Wall clock time and date at job start Tue Mar 31 2020 22:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29931 * 125.37419 * 2 1 4 4 C 1.36071 * 108.47684 * 179.90057 * 3 2 1 5 5 C 1.47419 * 126.45086 * 180.10913 * 4 3 2 6 6 O 1.21608 * 119.99916 * 180.29853 * 5 4 3 7 7 N 1.34784 * 119.99730 * 0.29621 * 5 4 3 8 8 C 1.46503 * 119.99575 * 180.02562 * 7 5 4 9 9 H 1.08998 * 110.63023 * 36.65224 * 8 7 5 10 10 C 1.54315 * 110.70452 * 273.54541 * 8 7 5 11 11 N 1.47448 * 107.23515 * 219.33681 * 10 8 7 12 12 C 1.46893 * 111.00058 * 236.74313 * 11 10 8 13 13 C 1.50702 * 109.47210 * 189.99734 * 12 11 10 14 14 O 1.21286 * 119.99620 * 0.02562 * 13 12 11 15 15 N 1.34772 * 119.99785 * 179.97438 * 13 12 11 16 16 C 1.37101 * 119.99696 * 179.97438 * 15 13 12 17 17 H 1.08000 * 120.00297 * 359.97438 * 16 15 13 18 18 C 1.38960 * 120.00149 * 180.02562 * 16 15 13 19 19 N 1.31416 * 119.99618 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99894 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47384 * 59.99954 * 20 18 16 22 22 H 1.48500 * 109.46676 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47180 * 299.99564 * 20 18 16 24 24 C 1.47849 * 108.56191 * 359.01184 * 11 10 8 25 25 C 1.54903 * 104.79950 * 24.09510 * 24 11 10 26 26 H 1.08995 * 110.98837 * 81.02130 * 25 24 11 27 27 O 1.42899 * 110.98956 * 204.83991 * 25 24 11 28 28 C 1.36093 * 107.09794 * 0.36035 * 4 3 2 29 29 O 1.34043 * 125.38006 * 180.30924 * 2 1 3 30 30 H 1.09001 * 109.46953 * 179.71648 * 1 2 3 31 31 H 1.09000 * 109.47318 * 299.71246 * 1 2 3 32 32 H 1.09000 * 109.47161 * 59.71877 * 1 2 3 33 33 H 0.96993 * 119.99833 * 359.97438 * 7 5 4 34 34 H 1.09002 * 109.88826 * 338.74219 * 10 8 7 35 35 H 1.08999 * 109.88961 * 99.92943 * 10 8 7 36 36 H 1.09004 * 109.47101 * 309.99895 * 12 11 10 37 37 H 1.09009 * 109.47005 * 69.99572 * 12 11 10 38 38 H 0.97001 * 120.00292 * 359.97438 * 15 13 12 39 39 H 0.96992 * 119.99668 * 180.02562 * 19 18 16 40 40 H 1.09001 * 110.37207 * 142.92847 * 24 11 10 41 41 H 1.09000 * 110.37008 * 265.15489 * 24 11 10 42 42 H 0.96701 * 114.00159 * 292.26624 * 27 25 24 43 43 H 1.08002 * 126.51853 * 179.78142 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2592 1.0594 0.0000 4 6 3.5612 0.6639 0.0022 5 6 4.7439 1.5440 0.0053 6 8 5.8604 1.0620 0.0016 7 7 4.5877 2.8827 0.0121 8 6 5.7631 3.7572 0.0146 9 1 6.5588 3.3329 -0.5977 10 6 6.2563 4.0042 1.4558 11 7 6.6668 5.4178 1.5408 12 6 8.0641 5.5348 1.9786 13 6 8.3740 6.9765 2.2898 14 8 7.5151 7.8230 2.1600 15 7 9.6051 7.3248 2.7132 16 6 9.8872 8.6364 2.9958 17 1 9.1230 9.3905 2.8787 18 6 11.1567 8.9957 3.4319 19 7 12.0871 8.0784 3.5729 20 14 11.5407 10.7826 3.8175 21 1 10.6416 11.2600 4.8986 22 1 12.9535 10.9010 4.2596 23 1 11.3328 11.6075 2.6003 24 6 6.4723 6.0449 0.2161 25 6 5.3886 5.1808 -0.4755 26 1 4.3912 5.4606 -0.1365 27 8 5.4890 5.2755 -1.8978 28 6 3.5660 -0.6970 -0.0046 29 8 2.2832 -1.0929 -0.0059 30 1 -0.3633 -1.0277 -0.0051 31 1 -0.3634 0.5094 0.8925 32 1 -0.3633 0.5182 -0.8874 33 1 3.6972 3.2670 0.0146 34 1 5.4496 3.8092 2.1623 35 1 7.1065 3.3575 1.6727 36 1 8.2168 4.9293 2.8721 37 1 8.7241 5.1844 1.1850 38 1 10.2917 6.6476 2.8180 39 1 12.9731 8.3291 3.8776 40 1 6.1238 7.0714 0.3297 41 1 7.4005 6.0211 -0.3549 42 1 5.2644 6.1473 -2.2508 43 1 4.4362 -1.3366 -0.0083 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192445309.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:30 Heat of formation + Delta-G solvation = -80.428412 kcal Electronic energy + Delta-G solvation = -28545.332884 eV Core-core repulsion = 24206.821028 eV Total energy + Delta-G solvation = -4338.511856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.84282 -40.27127 -38.95685 -37.78088 -35.84794 -35.34710 -34.49275 -33.78691 -32.67712 -31.25407 -30.18457 -28.45533 -28.04866 -26.56662 -24.65083 -23.92489 -22.06530 -21.53898 -21.02250 -20.55450 -19.22589 -18.55909 -17.87936 -17.53382 -17.33532 -16.85693 -16.57551 -15.92227 -15.34523 -15.05670 -14.84699 -14.69457 -14.48829 -14.33199 -14.14550 -13.80168 -13.68713 -13.66077 -13.11609 -13.04875 -13.00417 -12.80502 -12.44962 -12.11240 -11.87318 -11.64635 -11.48735 -11.30577 -11.25719 -10.97722 -10.70473 -10.53394 -10.42874 -10.19943 -10.08903 -9.50404 -9.46803 -9.29226 -8.47066 -7.96676 -7.89855 -6.39593 -3.80508 0.72196 1.59275 2.14407 2.76549 3.00814 3.21194 3.26866 3.30984 3.43434 3.70687 3.92552 4.14454 4.30560 4.33557 4.36213 4.51691 4.75926 4.79268 4.85301 4.92684 5.01107 5.16056 5.19785 5.24476 5.27528 5.29684 5.31909 5.57965 5.67404 5.81104 5.83806 5.87219 5.96736 6.19616 6.28818 6.32273 6.97412 7.09338 7.15202 7.30669 7.49248 7.56635 7.89766 8.07592 8.63696 9.19771 9.56435 10.08154 10.78117 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027142 B = 0.001937 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.381313 B =14451.278543 C =14778.060688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.197 3.803 3 N -0.462 5.462 4 C -0.070 4.070 5 C 0.604 3.396 6 O -0.533 6.533 7 N -0.697 5.697 8 C 0.133 3.867 9 H 0.106 0.894 10 C 0.033 3.967 11 N -0.497 5.497 12 C 0.039 3.961 13 C 0.445 3.555 14 O -0.579 6.579 15 N -0.564 5.564 16 C -0.299 4.299 17 H 0.102 0.898 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.931 3.069 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.026 3.974 25 C 0.087 3.913 26 H 0.079 0.921 27 O -0.559 6.559 28 C 0.014 3.986 29 O -0.197 6.197 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.410 0.590 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.052 0.948 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.102 0.898 41 H 0.056 0.944 42 H 0.384 0.616 43 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.598 -17.908 -8.795 28.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.012 4.012 3 N -0.193 5.193 4 C -0.190 4.190 5 C 0.389 3.611 6 O -0.410 6.410 7 N -0.347 5.347 8 C 0.027 3.973 9 H 0.123 0.877 10 C -0.096 4.096 11 N -0.222 5.222 12 C -0.093 4.093 13 C 0.230 3.770 14 O -0.463 6.463 15 N -0.201 5.201 16 C -0.429 4.429 17 H 0.120 0.880 18 C -0.180 4.180 19 N -0.543 5.543 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.200 1.200 24 C -0.103 4.103 25 C 0.026 3.974 26 H 0.097 0.903 27 O -0.364 6.364 28 C -0.060 4.060 29 O -0.083 6.083 30 H 0.109 0.891 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.246 0.754 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.225 0.775 39 H 0.082 0.918 40 H 0.120 0.880 41 H 0.075 0.925 42 H 0.232 0.768 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -20.522 -17.403 -8.393 28.186 hybrid contribution 1.082 0.101 -0.261 1.118 sum -19.440 -17.302 -8.653 27.425 Atomic orbital electron populations 1.20330 0.80757 1.05034 1.05461 1.26365 0.96715 0.78252 0.99864 1.70745 1.00681 1.30014 1.17889 1.21758 0.92058 0.93057 1.12092 1.16721 0.86214 0.81860 0.76256 1.90848 1.24232 1.75323 1.50620 1.45652 1.10251 1.05125 1.73722 1.22212 0.88704 0.88949 0.97410 0.87651 1.23281 1.01457 0.89890 0.94985 1.63242 1.21208 1.11418 1.26378 1.22175 0.88406 0.97779 1.00925 1.19684 0.83657 0.89191 0.84463 1.90492 1.46707 1.51501 1.57615 1.41851 1.10219 1.09675 1.58378 1.19641 0.97104 0.84621 1.41491 0.87984 1.25268 0.95406 0.99902 0.97412 1.69607 1.04125 1.33613 1.46960 0.85913 0.77220 0.82043 0.78997 1.19910 1.21001 1.19959 1.23654 0.98029 1.00201 0.88381 1.23204 0.99004 0.93996 0.81166 0.90273 1.86481 1.92416 1.37816 1.19687 1.25304 0.84832 0.95671 1.00223 1.84406 1.16740 1.37943 1.69222 0.89125 0.88139 0.88194 0.75352 0.89745 0.91321 0.89081 0.92976 0.77473 0.91832 0.88021 0.92542 0.76787 0.75191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.18 10.51 36.01 0.38 0.20 16 2 C 0.20 1.51 8.30 -13.08 -0.11 1.40 16 3 N -0.46 -4.67 11.06 -7.65 -0.08 -4.76 16 4 C -0.07 -0.76 6.99 -83.02 -0.58 -1.34 16 5 C 0.60 7.80 7.81 -12.52 -0.10 7.70 16 6 O -0.53 -8.24 16.61 5.27 0.09 -8.15 16 7 N -0.70 -8.28 5.13 -53.11 -0.27 -8.55 16 8 C 0.13 1.75 2.97 -66.11 -0.20 1.55 16 9 H 0.11 1.57 7.69 -51.93 -0.40 1.17 16 10 C 0.03 0.47 6.61 -2.83 -0.02 0.45 16 11 N -0.50 -8.37 4.86 -232.69 -1.13 -9.50 16 12 C 0.04 0.71 5.05 -4.98 -0.03 0.68 16 13 C 0.44 10.57 7.58 -10.99 -0.08 10.48 16 14 O -0.58 -15.51 14.61 5.55 0.08 -15.43 16 15 N -0.56 -14.44 5.29 -10.96 -0.06 -14.50 16 16 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 17 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 18 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 19 N -0.90 -24.75 13.05 55.50 0.72 -24.02 16 20 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 C 0.03 0.40 5.48 -2.30 -0.01 0.39 16 25 C 0.09 1.07 4.03 -24.59 -0.10 0.97 16 26 H 0.08 0.88 8.00 -51.93 -0.42 0.46 16 27 O -0.56 -6.59 13.47 -35.23 -0.47 -7.06 16 28 C 0.01 0.12 11.95 29.96 0.36 0.47 16 29 O -0.20 -1.58 10.73 6.54 0.07 -1.51 16 30 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.41 4.31 8.25 -40.82 -0.34 3.98 16 34 H 0.08 1.15 8.03 -51.93 -0.42 0.74 16 35 H 0.07 0.96 7.55 -51.93 -0.39 0.57 16 36 H 0.09 1.53 8.03 -51.93 -0.42 1.11 16 37 H 0.05 0.89 7.85 -51.92 -0.41 0.48 16 38 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 39 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.10 1.76 7.38 -51.93 -0.38 1.38 16 41 H 0.06 0.93 7.62 -51.93 -0.40 0.53 16 42 H 0.38 2.95 9.12 45.56 0.42 3.37 16 43 H 0.23 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 373.51 15.07 5.63 5.63 Total: -1.00 -35.77 373.51 -5.85 -41.62 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -4.67 Total: 15.14 kcal Atomic # 6 Polarization: 15.67 SS G_CDS: -0.73 Total: 14.94 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: -0.82 Total: -61.33 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.24 Total: -32.15 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.77 -5.85 -41.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192445309.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.809 kcal (2) G-P(sol) polarization free energy of solvation -35.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds