Wall clock time and date at job start Tue Mar 31 2020 20:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86795 * 119.99794 * 2 1 4 4 H 1.48498 * 109.47166 * 269.99857 * 3 2 1 5 5 H 1.48504 * 109.47365 * 29.99968 * 3 2 1 6 6 H 1.48504 * 109.47184 * 150.00290 * 3 2 1 7 7 C 1.38950 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00085 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99946 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99944 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99994 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00309 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47480 * 180.02562 * 12 10 9 14 14 C 1.48562 * 110.99842 * 290.12664 * 13 12 10 15 15 C 1.54379 * 104.59486 * 200.96032 * 14 13 12 16 16 H 1.08997 * 110.32827 * 142.74551 * 15 14 13 17 17 O 1.42899 * 110.40886 * 264.91152 * 15 14 13 18 18 C 1.54266 * 105.05973 * 23.85004 * 15 14 13 19 19 H 1.09003 * 110.32265 * 241.10234 * 18 15 14 20 20 N 1.46503 * 110.32252 * 118.89953 * 18 15 14 21 21 C 1.34773 * 120.00218 * 154.99801 * 20 18 15 22 22 O 1.21284 * 119.99582 * 0.02562 * 21 20 18 23 23 C 1.50699 * 120.00164 * 179.97438 * 21 20 18 24 24 C 1.50701 * 109.47047 * 180.02562 * 23 21 20 25 25 C 1.41381 * 128.00648 * 90.00040 * 24 23 21 26 26 N 1.30174 * 106.39472 * 179.97438 * 25 24 23 27 27 O 1.20915 * 111.60433 * 359.97438 * 26 25 24 28 28 C 1.34037 * 111.56993 * 359.76511 * 27 26 25 29 29 C 1.48562 * 111.00142 * 174.70501 * 13 12 10 30 30 H 0.96999 * 120.00697 * 359.97438 * 1 2 3 31 31 H 0.96995 * 120.00270 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.47237 * 60.00115 * 12 10 9 33 33 H 1.09002 * 109.46702 * 300.00548 * 12 10 9 34 34 H 1.08998 * 110.41528 * 82.17831 * 14 13 12 35 35 H 1.08999 * 110.41058 * 319.73593 * 14 13 12 36 36 H 0.96699 * 114.00092 * 295.68385 * 17 15 14 37 37 H 0.97000 * 119.99570 * 335.00192 * 20 18 15 38 38 H 1.09003 * 109.46729 * 299.99791 * 23 21 20 39 39 H 1.08992 * 109.47410 * 60.00197 * 23 21 20 40 40 H 1.08006 * 126.80664 * 359.93989 * 25 24 23 41 41 H 1.07999 * 126.78199 * 180.28424 * 28 27 26 42 42 H 1.09000 * 110.41111 * 40.26361 * 29 13 12 43 43 H 1.08989 * 110.41482 * 277.81625 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0021 12 6 1.2439 -4.8630 -0.0022 13 7 2.1985 -5.9795 -0.0027 14 6 2.9072 -6.0734 -1.3050 15 6 3.4270 -7.5259 -1.3611 16 1 3.3583 -7.9137 -2.3775 17 8 4.7768 -7.5905 -0.8963 18 6 2.4979 -8.3208 -0.4205 19 1 3.0711 -8.7587 0.3966 20 7 1.7926 -9.3663 -1.1662 21 6 1.3443 -10.4645 -0.5264 22 8 1.5242 -10.5870 0.6667 23 6 0.6183 -11.5396 -1.2933 24 6 0.2252 -12.6493 -0.3525 25 6 -0.9710 -12.7781 0.3901 26 7 -0.8699 -13.8900 1.0595 27 8 0.1815 -14.4462 0.8426 28 6 0.9331 -13.7574 -0.0277 29 6 1.4948 -7.2816 0.1247 30 1 -0.4851 0.8400 0.0004 31 1 0.3535 -2.3907 -0.0005 32 1 0.6169 -4.9202 -0.8919 33 1 0.6176 -4.9212 0.8880 34 1 3.7395 -5.3703 -1.3365 35 1 2.2175 -5.8844 -2.1276 36 1 5.4066 -7.1081 -1.4492 37 1 1.6485 -9.2680 -2.1204 38 1 -0.2764 -11.1179 -1.7513 39 1 1.2719 -11.9360 -2.0702 40 1 -1.8035 -12.0901 0.4005 41 1 1.9110 -14.0308 -0.3956 42 1 0.5841 -7.2818 -0.4741 43 1 1.2638 -7.4883 1.1696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195561391.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:54 Heat of formation + Delta-G solvation = -71.690611 kcal Electronic energy + Delta-G solvation = -28531.146446 eV Core-core repulsion = 24193.013489 eV Total energy + Delta-G solvation = -4338.132956 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.86540 -41.34290 -40.32855 -39.34743 -36.79127 -35.98472 -35.57526 -35.34582 -33.29323 -33.11171 -31.61895 -29.91226 -28.98793 -27.84016 -25.99873 -23.99221 -23.16732 -22.71228 -21.84205 -21.42295 -20.99222 -19.89209 -18.88291 -18.65951 -18.34064 -17.89225 -17.70694 -17.28338 -16.68900 -16.51891 -16.29364 -16.21142 -15.72488 -15.61889 -15.36894 -15.01324 -14.63171 -14.29102 -14.19027 -14.15977 -13.89225 -13.52847 -13.35899 -13.28893 -13.13167 -12.95467 -12.89892 -12.44641 -12.41604 -12.13228 -12.12404 -11.81335 -11.48763 -11.37559 -11.10285 -10.91695 -10.37970 -10.30742 -10.19687 -10.01152 -9.39555 -8.46870 -5.95388 0.62263 1.26489 1.37399 1.41512 1.54096 1.64121 2.04442 2.07567 2.28831 2.46178 2.82999 3.18109 3.20874 3.34165 3.40087 3.58884 3.70680 3.82238 3.86855 4.01595 4.10474 4.20092 4.27926 4.28841 4.34260 4.45614 4.49154 4.61809 4.64382 4.72863 4.79369 4.84912 4.89511 5.03716 5.17133 5.35879 5.40853 5.79245 5.85982 6.04966 6.54859 6.60273 6.86005 7.12806 7.28387 7.34152 7.55973 8.11835 8.70522 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024406 B = 0.001928 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.964548 B =14518.770977 C =15317.740368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.993 3.007 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.331 4.331 8 H 0.079 0.921 9 N -0.574 5.574 10 C 0.442 3.558 11 O -0.614 6.614 12 C 0.047 3.953 13 N -0.509 5.509 14 C 0.005 3.995 15 C 0.109 3.891 16 H 0.110 0.890 17 O -0.575 6.575 18 C 0.155 3.845 19 H 0.079 0.921 20 N -0.705 5.705 21 C 0.513 3.487 22 O -0.581 6.581 23 C -0.050 4.050 24 C -0.200 4.200 25 C -0.007 4.007 26 N -0.405 5.405 27 O 0.079 5.921 28 C -0.039 4.039 29 C 0.030 3.970 30 H 0.277 0.723 31 H 0.396 0.604 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.397 0.603 37 H 0.422 0.578 38 H 0.140 0.860 39 H 0.149 0.851 40 H 0.202 0.798 41 H 0.252 0.748 42 H 0.072 0.928 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.360 -24.946 -11.469 27.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.816 3.184 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.460 4.460 8 H 0.097 0.903 9 N -0.212 5.212 10 C 0.229 3.771 11 O -0.500 6.500 12 C -0.084 4.084 13 N -0.233 5.233 14 C -0.123 4.123 15 C 0.049 3.951 16 H 0.128 0.872 17 O -0.383 6.383 18 C 0.048 3.952 19 H 0.097 0.903 20 N -0.359 5.359 21 C 0.301 3.699 22 O -0.459 6.459 23 C -0.090 4.090 24 C -0.204 4.204 25 C -0.186 4.186 26 N -0.112 5.112 27 O 0.018 5.982 28 C -0.120 4.120 29 C -0.099 4.099 30 H 0.087 0.913 31 H 0.229 0.771 32 H 0.097 0.903 33 H 0.121 0.879 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.248 0.752 37 H 0.261 0.739 38 H 0.158 0.842 39 H 0.167 0.833 40 H 0.219 0.781 41 H 0.268 0.732 42 H 0.090 0.910 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.259 -25.798 -8.843 27.300 hybrid contribution -0.252 2.175 -1.422 2.611 sum -1.511 -23.622 -10.265 25.801 Atomic orbital electron populations 1.69668 1.06797 1.29263 1.50443 1.26033 0.96556 1.02394 0.96384 0.84933 0.77820 0.76920 0.78698 1.19419 1.19691 1.19944 1.19642 0.92662 0.83949 1.49795 0.90321 1.41922 1.09285 1.04667 1.65318 1.20689 0.88286 0.85820 0.82286 1.90482 1.15624 1.87807 1.56081 1.21929 0.93870 0.88961 1.03657 1.65017 1.24237 1.01194 1.32888 1.23912 0.99906 0.98169 0.90290 1.22703 0.82547 0.92342 0.97479 0.87247 1.86481 1.17369 1.76868 1.57611 1.21179 0.91651 0.87605 0.94725 0.90282 1.45793 1.58081 1.18979 1.13064 1.21280 0.78148 0.82815 0.87682 1.90771 1.58071 1.79404 1.17702 1.19989 1.03484 0.89621 0.95885 1.21063 0.95261 0.99133 1.04967 1.25389 1.01343 0.95858 0.95967 1.73860 1.03109 1.11667 1.22542 1.84764 1.21324 1.43370 1.48786 1.26570 0.99911 0.92699 0.92846 1.23493 0.96361 0.88102 1.01967 0.91330 0.77053 0.90321 0.87925 0.90946 0.91690 0.75216 0.73947 0.84218 0.83330 0.78087 0.73224 0.90956 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.34 13.05 21.66 0.28 -49.06 16 2 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 3 Si 0.99 42.69 29.55 68.60 2.03 44.72 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.33 -18.66 9.68 84.04 0.81 -17.85 16 8 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 9 N -0.57 -29.22 5.29 -306.99 -1.62 -30.84 16 10 C 0.44 20.86 7.59 87.66 0.66 21.52 16 11 O -0.61 -33.64 14.42 -3.06 -0.04 -33.69 16 12 C 0.05 1.62 5.30 85.56 0.45 2.07 16 13 N -0.51 -16.41 5.06 -886.07 -4.49 -20.90 16 14 C 0.01 0.15 5.54 86.45 0.48 0.63 16 15 C 0.11 2.18 4.18 31.49 0.13 2.31 16 16 H 0.11 1.21 7.67 -2.39 -0.02 1.19 16 17 O -0.57 -13.82 13.27 -148.98 -1.98 -15.79 16 18 C 0.16 3.34 3.22 45.89 0.15 3.48 16 19 H 0.08 2.32 7.40 -2.39 -0.02 2.31 16 20 N -0.70 -8.60 5.06 -438.28 -2.22 -10.82 16 21 C 0.51 7.80 7.82 87.66 0.69 8.49 16 22 O -0.58 -15.82 15.69 -3.04 -0.05 -15.86 16 23 C -0.05 -0.28 6.28 29.10 0.18 -0.10 16 24 C -0.20 -2.56 4.82 -19.74 -0.10 -2.65 16 25 C -0.01 -0.12 12.16 85.71 1.04 0.92 16 26 N -0.41 -8.98 12.07 -59.27 -0.72 -9.70 16 27 O 0.08 1.50 11.20 71.67 0.80 2.30 16 28 C -0.04 -0.47 12.26 67.17 0.82 0.36 16 29 C 0.03 0.74 6.20 86.45 0.54 1.27 16 30 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 31 H 0.40 19.09 7.90 -92.71 -0.73 18.36 16 32 H 0.08 2.23 7.88 -2.39 -0.02 2.21 16 33 H 0.10 3.26 8.13 -2.39 -0.02 3.24 16 34 H 0.07 2.53 6.85 -2.39 -0.02 2.52 16 35 H 0.07 1.51 7.82 -2.39 -0.02 1.49 16 36 H 0.40 6.54 9.12 -74.06 -0.68 5.87 16 37 H 0.42 1.56 8.36 -92.71 -0.77 0.78 16 38 H 0.14 0.05 8.14 -2.39 -0.02 0.03 16 39 H 0.15 -0.26 8.14 -2.39 -0.02 -0.28 16 40 H 0.20 2.56 8.06 -2.91 -0.02 2.54 16 41 H 0.25 0.68 8.06 -2.91 -0.02 0.66 16 42 H 0.07 1.42 7.91 -2.39 -0.02 1.41 16 43 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -86.57 371.57 -2.75 -89.32 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: -1.09 Total: 30.14 kcal Atomic # 6 Polarization: 13.84 SS G_CDS: 6.33 Total: 20.18 kcal Atomic # 7 Polarization: -112.55 SS G_CDS: -8.76 Total: -121.31 kcal Atomic # 8 Polarization: -61.78 SS G_CDS: -1.27 Total: -63.04 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -86.57 -2.75 -89.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195561391.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.627 kcal (2) G-P(sol) polarization free energy of solvation -86.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds