Wall clock time and date at job start Tue Mar 31 2020 22:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29931 * 125.37419 * 2 1 4 4 C 1.36071 * 108.47684 * 179.90057 * 3 2 1 5 5 C 1.47419 * 126.45086 * 180.10913 * 4 3 2 6 6 O 1.21608 * 119.99916 * 180.29853 * 5 4 3 7 7 N 1.34784 * 119.99730 * 0.29621 * 5 4 3 8 8 C 1.46503 * 119.99575 * 180.02562 * 7 5 4 9 9 H 1.08998 * 110.63023 * 36.65224 * 8 7 5 10 10 C 1.54315 * 110.70452 * 273.54541 * 8 7 5 11 11 N 1.47448 * 107.23515 * 219.33681 * 10 8 7 12 12 C 1.46893 * 111.00058 * 236.74313 * 11 10 8 13 13 C 1.50702 * 109.47210 * 189.99734 * 12 11 10 14 14 O 1.21286 * 119.99620 * 0.02562 * 13 12 11 15 15 N 1.34772 * 119.99785 * 179.97438 * 13 12 11 16 16 C 1.37101 * 119.99696 * 179.97438 * 15 13 12 17 17 H 1.08000 * 120.00297 * 359.97438 * 16 15 13 18 18 C 1.38960 * 120.00149 * 180.02562 * 16 15 13 19 19 N 1.31416 * 119.99618 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99894 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47384 * 59.99954 * 20 18 16 22 22 H 1.48500 * 109.46676 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47180 * 299.99564 * 20 18 16 24 24 C 1.47849 * 108.56191 * 359.01184 * 11 10 8 25 25 C 1.54903 * 104.79950 * 24.09510 * 24 11 10 26 26 H 1.08995 * 110.98837 * 81.02130 * 25 24 11 27 27 O 1.42899 * 110.98956 * 204.83991 * 25 24 11 28 28 C 1.36093 * 107.09794 * 0.36035 * 4 3 2 29 29 O 1.34043 * 125.38006 * 180.30924 * 2 1 3 30 30 H 1.09001 * 109.46953 * 179.71648 * 1 2 3 31 31 H 1.09000 * 109.47318 * 299.71246 * 1 2 3 32 32 H 1.09000 * 109.47161 * 59.71877 * 1 2 3 33 33 H 0.96993 * 119.99833 * 359.97438 * 7 5 4 34 34 H 1.09002 * 109.88826 * 338.74219 * 10 8 7 35 35 H 1.08999 * 109.88961 * 99.92943 * 10 8 7 36 36 H 1.09004 * 109.47101 * 309.99895 * 12 11 10 37 37 H 1.09009 * 109.47005 * 69.99572 * 12 11 10 38 38 H 0.97001 * 120.00292 * 359.97438 * 15 13 12 39 39 H 0.96992 * 119.99668 * 180.02562 * 19 18 16 40 40 H 1.09001 * 110.37207 * 142.92847 * 24 11 10 41 41 H 1.09000 * 110.37008 * 265.15489 * 24 11 10 42 42 H 0.96701 * 114.00159 * 292.26624 * 27 25 24 43 43 H 1.08002 * 126.51853 * 179.78142 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2592 1.0594 0.0000 4 6 3.5612 0.6639 0.0022 5 6 4.7439 1.5440 0.0053 6 8 5.8604 1.0620 0.0016 7 7 4.5877 2.8827 0.0121 8 6 5.7631 3.7572 0.0146 9 1 6.5588 3.3329 -0.5977 10 6 6.2563 4.0042 1.4558 11 7 6.6668 5.4178 1.5408 12 6 8.0641 5.5348 1.9786 13 6 8.3740 6.9765 2.2898 14 8 7.5151 7.8230 2.1600 15 7 9.6051 7.3248 2.7132 16 6 9.8872 8.6364 2.9958 17 1 9.1230 9.3905 2.8787 18 6 11.1567 8.9957 3.4319 19 7 12.0871 8.0784 3.5729 20 14 11.5407 10.7826 3.8175 21 1 10.6416 11.2600 4.8986 22 1 12.9535 10.9010 4.2596 23 1 11.3328 11.6075 2.6003 24 6 6.4723 6.0449 0.2161 25 6 5.3886 5.1808 -0.4755 26 1 4.3912 5.4606 -0.1365 27 8 5.4890 5.2755 -1.8978 28 6 3.5660 -0.6970 -0.0046 29 8 2.2832 -1.0929 -0.0059 30 1 -0.3633 -1.0277 -0.0051 31 1 -0.3634 0.5094 0.8925 32 1 -0.3633 0.5182 -0.8874 33 1 3.6972 3.2670 0.0146 34 1 5.4496 3.8092 2.1623 35 1 7.1065 3.3575 1.6727 36 1 8.2168 4.9293 2.8721 37 1 8.7241 5.1844 1.1850 38 1 10.2917 6.6476 2.8180 39 1 12.9731 8.3291 3.8776 40 1 6.1238 7.0714 0.3297 41 1 7.4005 6.0211 -0.3549 42 1 5.2644 6.1473 -2.2508 43 1 4.4362 -1.3366 -0.0083 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192445309.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:29 Heat of formation + Delta-G solvation = -114.861121 kcal Electronic energy + Delta-G solvation = -28546.825998 eV Core-core repulsion = 24206.821028 eV Total energy + Delta-G solvation = -4340.004970 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.47914 -41.39044 -40.32769 -39.35362 -36.98419 -36.08032 -35.93854 -35.40218 -33.29490 -33.17475 -31.46265 -29.43186 -28.78115 -28.08183 -26.20234 -25.05229 -22.80662 -22.69199 -21.94458 -21.58355 -21.01651 -19.90579 -19.36921 -18.60338 -17.97359 -17.89335 -17.57106 -17.40482 -16.71687 -16.36805 -16.25906 -15.94515 -15.84188 -15.45381 -15.23294 -14.88238 -14.75799 -14.51165 -14.36974 -14.19212 -13.89572 -13.74482 -13.48388 -13.33032 -13.27002 -13.21499 -12.97555 -12.59855 -12.42869 -12.35461 -12.12581 -11.94987 -11.82322 -11.53998 -11.47766 -11.12707 -10.47474 -10.32909 -10.02540 -10.01032 -9.32451 -8.45920 -5.94878 0.01894 0.90894 1.40064 1.41699 1.52849 1.55254 1.87405 2.04518 2.12170 2.27711 2.56134 2.83847 3.07141 3.19132 3.25160 3.50153 3.59733 3.76764 3.78477 3.89058 4.13443 4.23586 4.24978 4.33927 4.39702 4.46280 4.51998 4.57884 4.69612 4.73588 4.75047 4.77283 4.85397 4.94238 5.23159 5.25710 5.40939 5.73038 5.84800 6.03566 6.18956 6.51757 6.60066 6.72195 6.95081 7.12576 7.55776 8.10859 8.71337 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027142 B = 0.001937 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.381313 B =14451.278543 C =14778.060688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.203 3.797 3 N -0.488 5.488 4 C -0.101 4.101 5 C 0.603 3.397 6 O -0.566 6.566 7 N -0.689 5.689 8 C 0.139 3.861 9 H 0.089 0.911 10 C 0.039 3.961 11 N -0.512 5.512 12 C 0.050 3.950 13 C 0.444 3.556 14 O -0.612 6.612 15 N -0.575 5.575 16 C -0.332 4.332 17 H 0.081 0.919 18 C -0.015 4.015 19 N -0.922 5.922 20 Si 0.995 3.005 21 H -0.271 1.271 22 H -0.272 1.272 23 H -0.271 1.271 24 C 0.027 3.973 25 C 0.105 3.895 26 H 0.099 0.901 27 O -0.567 6.567 28 C 0.027 3.973 29 O -0.196 6.196 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.418 0.582 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.110 0.890 37 H 0.068 0.932 38 H 0.395 0.605 39 H 0.277 0.723 40 H 0.081 0.919 41 H 0.045 0.955 42 H 0.402 0.598 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.019 -18.920 -9.001 30.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.006 4.006 3 N -0.219 5.219 4 C -0.219 4.219 5 C 0.390 3.610 6 O -0.445 6.445 7 N -0.339 5.339 8 C 0.033 3.967 9 H 0.107 0.893 10 C -0.089 4.089 11 N -0.237 5.237 12 C -0.082 4.082 13 C 0.231 3.769 14 O -0.498 6.498 15 N -0.212 5.212 16 C -0.462 4.462 17 H 0.099 0.901 18 C -0.215 4.215 19 N -0.562 5.562 20 Si 0.818 3.182 21 H -0.197 1.197 22 H -0.196 1.196 23 H -0.196 1.196 24 C -0.102 4.102 25 C 0.045 3.955 26 H 0.117 0.883 27 O -0.375 6.375 28 C -0.047 4.047 29 O -0.082 6.082 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.256 0.744 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.128 0.872 37 H 0.086 0.914 38 H 0.229 0.771 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.063 0.937 42 H 0.253 0.747 43 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -21.969 -18.412 -8.614 29.930 hybrid contribution 1.425 0.361 -0.231 1.488 sum -20.544 -18.051 -8.845 28.742 Atomic orbital electron populations 1.20627 0.77586 1.06825 1.06510 1.27316 0.98141 0.77531 0.97656 1.70717 1.00486 1.31188 1.19500 1.21600 0.91954 0.93658 1.14730 1.16996 0.86480 0.82100 0.75408 1.90821 1.25579 1.75843 1.52250 1.45541 1.10160 1.04876 1.73357 1.21989 0.88817 0.89426 0.96461 0.89328 1.23248 1.01695 0.88130 0.95857 1.63171 1.20063 1.13296 1.27219 1.22044 0.89856 0.93913 1.02364 1.20601 0.82544 0.91209 0.82570 1.90465 1.47515 1.53283 1.58535 1.41926 1.11043 1.09119 1.59115 1.19639 0.97451 0.85478 1.43601 0.90094 1.26075 0.94751 1.04054 0.96580 1.69677 1.04442 1.35277 1.46854 0.84964 0.77476 0.76991 0.78753 1.19660 1.19608 1.19635 1.23577 0.98620 0.99786 0.88205 1.22995 0.98609 0.92557 0.81375 0.88348 1.86452 1.92504 1.39500 1.19040 1.25732 0.85647 0.95209 0.98142 1.84450 1.16539 1.38112 1.69118 0.86990 0.87009 0.86969 0.74439 0.89010 0.91171 0.87195 0.91425 0.77119 0.91338 0.90096 0.93707 0.74665 0.73051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.19 10.51 71.24 0.75 0.56 16 2 C 0.20 2.71 8.30 88.39 0.73 3.45 16 3 N -0.49 -9.25 11.06 -293.04 -3.24 -12.49 16 4 C -0.10 -2.12 6.99 40.41 0.28 -1.84 16 5 C 0.60 15.32 7.81 86.66 0.68 16.00 16 6 O -0.57 -17.43 16.61 -4.06 -0.07 -17.49 16 7 N -0.69 -15.83 5.13 -440.20 -2.26 -18.09 16 8 C 0.14 3.57 2.97 46.17 0.14 3.70 16 9 H 0.09 2.62 7.69 -2.39 -0.02 2.61 16 10 C 0.04 1.08 6.61 86.64 0.57 1.65 16 11 N -0.51 -17.07 4.86 -890.08 -4.33 -21.40 16 12 C 0.05 1.81 5.05 85.56 0.43 2.24 16 13 C 0.44 21.46 7.58 87.66 0.66 22.12 16 14 O -0.61 -33.64 14.61 -3.05 -0.04 -33.69 16 15 N -0.57 -30.01 5.29 -306.98 -1.62 -31.63 16 16 C -0.33 -19.01 9.68 84.04 0.81 -18.20 16 17 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 18 C -0.02 -0.81 5.50 84.93 0.47 -0.34 16 19 N -0.92 -50.47 13.05 21.67 0.28 -50.18 16 20 Si 0.99 43.28 29.55 68.60 2.03 45.30 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 24 C 0.03 0.84 5.48 86.77 0.48 1.31 16 25 C 0.11 2.50 4.03 31.98 0.13 2.63 16 26 H 0.10 2.01 8.00 -2.39 -0.02 1.99 16 27 O -0.57 -12.69 13.47 -148.98 -2.01 -14.69 16 28 C 0.03 0.43 11.95 67.32 0.80 1.23 16 29 O -0.20 -2.77 10.73 0.49 0.01 -2.77 16 30 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 33 H 0.42 8.32 8.25 -92.71 -0.76 7.56 16 34 H 0.09 2.39 8.03 -2.39 -0.02 2.38 16 35 H 0.07 1.91 7.55 -2.39 -0.02 1.89 16 36 H 0.11 3.59 8.03 -2.39 -0.02 3.58 16 37 H 0.07 2.27 7.85 -2.38 -0.02 2.25 16 38 H 0.40 19.76 7.90 -92.71 -0.73 19.03 16 39 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 40 H 0.08 2.87 7.38 -2.39 -0.02 2.85 16 41 H 0.04 1.49 7.62 -2.39 -0.02 1.47 16 42 H 0.40 5.63 9.12 -74.06 -0.68 4.96 16 43 H 0.25 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -77.93 373.51 -5.39 -83.31 By element: Atomic # 1 Polarization: 40.36 SS G_CDS: -1.07 Total: 39.29 kcal Atomic # 6 Polarization: 27.58 SS G_CDS: 6.94 Total: 34.52 kcal Atomic # 7 Polarization: -122.62 SS G_CDS: -11.17 Total: -133.79 kcal Atomic # 8 Polarization: -66.52 SS G_CDS: -2.11 Total: -68.64 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -77.93 -5.39 -83.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192445309.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.550 kcal (2) G-P(sol) polarization free energy of solvation -77.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds