.10029 7.21734 7.49277 7.51147 7.71171 7.98821 8.53605 9.10826 9.46240 9.96824 10.69494 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025383 B = 0.002053 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.814639 B =13632.519506 C =13909.434363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.081 3.919 3 N -0.495 5.495 4 C 0.204 3.796 5 O -0.191 6.191 6 C -0.115 4.115 7 C 0.611 3.389 8 O -0.511 6.511 9 N -0.704 5.704 10 C 0.143 3.857 11 H 0.109 0.891 12 C 0.026 3.974 13 N -0.490 5.490 14 C 0.035 3.965 15 C 0.441 3.559 16 O -0.584 6.584 17 N -0.559 5.559 18 C -0.300 4.300 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.899 5.899 22 Si 0.930 3.070 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.281 1.281 26 C 0.011 3.989 27 C 0.091 3.909 28 H 0.076 0.924 29 O -0.562 6.562 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.257 0.743 34 H 0.407 0.593 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.053 0.947 38 H 0.093 0.907 39 H 0.393 0.607 40 H 0.272 0.728 41 H 0.126 0.874 42 H 0.051 0.949 43 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.299 21.576 -9.781 23.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.043 4.043 3 N -0.224 5.224 4 C -0.021 4.021 5 O -0.077 6.077 6 C -0.170 4.170 7 C 0.396 3.604 8 O -0.388 6.388 9 N -0.354 5.354 10 C 0.038 3.962 11 H 0.127 0.873 12 C -0.104 4.104 13 N -0.216 5.216 14 C -0.096 4.096 15 C 0.227 3.773 16 O -0.469 6.469 17 N -0.195 5.195 18 C -0.430 4.430 19 H 0.122 0.878 20 C -0.179 4.179 21 N -0.540 5.540 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.207 1.207 26 C -0.117 4.117 27 C 0.031 3.969 28 H 0.094 0.906 29 O -0.368 6.368 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.273 0.727 34 H 0.242 0.758 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.111 0.889 39 H 0.226 0.774 40 H 0.082 0.918 41 H 0.144 0.856 42 H 0.069 0.931 43 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -0.742 22.325 -9.719 24.361 hybrid contribution 0.598 -1.809 0.156 1.911 sum -0.144 20.517 -9.564 22.637 Atomic orbital electron populations 1.20420 0.85194 1.04470 1.03904 1.22103 0.98484 0.86293 0.97377 1.70372 1.01367 1.31431 1.19220 1.28369 0.97656 0.79381 0.96706 1.84497 1.29590 1.24500 1.69078 1.22890 0.81493 0.96206 1.16447 1.16283 0.85819 0.81314 0.76955 1.90881 1.15640 1.81808 1.50459 1.45916 1.09898 1.05671 1.73962 1.21815 0.98995 0.78776 0.96610 0.87321 1.23371 0.95822 0.96115 0.95044 1.64599 1.37203 1.08690 1.11084 1.22141 0.96253 0.92520 0.98717 1.19653 0.88324 0.84480 0.84844 1.90415 1.27234 1.82136 1.47141 1.41861 1.22848 1.13728 1.41061 1.19743 1.04563 0.92086 1.26561 0.87783 1.25292 0.96971 0.99476 0.96210 1.69622 1.23021 1.31914 1.29454 0.85785 0.79815 0.80548 0.78104 1.19205 1.20694 1.20732 1.24138 1.05223 0.95113 0.87252 1.23006 0.96828 0.95155 0.81928 0.90609 1.86453 1.52876 1.72311 1.25115 0.89818 0.90413 0.88538 0.72708 0.75781 0.92316 0.89640 0.92936 0.88895 0.77373 0.91813 0.85595 0.93093 0.76641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 9.87 36.01 0.36 -0.40 16 2 C 0.08 0.86 7.16 -82.46 -0.59 0.27 16 3 N -0.49 -4.84 11.26 -10.88 -0.12 -4.97 16 4 C 0.20 1.37 13.21 52.24 0.69 2.06 16 5 O -0.19 -1.65 10.57 4.44 0.05 -1.61 16 6 C -0.12 -1.24 7.18 -36.84 -0.26 -1.50 16 7 C 0.61 7.31 7.78 -12.84 -0.10 7.21 16 8 O -0.51 -7.24 14.49 5.20 0.08 -7.16 16 9 N -0.70 -7.61 5.02 -53.78 -0.27 -7.88 16 10 C 0.14 1.77 3.06 -66.57 -0.20 1.56 16 11 H 0.11 1.50 7.58 -51.93 -0.39 1.10 16 12 C 0.03 0.34 6.49 -2.75 -0.02 0.33 16 13 N -0.49 -7.83 5.26 -231.88 -1.22 -9.05 16 14 C 0.04 0.62 5.52 -4.97 -0.03 0.59 16 15 C 0.44 9.99 7.49 -10.98 -0.08 9.91 16 16 O -0.58 -14.69 13.10 5.55 0.07 -14.61 16 17 N -0.56 -13.79 5.29 -10.96 -0.06 -13.85 16 18 C -0.30 -8.14 9.68 -14.94 -0.14 -8.28 16 19 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.09 13.05 55.50 0.72 -23.37 16 22 Si 0.93 20.61 29.55 -169.99 -5.02 15.59 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 C 0.01 0.17 5.03 -1.90 -0.01 0.16 16 27 C 0.09 1.11 4.14 -24.87 -0.10 1.01 16 28 H 0.08 0.83 7.74 -51.93 -0.40 0.43 16 29 O -0.56 -6.59 13.41 -35.23 -0.47 -7.06 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.10 0.96 6.47 -51.93 -0.34 0.62 16 33 H 0.26 0.29 8.06 -52.49 -0.42 -0.14 16 34 H 0.41 3.67 8.14 -40.82 -0.33 3.34 16 35 H 0.06 0.78 7.57 -51.93 -0.39 0.38 16 36 H 0.09 1.11 7.92 -51.93 -0.41 0.70 16 37 H 0.05 0.85 7.81 -51.93 -0.41 0.44 16 38 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 39 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 40 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 41 H 0.13 2.28 5.97 -51.93 -0.31 1.97 16 42 H 0.05 0.84 8.02 -51.93 -0.42 0.43 16 43 H 0.39 3.05 9.12 45.56 0.42 3.47 16 LS Contribution 366.60 15.07 5.52 5.52 Total: -1.00 -33.79 366.60 -5.82 -39.61 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -4.51 Total: 15.40 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: -0.59 Total: 13.42 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -0.95 Total: -59.11 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.28 Total: -30.44 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.79 -5.82 -39.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192071819.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.841 kcal (2) G-P(sol) polarization free energy of solvation -33.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds