Wall clock time and date at job start Tue Mar 31 2020 20:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86795 * 119.99794 * 2 1 4 4 H 1.48498 * 109.47166 * 269.99857 * 3 2 1 5 5 H 1.48504 * 109.47365 * 29.99968 * 3 2 1 6 6 H 1.48504 * 109.47184 * 150.00290 * 3 2 1 7 7 C 1.38950 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00085 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99946 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99944 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99994 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00309 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47480 * 180.02562 * 12 10 9 14 14 C 1.48562 * 110.99842 * 290.12664 * 13 12 10 15 15 C 1.54379 * 104.59486 * 200.96032 * 14 13 12 16 16 H 1.08997 * 110.32827 * 142.74551 * 15 14 13 17 17 O 1.42899 * 110.40886 * 264.91152 * 15 14 13 18 18 C 1.54266 * 105.05973 * 23.85004 * 15 14 13 19 19 H 1.09003 * 110.32265 * 241.10234 * 18 15 14 20 20 N 1.46503 * 110.32252 * 118.89953 * 18 15 14 21 21 C 1.34773 * 120.00218 * 154.99801 * 20 18 15 22 22 O 1.21284 * 119.99582 * 0.02562 * 21 20 18 23 23 C 1.50699 * 120.00164 * 179.97438 * 21 20 18 24 24 C 1.50701 * 109.47047 * 180.02562 * 23 21 20 25 25 C 1.41381 * 128.00648 * 90.00040 * 24 23 21 26 26 N 1.30174 * 106.39472 * 179.97438 * 25 24 23 27 27 O 1.20915 * 111.60433 * 359.97438 * 26 25 24 28 28 C 1.34037 * 111.56993 * 359.76511 * 27 26 25 29 29 C 1.48562 * 111.00142 * 174.70501 * 13 12 10 30 30 H 0.96999 * 120.00697 * 359.97438 * 1 2 3 31 31 H 0.96995 * 120.00270 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.47237 * 60.00115 * 12 10 9 33 33 H 1.09002 * 109.46702 * 300.00548 * 12 10 9 34 34 H 1.08998 * 110.41528 * 82.17831 * 14 13 12 35 35 H 1.08999 * 110.41058 * 319.73593 * 14 13 12 36 36 H 0.96699 * 114.00092 * 295.68385 * 17 15 14 37 37 H 0.97000 * 119.99570 * 335.00192 * 20 18 15 38 38 H 1.09003 * 109.46729 * 299.99791 * 23 21 20 39 39 H 1.08992 * 109.47410 * 60.00197 * 23 21 20 40 40 H 1.08006 * 126.80664 * 359.93989 * 25 24 23 41 41 H 1.07999 * 126.78199 * 180.28424 * 28 27 26 42 42 H 1.09000 * 110.41111 * 40.26361 * 29 13 12 43 43 H 1.08989 * 110.41482 * 277.81625 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0021 12 6 1.2439 -4.8630 -0.0022 13 7 2.1985 -5.9795 -0.0027 14 6 2.9072 -6.0734 -1.3050 15 6 3.4270 -7.5259 -1.3611 16 1 3.3583 -7.9137 -2.3775 17 8 4.7768 -7.5905 -0.8963 18 6 2.4979 -8.3208 -0.4205 19 1 3.0711 -8.7587 0.3966 20 7 1.7926 -9.3663 -1.1662 21 6 1.3443 -10.4645 -0.5264 22 8 1.5242 -10.5870 0.6667 23 6 0.6183 -11.5396 -1.2933 24 6 0.2252 -12.6493 -0.3525 25 6 -0.9710 -12.7781 0.3901 26 7 -0.8699 -13.8900 1.0595 27 8 0.1815 -14.4462 0.8426 28 6 0.9331 -13.7574 -0.0277 29 6 1.4948 -7.2816 0.1247 30 1 -0.4851 0.8400 0.0004 31 1 0.3535 -2.3907 -0.0005 32 1 0.6169 -4.9202 -0.8919 33 1 0.6176 -4.9212 0.8880 34 1 3.7395 -5.3703 -1.3365 35 1 2.2175 -5.8844 -2.1276 36 1 5.4066 -7.1081 -1.4492 37 1 1.6485 -9.2680 -2.1204 38 1 -0.2764 -11.1179 -1.7513 39 1 1.2719 -11.9360 -2.0702 40 1 -1.8035 -12.0901 0.4005 41 1 1.9110 -14.0308 -0.3956 42 1 0.5841 -7.2818 -0.4741 43 1 1.2638 -7.4883 1.1696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195561391.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:55 Heat of formation + Delta-G solvation = -37.309678 kcal Electronic energy + Delta-G solvation = -28529.655577 eV Core-core repulsion = 24193.013489 eV Total energy + Delta-G solvation = -4336.642087 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.24262 -40.44519 -39.10242 -37.85134 -35.70978 -35.00674 -34.59762 -33.83924 -32.48926 -31.30884 -30.58137 -29.11753 -28.00380 -26.40709 -24.30471 -23.34726 -22.47191 -21.56156 -20.93100 -20.75212 -19.23844 -18.28509 -18.00575 -17.92800 -17.50653 -17.05545 -16.33478 -16.05939 -15.77343 -15.42956 -15.30399 -14.75384 -14.57622 -14.19663 -14.07401 -13.87831 -13.72467 -13.50871 -13.17290 -12.95844 -12.78737 -12.66463 -12.14784 -11.98168 -11.90441 -11.58074 -11.52847 -11.27530 -10.98048 -10.87808 -10.69550 -10.41243 -10.31986 -10.24256 -10.03904 -9.72729 -9.52004 -9.45512 -8.56631 -8.08458 -7.97721 -6.44028 -3.84916 1.16927 1.87683 2.28974 2.74893 2.95907 3.15642 3.24707 3.30759 3.86660 3.91594 3.97719 4.07332 4.22346 4.28158 4.31858 4.45279 4.52967 4.70320 4.77232 4.85626 4.91023 5.11091 5.17121 5.21096 5.23141 5.29857 5.34694 5.54862 5.63978 5.68996 5.73941 5.81952 5.91533 6.12187 6.21393 6.23948 6.96527 7.07868 7.12317 7.52893 7.60882 7.88770 7.93197 8.03467 8.59105 9.15702 9.51645 10.03388 10.73721 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024406 B = 0.001928 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.964548 B =14518.770977 C =15317.740368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.444 3.556 11 O -0.577 6.577 12 C 0.034 3.966 13 N -0.475 5.475 14 C 0.007 3.993 15 C 0.098 3.902 16 H 0.064 0.936 17 O -0.552 6.552 18 C 0.147 3.853 19 H 0.114 0.886 20 N -0.723 5.723 21 C 0.514 3.486 22 O -0.524 6.524 23 C -0.062 4.062 24 C -0.188 4.188 25 C 0.005 3.995 26 N -0.365 5.365 27 O 0.097 5.903 28 C -0.043 4.043 29 C 0.024 3.976 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.046 0.954 36 H 0.383 0.617 37 H 0.400 0.600 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.189 0.811 41 H 0.215 0.785 42 H 0.047 0.953 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.869 -24.231 -9.012 25.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.229 3.771 11 O -0.461 6.461 12 C -0.098 4.098 13 N -0.199 5.199 14 C -0.122 4.122 15 C 0.038 3.962 16 H 0.082 0.918 17 O -0.357 6.357 18 C 0.042 3.958 19 H 0.132 0.868 20 N -0.376 5.376 21 C 0.299 3.701 22 O -0.398 6.398 23 C -0.103 4.103 24 C -0.192 4.192 25 C -0.174 4.174 26 N -0.069 5.069 27 O 0.033 5.967 28 C -0.125 4.125 29 C -0.106 4.106 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.127 0.873 35 H 0.064 0.936 36 H 0.231 0.769 37 H 0.234 0.766 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.206 0.794 41 H 0.232 0.768 42 H 0.065 0.935 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.756 -25.064 -6.326 25.861 hybrid contribution -0.452 1.985 -2.201 2.999 sum -1.208 -23.079 -8.528 24.634 Atomic orbital electron populations 1.69609 1.05938 1.28172 1.50629 1.25266 0.95645 0.99740 0.97351 0.85853 0.79281 0.80800 0.78332 1.20460 1.20914 1.19383 1.19692 0.93352 0.82170 1.47572 0.87903 1.41856 1.09170 1.04570 1.64534 1.19657 0.88392 0.84435 0.84570 1.90506 1.13601 1.86925 1.55024 1.22092 0.94185 0.91704 1.01776 1.65136 1.23513 1.00268 1.31015 1.23923 1.00800 0.96777 0.90670 1.22659 0.83464 0.94576 0.95501 0.91848 1.86517 1.16379 1.76574 1.56254 1.21549 0.91942 0.87325 0.94999 0.86824 1.46020 1.59098 1.20254 1.12241 1.20519 0.79028 0.82331 0.88195 1.90776 1.55842 1.78266 1.14960 1.19879 1.02069 0.91856 0.96487 1.20696 0.95893 0.98165 1.04465 1.24929 1.00112 0.96158 0.96221 1.73873 1.01957 1.10290 1.20776 1.84818 1.21215 1.42764 1.47906 1.25778 0.99210 0.93177 0.94309 1.23549 0.95250 0.89470 1.02297 0.91870 0.77522 0.93232 0.89078 0.87312 0.93585 0.76891 0.76554 0.87167 0.87272 0.79415 0.76822 0.93459 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.34 13.05 55.50 0.72 -23.61 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 7 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 9 N -0.56 -14.13 5.29 -10.96 -0.06 -14.19 16 10 C 0.44 10.34 7.59 -10.99 -0.08 10.26 16 11 O -0.58 -15.31 14.42 5.55 0.08 -15.23 16 12 C 0.03 0.60 5.30 -4.98 -0.03 0.57 16 13 N -0.48 -7.84 5.06 -231.42 -1.17 -9.01 16 14 C 0.01 0.10 5.54 -2.18 -0.01 0.08 16 15 C 0.10 1.09 4.18 -25.35 -0.11 0.99 16 16 H 0.06 0.50 7.67 -51.93 -0.40 0.10 16 17 O -0.55 -6.89 13.27 -35.23 -0.47 -7.36 16 18 C 0.15 1.71 3.22 -66.54 -0.21 1.50 16 19 H 0.11 1.67 7.40 -51.93 -0.38 1.28 16 20 N -0.72 -5.67 5.06 -52.46 -0.27 -5.94 16 21 C 0.51 4.62 7.82 -10.99 -0.09 4.54 16 22 O -0.52 -7.33 15.69 5.55 0.09 -7.24 16 23 C -0.06 -0.31 6.28 -29.04 -0.18 -0.49 16 24 C -0.19 -1.42 4.82 -104.42 -0.50 -1.92 16 25 C 0.01 0.05 12.16 -17.06 -0.21 -0.16 16 26 N -0.37 -4.02 12.07 30.35 0.37 -3.65 16 27 O 0.10 0.93 11.20 17.19 0.19 1.13 16 28 C -0.04 -0.30 12.26 29.74 0.36 0.07 16 29 C 0.02 0.31 6.20 -2.18 -0.01 0.30 16 30 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 32 H 0.05 0.77 7.88 -51.93 -0.41 0.36 16 33 H 0.09 1.49 8.13 -51.93 -0.42 1.07 16 34 H 0.11 1.88 6.85 -51.93 -0.36 1.52 16 35 H 0.05 0.60 7.82 -51.93 -0.41 0.19 16 36 H 0.38 3.31 9.12 45.56 0.42 3.72 16 37 H 0.40 1.78 8.36 -40.82 -0.34 1.44 16 38 H 0.11 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.11 0.23 8.14 -51.93 -0.42 -0.20 16 40 H 0.19 1.28 8.06 -52.48 -0.42 0.85 16 41 H 0.22 0.63 8.06 -52.49 -0.42 0.20 16 42 H 0.05 0.54 7.91 -51.93 -0.41 0.13 16 43 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 371.57 15.07 5.60 5.60 Total: -1.00 -37.51 371.57 -5.91 -43.42 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -4.66 Total: 12.41 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -1.31 Total: 7.83 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -0.40 Total: -56.41 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.11 Total: -28.71 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.51 -5.91 -43.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195561391.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.106 kcal (2) G-P(sol) polarization free energy of solvation -37.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds