Wall clock time and date at job start Tue Mar 31 2020 22:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33692 * 126.26801 * 2 1 4 4 C 1.30614 * 108.99427 * 180.02562 * 3 2 1 5 5 O 1.33666 * 109.15233 * 359.73765 * 4 3 2 6 6 C 1.35336 * 107.68601 * 0.42618 * 5 4 3 7 7 C 1.46719 * 126.64601 * 179.83766 * 6 5 4 8 8 O 1.21692 * 120.00308 * 179.68826 * 7 6 5 9 9 N 1.34774 * 120.00130 * 359.69153 * 7 6 5 10 10 C 1.46499 * 120.00343 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.27328 * 35.63622 * 10 9 7 12 12 C 1.53995 * 110.30895 * 273.55067 * 10 9 7 13 13 N 1.47912 * 107.05535 * 242.30824 * 12 10 9 14 14 C 1.46901 * 110.99681 * 214.15681 * 13 12 10 15 15 C 1.50701 * 109.46921 * 169.99814 * 14 13 12 16 16 O 1.21294 * 119.99849 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99795 * 179.97438 * 15 14 13 18 18 C 1.37101 * 119.99707 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99704 * 359.97438 * 18 17 15 20 20 C 1.38941 * 119.99927 * 180.02562 * 18 17 15 21 21 N 1.31417 * 120.00180 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00273 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46986 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47457 * 119.99901 * 22 20 18 25 25 H 1.48501 * 109.47104 * 239.99973 * 22 20 18 26 26 C 1.48534 * 105.81750 * 334.66922 * 13 12 10 27 27 C 1.54594 * 110.30875 * 157.83294 * 10 9 7 28 28 H 1.09000 * 110.72653 * 22.51536 * 27 10 9 29 29 O 1.42900 * 110.72322 * 259.41178 * 27 10 9 30 30 H 1.08997 * 109.47036 * 269.95093 * 1 2 3 31 31 H 1.08994 * 109.47373 * 29.95918 * 1 2 3 32 32 H 1.09005 * 109.46518 * 149.95734 * 1 2 3 33 33 H 1.08000 * 125.42531 * 180.02562 * 4 3 2 34 34 H 0.97006 * 120.00122 * 0.02562 * 9 7 6 35 35 H 1.08997 * 109.92080 * 122.95760 * 12 10 9 36 36 H 1.08996 * 109.91547 * 1.65655 * 12 10 9 37 37 H 1.09002 * 109.47401 * 49.99842 * 14 13 12 38 38 H 1.09001 * 109.46874 * 289.99855 * 14 13 12 39 39 H 0.96995 * 120.00011 * 0.02562 * 17 15 14 40 40 H 0.97000 * 119.99884 * 180.02562 * 21 20 18 41 41 H 1.08997 * 110.66294 * 157.64845 * 26 13 12 42 42 H 1.09001 * 110.66815 * 280.76799 * 26 13 12 43 43 H 0.96705 * 114.00059 * 180.02562 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0779 0.0000 4 6 3.5451 0.6901 -0.0006 5 8 3.5890 -0.6459 0.0049 6 6 2.3138 -1.0991 -0.0007 7 6 1.8828 -2.5016 -0.0011 8 8 0.6967 -2.7737 -0.0006 9 7 2.8006 -3.4886 -0.0018 10 6 2.3704 -4.8890 -0.0016 11 1 1.4646 -5.0059 -0.5967 12 6 2.1289 -5.3737 1.4400 13 7 3.0879 -6.4705 1.6952 14 6 2.5019 -7.4870 2.5792 15 6 3.4011 -8.6957 2.6201 16 8 4.4292 -8.7088 1.9765 17 7 3.0634 -9.7616 3.3726 18 6 3.8818 -10.8610 3.4102 19 1 4.7967 -10.8729 2.8365 20 6 3.5334 -11.9601 4.1855 21 7 2.4198 -11.9457 4.8831 22 14 4.6487 -13.4578 4.2374 23 1 5.8318 -13.2241 3.3710 24 1 5.0958 -13.6939 5.6336 25 1 3.9046 -14.6462 3.7483 26 6 3.4099 -7.0448 0.3637 27 6 3.4959 -5.7961 -0.5495 28 1 4.4664 -5.3104 -0.4485 29 8 3.2462 -6.1442 -1.9128 30 1 -0.3633 -0.0009 1.0276 31 1 -0.3634 0.8903 -0.5132 32 1 -0.3632 -0.8897 -0.5145 33 1 4.4042 1.3445 -0.0003 34 1 3.7461 -3.2717 -0.0017 35 1 1.1081 -5.7419 1.5419 36 1 2.3038 -4.5572 2.1405 37 1 1.5215 -7.7762 2.2006 38 1 2.3972 -7.0778 3.5840 39 1 2.2415 -9.7510 3.8875 40 1 2.1768 -12.7129 5.4247 41 1 4.3658 -7.5678 0.3914 42 1 2.6150 -7.7117 0.0299 43 1 3.9234 -6.7131 -2.3038 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192071819.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:28 Heat of formation + Delta-G solvation = -108.284408 kcal Electronic energy + Delta-G solvation = -28911.166303 eV Core-core repulsion = 24571.446521 eV Total energy + Delta-G solvation = -4339.719782 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.48873 -41.42884 -40.40731 -39.30425 -36.95131 -36.55248 -35.98354 -35.38289 -33.33174 -32.78769 -31.52482 -29.51227 -28.78140 -27.88344 -26.08171 -24.82695 -23.12853 -22.80892 -21.86546 -21.62384 -21.09322 -19.90854 -19.42710 -18.67074 -17.97702 -17.80557 -17.54349 -17.37742 -16.70059 -16.39178 -16.29861 -15.91459 -15.82685 -15.59487 -15.33170 -15.25385 -14.63724 -14.38705 -14.27687 -14.05459 -13.83304 -13.83097 -13.54507 -13.45164 -13.24275 -13.04048 -12.91323 -12.61818 -12.41020 -12.17167 -12.11991 -12.01696 -11.82476 -11.48843 -11.42215 -11.05973 -10.54528 -10.19547 -10.02264 -9.97351 -9.46497 -8.47698 -5.96409 -0.27861 1.35171 1.36144 1.37747 1.42086 1.55920 1.89163 1.98542 2.01463 2.26856 2.61642 3.06543 3.13699 3.18852 3.25654 3.51578 3.62071 3.64603 3.83021 3.94771 4.18025 4.25592 4.29814 4.38073 4.40075 4.42319 4.49364 4.58978 4.66046 4.69245 4.80404 4.81748 5.00302 5.08368 5.21316 5.30472 5.40811 5.69932 5.78684 6.02521 6.16593 6.52289 6.57978 6.73208 6.84916 7.11129 7.53380 8.07722 8.69881 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025383 B = 0.002053 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.814639 B =13632.519506 C =13909.434363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.075 3.925 3 N -0.526 5.526 4 C 0.232 3.768 5 O -0.191 6.191 6 C -0.138 4.138 7 C 0.612 3.388 8 O -0.540 6.540 9 N -0.694 5.694 10 C 0.150 3.850 11 H 0.096 0.904 12 C 0.031 3.969 13 N -0.499 5.499 14 C 0.045 3.955 15 C 0.441 3.559 16 O -0.611 6.611 17 N -0.572 5.572 18 C -0.329 4.329 19 H 0.083 0.917 20 C -0.015 4.015 21 N -0.921 5.921 22 Si 0.994 3.006 23 H -0.271 1.271 24 H -0.272 1.272 25 H -0.273 1.273 26 C 0.013 3.987 27 C 0.107 3.893 28 H 0.095 0.905 29 O -0.570 6.570 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.309 0.691 34 H 0.417 0.583 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.112 0.888 39 H 0.396 0.604 40 H 0.277 0.723 41 H 0.098 0.902 42 H 0.036 0.964 43 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.511 23.076 -9.977 25.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.049 4.049 3 N -0.256 5.256 4 C 0.008 3.992 5 O -0.078 6.078 6 C -0.193 4.193 7 C 0.398 3.602 8 O -0.419 6.419 9 N -0.345 5.345 10 C 0.045 3.955 11 H 0.114 0.886 12 C -0.098 4.098 13 N -0.225 5.225 14 C -0.087 4.087 15 C 0.229 3.771 16 O -0.497 6.497 17 N -0.209 5.209 18 C -0.459 4.459 19 H 0.101 0.899 20 C -0.215 4.215 21 N -0.562 5.562 22 Si 0.818 3.182 23 H -0.195 1.195 24 H -0.198 1.198 25 H -0.198 1.198 26 C -0.115 4.115 27 C 0.047 3.953 28 H 0.112 0.888 29 O -0.378 6.378 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.324 0.676 34 H 0.254 0.746 35 H 0.080 0.920 36 H 0.111 0.889 37 H 0.087 0.913 38 H 0.130 0.870 39 H 0.229 0.771 40 H 0.087 0.913 41 H 0.116 0.884 42 H 0.055 0.945 43 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 0.076 23.843 -9.925 25.826 hybrid contribution 0.403 -2.135 0.161 2.179 sum 0.478 21.708 -9.764 23.807 Atomic orbital electron populations 1.20416 0.84869 1.04418 1.04164 1.22365 0.99135 0.86719 0.96649 1.70409 1.02596 1.31381 1.21171 1.29618 0.98224 0.78935 0.92469 1.84504 1.28499 1.25455 1.69331 1.22551 0.82401 0.95523 1.18800 1.16416 0.85494 0.81953 0.76316 1.90862 1.16770 1.82436 1.51820 1.45761 1.10357 1.04795 1.73634 1.21594 0.98572 0.79662 0.95703 0.88569 1.23368 0.95325 0.95215 0.95898 1.64580 1.38136 1.08668 1.11083 1.22049 0.95493 0.90728 1.00403 1.20556 0.88357 0.85145 0.83056 1.90413 1.28696 1.82866 1.47730 1.41935 1.22914 1.14017 1.42025 1.19706 1.04763 0.93791 1.27622 0.89925 1.26071 0.98281 1.01685 0.95454 1.69686 1.23985 1.32837 1.29704 0.84852 0.77906 0.77203 0.78274 1.19531 1.19757 1.19789 1.23970 1.03092 0.96360 0.88095 1.22810 0.97604 0.93337 0.81562 0.88764 1.86429 1.54046 1.72763 1.24553 0.89361 0.89263 0.89706 0.67597 0.74582 0.92007 0.88920 0.91311 0.87025 0.77076 0.91334 0.88365 0.94541 0.74735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.46 9.87 71.24 0.70 -0.75 16 2 C 0.07 1.51 7.16 41.83 0.30 1.81 16 3 N -0.53 -9.23 11.26 -303.13 -3.41 -12.64 16 4 C 0.23 2.36 13.21 130.42 1.72 4.08 16 5 O -0.19 -2.86 10.57 -7.03 -0.07 -2.93 16 6 C -0.14 -2.79 7.18 24.04 0.17 -2.62 16 7 C 0.61 14.19 7.78 86.46 0.67 14.86 16 8 O -0.54 -15.26 14.49 -4.32 -0.06 -15.32 16 9 N -0.69 -14.08 5.02 -442.29 -2.22 -16.30 16 10 C 0.15 3.56 3.06 45.87 0.14 3.70 16 11 H 0.10 2.60 7.58 -2.39 -0.02 2.58 16 12 C 0.03 0.79 6.49 86.44 0.56 1.35 16 13 N -0.50 -15.56 5.26 -887.55 -4.67 -20.23 16 14 C 0.04 1.53 5.52 85.56 0.47 2.00 16 15 C 0.44 20.27 7.49 87.66 0.66 20.93 16 16 O -0.61 -31.45 13.10 -3.07 -0.04 -31.49 16 17 N -0.57 -28.77 5.29 -306.98 -1.62 -30.39 16 18 C -0.33 -18.26 9.68 84.04 0.81 -17.44 16 19 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 20 C -0.02 -0.80 5.50 84.92 0.47 -0.34 16 21 N -0.92 -49.35 13.05 21.66 0.28 -49.07 16 22 Si 0.99 42.26 29.55 68.60 2.03 44.29 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 C 0.01 0.41 5.03 86.65 0.44 0.85 16 27 C 0.11 2.50 4.14 31.80 0.13 2.63 16 28 H 0.09 1.88 7.74 -2.39 -0.02 1.86 16 29 O -0.57 -12.66 13.41 -148.98 -2.00 -14.66 16 30 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 1.71 6.47 -2.38 -0.02 1.70 16 33 H 0.31 -0.84 8.06 -2.91 -0.02 -0.86 16 34 H 0.42 6.73 8.14 -92.70 -0.75 5.97 16 35 H 0.06 1.56 7.57 -2.39 -0.02 1.54 16 36 H 0.09 2.26 7.92 -2.39 -0.02 2.24 16 37 H 0.07 2.16 7.81 -2.39 -0.02 2.14 16 38 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 39 H 0.40 19.10 7.90 -92.71 -0.73 18.37 16 40 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 41 H 0.10 3.64 5.97 -2.39 -0.01 3.63 16 42 H 0.04 1.22 8.02 -2.39 -0.02 1.20 16 43 H 0.40 5.86 9.12 -74.05 -0.68 5.19 16 Total: -1.00 -74.14 366.60 -5.60 -79.73 By element: Atomic # 1 Polarization: 39.02 SS G_CDS: -1.06 Total: 37.96 kcal Atomic # 6 Polarization: 23.81 SS G_CDS: 7.25 Total: 31.06 kcal Atomic # 7 Polarization: -117.00 SS G_CDS: -11.64 Total: -128.64 kcal Atomic # 8 Polarization: -62.22 SS G_CDS: -2.17 Total: -64.40 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -74.14 -5.60 -79.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192071819.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.552 kcal (2) G-P(sol) polarization free energy of solvation -74.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds