Wall clock time and date at job start Tue Mar 31 2020 20:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86803 * 119.99859 * 2 1 4 4 H 1.48501 * 109.46658 * 274.98777 * 3 2 1 5 5 H 1.48497 * 109.47157 * 34.98497 * 3 2 1 6 6 H 1.48496 * 109.47080 * 154.98589 * 3 2 1 7 7 C 1.38810 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99760 * 187.04670 * 7 2 1 9 9 N 1.36942 * 119.99963 * 7.05515 * 7 2 1 10 10 C 1.47018 * 125.64790 * 354.77985 * 9 7 2 11 11 C 1.54324 * 107.26838 * 178.99536 * 10 9 7 12 12 H 1.08999 * 110.72083 * 96.17294 * 11 10 9 13 13 O 1.42900 * 110.72073 * 219.43955 * 11 10 9 14 14 C 1.55160 * 102.94523 * 337.80645 * 11 10 9 15 15 H 1.08997 * 110.99989 * 277.38901 * 14 11 10 16 16 N 1.46499 * 111.00507 * 153.57591 * 14 11 10 17 17 C 1.34774 * 119.99886 * 158.17713 * 16 14 11 18 18 O 1.21286 * 120.00050 * 0.02562 * 17 16 14 19 19 C 1.50703 * 119.99800 * 179.97438 * 17 16 14 20 20 C 1.53001 * 109.46713 * 180.02562 * 19 17 16 21 21 O 1.42906 * 109.47040 * 180.02562 * 20 19 17 22 22 C 1.35946 * 117.00124 * 179.97438 * 21 20 19 23 23 C 1.38702 * 120.02885 * 359.72909 * 22 21 20 24 24 C 1.38152 * 119.96812 * 179.74531 * 23 22 21 25 25 C 1.38456 * 120.02708 * 0.52626 * 24 23 22 26 26 F 1.35099 * 119.96526 * 179.72040 * 25 24 23 27 27 C 1.38447 * 120.06155 * 359.74639 * 25 24 23 28 28 C 1.38153 * 120.03266 * 359.97438 * 27 25 24 29 29 C 1.47468 * 125.62602 * 174.79842 * 9 7 2 30 30 H 0.97001 * 119.99763 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.88385 * 59.57934 * 10 9 7 32 32 H 1.08999 * 110.01159 * 298.48519 * 10 9 7 33 33 H 0.96692 * 114.00166 * 293.52475 * 13 11 10 34 34 H 0.96998 * 119.99825 * 338.18144 * 16 14 11 35 35 H 1.09005 * 109.46829 * 60.00973 * 19 17 16 36 36 H 1.08992 * 109.47621 * 300.00314 * 19 17 16 37 37 H 1.09004 * 109.47433 * 300.00035 * 20 19 17 38 38 H 1.09000 * 109.47551 * 60.00481 * 20 19 17 39 39 H 1.08003 * 120.01864 * 359.97438 * 23 22 21 40 40 H 1.08005 * 119.98765 * 180.25014 * 24 23 22 41 41 H 1.08006 * 119.98638 * 179.97438 * 27 25 24 42 42 H 1.07998 * 120.01402 * 180.02562 * 28 27 25 43 43 H 1.09007 * 110.34567 * 85.23727 * 29 9 7 44 44 H 1.08998 * 110.40891 * 322.89828 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5044 2.6200 0.8027 6 1 3.5965 1.4121 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0842 -1.2056 0.1153 9 7 1.3334 -2.3836 -0.1446 10 6 -0.1282 -2.5324 -0.2009 11 6 -0.4286 -4.0335 -0.3958 12 1 -0.6372 -4.5125 0.5608 13 8 -1.5175 -4.2176 -1.3028 14 6 0.8912 -4.5759 -1.0052 15 1 0.9253 -4.4019 -2.0807 16 7 1.0647 -5.9983 -0.7004 17 6 1.8714 -6.7583 -1.4673 18 8 2.4542 -6.2644 -2.4094 19 6 2.0504 -8.2213 -1.1534 20 6 3.0096 -8.8469 -2.1680 21 8 3.1789 -10.2344 -1.8708 22 6 4.0063 -10.9433 -2.6837 23 6 4.6372 -10.3170 -3.7484 24 6 5.4820 -11.0374 -4.5706 25 6 5.6904 -12.3864 -4.3387 26 9 6.5123 -13.0910 -5.1470 27 6 5.0568 -13.0141 -3.2798 28 6 4.2161 -12.2948 -2.4525 29 6 1.9502 -3.7173 -0.2699 30 1 -0.4850 0.8401 0.0004 31 1 -0.5268 -1.9625 -1.0402 32 1 -0.5748 -2.1828 0.7299 33 1 -2.3659 -3.8951 -0.9694 34 1 0.5988 -6.3932 0.0532 35 1 1.0852 -8.7251 -1.2070 36 1 2.4618 -8.3301 -0.1500 37 1 2.5985 -8.7382 -3.1717 38 1 3.9747 -8.3431 -2.1141 39 1 4.4711 -9.2658 -3.9324 40 1 5.9766 -10.5491 -5.3973 41 1 5.2199 -14.0665 -3.1002 42 1 3.7223 -12.7846 -1.6262 43 1 2.1576 -4.1331 0.7162 44 1 2.8660 -3.6587 -0.8581 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195800840.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:38 Heat of formation + Delta-G solvation = -113.402143 kcal Electronic energy + Delta-G solvation = -27968.134889 eV Core-core repulsion = 23608.273223 eV Total energy + Delta-G solvation = -4359.861666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.12439 -40.53768 -39.77038 -38.03751 -37.49217 -35.13438 -34.14840 -32.52803 -31.72259 -31.44824 -29.50635 -28.42730 -27.14875 -25.20692 -24.22115 -23.15508 -22.22817 -20.76554 -20.46403 -20.11877 -18.81559 -17.77896 -17.22793 -17.09234 -16.86111 -16.68668 -16.39969 -15.84121 -15.76137 -15.04297 -14.99287 -14.76546 -14.51818 -14.12060 -14.01115 -13.87583 -13.37356 -13.26132 -13.09762 -12.97829 -12.72522 -12.52107 -12.12614 -12.03756 -12.01742 -11.55198 -11.31318 -11.15380 -10.98352 -10.94812 -10.84721 -10.20479 -9.98047 -9.93138 -9.91211 -9.58085 -9.38411 -8.93192 -8.66286 -8.45989 -6.96110 -5.82055 -3.15477 0.76945 0.84722 2.53565 2.62950 3.19733 3.36344 3.41267 3.43341 3.45335 3.96296 4.27135 4.38930 4.39755 4.47825 4.56402 4.65555 4.73515 4.80780 4.90649 5.09410 5.12803 5.22349 5.36994 5.42643 5.44787 5.50271 5.52022 5.61053 5.74843 5.75744 5.76836 5.86482 6.00951 6.06290 6.32374 6.42646 6.54886 6.79318 6.97752 7.24975 7.43221 7.54844 7.69371 8.05364 8.12370 8.24612 9.10234 9.70558 10.33497 11.30111 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021204 B = 0.001806 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.196776 B =15497.062530 C =16386.480709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.006 4.006 3 Si 0.914 3.086 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.231 4.231 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.152 3.848 11 C 0.069 3.931 12 H 0.058 0.942 13 O -0.563 6.563 14 C 0.138 3.862 15 H 0.105 0.895 16 N -0.712 5.712 17 C 0.518 3.482 18 O -0.540 6.540 19 C -0.140 4.140 20 C 0.073 3.927 21 O -0.314 6.314 22 C 0.127 3.873 23 C -0.179 4.179 24 C -0.111 4.111 25 C 0.055 3.945 26 F -0.143 7.143 27 C -0.115 4.115 28 C -0.126 4.126 29 C 0.130 3.870 30 H 0.254 0.746 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.377 0.623 34 H 0.399 0.601 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.023 0.977 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.445 -24.678 -2.382 25.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.359 4.359 8 H 0.099 0.901 9 N -0.328 5.328 10 C 0.027 3.973 11 C 0.008 3.992 12 H 0.076 0.924 13 O -0.368 6.368 14 C 0.033 3.967 15 H 0.123 0.877 16 N -0.362 5.362 17 C 0.304 3.696 18 O -0.417 6.417 19 C -0.180 4.180 20 C -0.002 4.002 21 O -0.228 6.228 22 C 0.081 3.919 23 C -0.198 4.198 24 C -0.130 4.130 25 C 0.036 3.964 26 F -0.122 7.122 27 C -0.133 4.133 28 C -0.144 4.144 29 C 0.003 3.997 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.224 0.776 34 H 0.233 0.767 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.161 0.839 40 H 0.156 0.844 41 H 0.159 0.841 42 H 0.159 0.841 43 H 0.041 0.959 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.195 -24.415 -3.275 24.989 hybrid contribution -0.087 1.047 0.515 1.170 sum 4.108 -23.368 -2.759 23.887 Atomic orbital electron populations 1.69935 1.04984 1.25297 1.56642 1.24847 0.95775 0.97826 1.01801 0.86068 0.78681 0.83231 0.77613 1.21458 1.21715 1.20533 1.19084 0.91265 0.82217 1.43300 0.90102 1.44248 1.01171 1.01000 1.86338 1.21834 0.85504 0.88140 1.01845 1.23449 0.85916 0.99069 0.90720 0.92413 1.86461 1.19309 1.85139 1.45931 1.22292 0.94564 0.78075 1.01803 0.87749 1.45885 1.47549 1.10401 1.32354 1.20158 0.79155 0.87753 0.82567 1.90747 1.47086 1.74572 1.29303 1.21461 1.02053 0.92951 1.01499 1.22514 1.00374 0.78085 0.99267 1.85992 1.61701 1.23040 1.52039 1.18991 0.91046 0.91609 0.90231 1.21278 1.00427 1.01552 0.96533 1.20990 0.98999 0.92389 1.00592 1.17596 0.95672 0.90380 0.92799 1.91491 1.70245 1.78596 1.71823 1.20946 0.97260 1.00889 0.94243 1.20284 1.01171 0.91204 1.01769 1.21859 0.95020 0.86330 0.96522 0.93605 0.91940 0.93458 0.77593 0.76690 0.87683 0.87605 0.90734 0.90652 0.83935 0.84361 0.84100 0.84082 0.95901 0.93074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.36 10.36 55.49 0.57 -25.79 16 2 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 3 Si 0.91 21.86 29.56 -169.99 -5.02 16.84 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.23 -6.36 10.26 -15.06 -0.15 -6.51 16 8 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 9 N -0.60 -15.02 3.40 -170.04 -0.58 -15.60 16 10 C 0.15 3.51 5.16 -3.07 -0.02 3.50 16 11 C 0.07 1.20 3.97 -24.89 -0.10 1.10 16 12 H 0.06 0.87 8.00 -51.93 -0.42 0.46 16 13 O -0.56 -9.29 13.39 -35.23 -0.47 -9.76 16 14 C 0.14 2.46 3.09 -65.78 -0.20 2.26 16 15 H 0.10 2.18 7.63 -51.93 -0.40 1.78 16 16 N -0.71 -9.47 5.21 -51.73 -0.27 -9.74 16 17 C 0.52 6.89 7.83 -10.99 -0.09 6.80 16 18 O -0.54 -9.42 15.67 5.55 0.09 -9.33 16 19 C -0.14 -1.23 6.07 -27.88 -0.17 -1.40 16 20 C 0.07 0.70 4.03 37.16 0.15 0.85 16 21 O -0.31 -3.03 10.14 -19.57 -0.20 -3.22 16 22 C 0.13 1.19 6.69 -39.24 -0.26 0.93 16 23 C -0.18 -1.62 9.04 -39.44 -0.36 -1.98 16 24 C -0.11 -0.96 10.02 -39.53 -0.40 -1.36 16 25 C 0.05 0.50 7.30 -39.42 -0.29 0.21 16 26 F -0.14 -1.40 17.27 2.25 0.04 -1.37 16 27 C -0.11 -0.88 10.02 -39.54 -0.40 -1.27 16 28 C -0.13 -1.00 9.99 -39.44 -0.39 -1.39 16 29 C 0.13 2.68 6.93 -2.51 -0.02 2.67 16 30 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.06 1.64 7.21 -51.93 -0.37 1.26 16 32 H 0.05 1.17 7.61 -51.93 -0.40 0.78 16 33 H 0.38 4.66 9.12 45.56 0.42 5.07 16 34 H 0.40 4.00 8.54 -40.82 -0.35 3.65 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.74 7.61 -51.93 -0.39 0.34 16 38 H 0.08 0.75 7.63 -51.93 -0.40 0.36 16 39 H 0.14 1.20 6.30 -52.48 -0.33 0.87 16 40 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 41 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 42 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 44 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 374.71 15.07 5.65 5.65 Total: -1.00 -33.55 374.71 -8.12 -41.67 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.14 Total: 6.52 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: -2.78 Total: 4.13 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -0.27 Total: -51.12 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.58 Total: -22.32 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.55 -8.12 -41.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195800840.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.730 kcal (2) G-P(sol) polarization free energy of solvation -33.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds