Wall clock time and date at job start Tue Mar 31 2020 20:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86803 * 119.99859 * 2 1 4 4 H 1.48501 * 109.46658 * 274.98777 * 3 2 1 5 5 H 1.48497 * 109.47157 * 34.98497 * 3 2 1 6 6 H 1.48496 * 109.47080 * 154.98589 * 3 2 1 7 7 C 1.38810 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99760 * 187.04670 * 7 2 1 9 9 N 1.36942 * 119.99963 * 7.05515 * 7 2 1 10 10 C 1.47018 * 125.64790 * 354.77985 * 9 7 2 11 11 C 1.54324 * 107.26838 * 178.99536 * 10 9 7 12 12 H 1.08999 * 110.72083 * 96.17294 * 11 10 9 13 13 O 1.42900 * 110.72073 * 219.43955 * 11 10 9 14 14 C 1.55160 * 102.94523 * 337.80645 * 11 10 9 15 15 H 1.08997 * 110.99989 * 277.38901 * 14 11 10 16 16 N 1.46499 * 111.00507 * 153.57591 * 14 11 10 17 17 C 1.34774 * 119.99886 * 158.17713 * 16 14 11 18 18 O 1.21286 * 120.00050 * 0.02562 * 17 16 14 19 19 C 1.50703 * 119.99800 * 179.97438 * 17 16 14 20 20 C 1.53001 * 109.46713 * 180.02562 * 19 17 16 21 21 O 1.42906 * 109.47040 * 180.02562 * 20 19 17 22 22 C 1.35946 * 117.00124 * 179.97438 * 21 20 19 23 23 C 1.38702 * 120.02885 * 359.72909 * 22 21 20 24 24 C 1.38152 * 119.96812 * 179.74531 * 23 22 21 25 25 C 1.38456 * 120.02708 * 0.52626 * 24 23 22 26 26 F 1.35099 * 119.96526 * 179.72040 * 25 24 23 27 27 C 1.38447 * 120.06155 * 359.74639 * 25 24 23 28 28 C 1.38153 * 120.03266 * 359.97438 * 27 25 24 29 29 C 1.47468 * 125.62602 * 174.79842 * 9 7 2 30 30 H 0.97001 * 119.99763 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.88385 * 59.57934 * 10 9 7 32 32 H 1.08999 * 110.01159 * 298.48519 * 10 9 7 33 33 H 0.96692 * 114.00166 * 293.52475 * 13 11 10 34 34 H 0.96998 * 119.99825 * 338.18144 * 16 14 11 35 35 H 1.09005 * 109.46829 * 60.00973 * 19 17 16 36 36 H 1.08992 * 109.47621 * 300.00314 * 19 17 16 37 37 H 1.09004 * 109.47433 * 300.00035 * 20 19 17 38 38 H 1.09000 * 109.47551 * 60.00481 * 20 19 17 39 39 H 1.08003 * 120.01864 * 359.97438 * 23 22 21 40 40 H 1.08005 * 119.98765 * 180.25014 * 24 23 22 41 41 H 1.08006 * 119.98638 * 179.97438 * 27 25 24 42 42 H 1.07998 * 120.01402 * 180.02562 * 28 27 25 43 43 H 1.09007 * 110.34567 * 85.23727 * 29 9 7 44 44 H 1.08998 * 110.40891 * 322.89828 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5044 2.6200 0.8027 6 1 3.5965 1.4121 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0842 -1.2056 0.1153 9 7 1.3334 -2.3836 -0.1446 10 6 -0.1282 -2.5324 -0.2009 11 6 -0.4286 -4.0335 -0.3958 12 1 -0.6372 -4.5125 0.5608 13 8 -1.5175 -4.2176 -1.3028 14 6 0.8912 -4.5759 -1.0052 15 1 0.9253 -4.4019 -2.0807 16 7 1.0647 -5.9983 -0.7004 17 6 1.8714 -6.7583 -1.4673 18 8 2.4542 -6.2644 -2.4094 19 6 2.0504 -8.2213 -1.1534 20 6 3.0096 -8.8469 -2.1680 21 8 3.1789 -10.2344 -1.8708 22 6 4.0063 -10.9433 -2.6837 23 6 4.6372 -10.3170 -3.7484 24 6 5.4820 -11.0374 -4.5706 25 6 5.6904 -12.3864 -4.3387 26 9 6.5123 -13.0910 -5.1470 27 6 5.0568 -13.0141 -3.2798 28 6 4.2161 -12.2948 -2.4525 29 6 1.9502 -3.7173 -0.2699 30 1 -0.4850 0.8401 0.0004 31 1 -0.5268 -1.9625 -1.0402 32 1 -0.5748 -2.1828 0.7299 33 1 -2.3659 -3.8951 -0.9694 34 1 0.5988 -6.3932 0.0532 35 1 1.0852 -8.7251 -1.2070 36 1 2.4618 -8.3301 -0.1500 37 1 2.5985 -8.7382 -3.1717 38 1 3.9747 -8.3431 -2.1141 39 1 4.4711 -9.2658 -3.9324 40 1 5.9766 -10.5491 -5.3973 41 1 5.2199 -14.0665 -3.1002 42 1 3.7223 -12.7846 -1.6262 43 1 2.1576 -4.1331 0.7162 44 1 2.8660 -3.6587 -0.8581 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195800840.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:37 Heat of formation + Delta-G solvation = -138.504481 kcal Electronic energy + Delta-G solvation = -27969.223408 eV Core-core repulsion = 23608.273223 eV Total energy + Delta-G solvation = -4360.950185 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.83652 -41.34341 -40.85866 -39.44681 -38.23691 -36.67498 -35.58494 -33.78229 -33.06777 -32.16728 -30.39982 -29.95005 -28.75779 -26.61043 -25.50664 -23.86867 -22.99452 -22.38423 -21.89410 -21.34297 -19.55142 -19.06942 -18.53921 -18.27555 -17.66911 -17.55275 -17.45803 -17.26967 -16.56041 -16.50774 -16.01215 -15.78015 -15.68198 -15.43661 -15.15866 -14.61556 -14.58508 -14.47514 -14.35304 -13.93208 -13.90670 -13.72398 -13.67647 -13.17701 -13.15612 -12.79809 -12.76571 -12.69797 -12.67621 -12.09064 -11.90808 -11.79763 -11.69490 -11.53534 -11.18247 -10.83820 -10.76780 -10.20284 -10.17546 -9.14378 -8.97445 -7.91677 -5.27158 0.14586 0.17650 1.44340 1.47178 1.55181 1.58084 1.67706 2.39848 2.51167 2.55033 3.13060 3.29239 3.31241 3.54628 3.57644 3.72470 3.78773 3.85987 3.95942 4.01662 4.06757 4.10954 4.21535 4.29376 4.41472 4.45707 4.56226 4.59467 4.75301 4.80015 4.82992 4.90820 5.01568 5.12047 5.13532 5.22333 5.34394 5.43297 5.47217 5.65912 5.67933 6.12626 6.27827 6.52110 6.87109 7.03457 7.22275 7.68314 8.30600 9.18460 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021204 B = 0.001806 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.196776 B =15497.062530 C =16386.480709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.061 4.061 3 Si 0.978 3.022 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.268 1.268 7 C -0.248 4.248 8 H 0.081 0.919 9 N -0.623 5.623 10 C 0.159 3.841 11 C 0.092 3.908 12 H 0.098 0.902 13 O -0.569 6.569 14 C 0.153 3.847 15 H 0.070 0.930 16 N -0.698 5.698 17 C 0.516 3.484 18 O -0.586 6.586 19 C -0.124 4.124 20 C 0.074 3.926 21 O -0.313 6.313 22 C 0.112 3.888 23 C -0.189 4.189 24 C -0.118 4.118 25 C 0.039 3.961 26 F -0.150 7.150 27 C -0.110 4.110 28 C -0.124 4.124 29 C 0.130 3.870 30 H 0.249 0.751 31 H 0.021 0.979 32 H 0.024 0.976 33 H 0.396 0.604 34 H 0.420 0.580 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.142 0.858 40 H 0.147 0.853 41 H 0.165 0.835 42 H 0.163 0.837 43 H 0.045 0.955 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.325 -27.009 -1.098 27.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.255 4.255 3 Si 0.806 3.194 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.192 1.192 7 C -0.376 4.376 8 H 0.099 0.901 9 N -0.351 5.351 10 C 0.033 3.967 11 C 0.031 3.969 12 H 0.116 0.884 13 O -0.377 6.377 14 C 0.046 3.954 15 H 0.089 0.911 16 N -0.350 5.350 17 C 0.305 3.695 18 O -0.466 6.466 19 C -0.164 4.164 20 C -0.002 4.002 21 O -0.227 6.227 22 C 0.066 3.934 23 C -0.208 4.208 24 C -0.137 4.137 25 C 0.019 3.981 26 F -0.129 7.129 27 C -0.128 4.128 28 C -0.142 4.142 29 C 0.004 3.996 30 H 0.059 0.941 31 H 0.039 0.961 32 H 0.042 0.958 33 H 0.247 0.753 34 H 0.258 0.742 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.159 0.841 40 H 0.165 0.835 41 H 0.183 0.817 42 H 0.181 0.819 43 H 0.062 0.938 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 4.059 -26.803 -1.962 27.179 hybrid contribution -0.026 1.722 0.079 1.724 sum 4.033 -25.081 -1.883 25.473 Atomic orbital electron populations 1.70132 1.06149 1.25551 1.57560 1.25662 0.96719 1.00954 1.02120 0.85074 0.77975 0.79156 0.77219 1.21706 1.21673 1.19211 1.19427 0.91677 0.83672 1.42864 0.90071 1.44522 1.02311 1.01958 1.86259 1.21647 0.84374 0.91794 0.98903 1.23148 0.86172 0.95053 0.92497 0.88429 1.86428 1.20116 1.84896 1.46258 1.21710 0.93818 0.80471 0.99372 0.91148 1.45634 1.47885 1.08287 1.33214 1.20951 0.77778 0.89403 0.81419 1.90741 1.48761 1.75801 1.31343 1.21390 1.03465 0.89152 1.02358 1.22437 1.00163 0.78326 0.99272 1.85965 1.61864 1.22737 1.52095 1.19243 0.91389 0.92309 0.90450 1.21339 1.00852 1.01672 0.96924 1.21141 0.99051 0.92593 1.00921 1.17839 0.96169 0.90617 0.93429 1.91471 1.70558 1.78714 1.72152 1.21228 0.96285 1.02027 0.93276 1.20555 1.00849 0.90617 1.02171 1.21965 0.95037 0.85169 0.97470 0.94128 0.96124 0.95751 0.75333 0.74156 0.84903 0.84881 0.91572 0.91595 0.84062 0.83476 0.81712 0.81935 0.93770 0.94822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.62 10.36 21.65 0.22 -55.40 16 2 C -0.06 -3.45 5.48 84.86 0.46 -2.98 16 3 Si 0.98 45.60 29.56 68.60 2.03 47.63 16 4 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 5 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.25 -13.91 10.26 84.03 0.86 -13.05 16 8 H 0.08 4.41 7.84 -2.91 -0.02 4.38 16 9 N -0.62 -31.74 3.40 -691.88 -2.35 -34.09 16 10 C 0.16 7.45 5.16 86.73 0.45 7.90 16 11 C 0.09 3.08 3.97 31.78 0.13 3.20 16 12 H 0.10 2.58 8.00 -2.39 -0.02 2.56 16 13 O -0.57 -17.85 13.39 -148.98 -1.99 -19.84 16 14 C 0.15 5.35 3.09 46.38 0.14 5.49 16 15 H 0.07 2.99 7.63 -2.39 -0.02 2.97 16 16 N -0.70 -16.83 5.21 -435.96 -2.27 -19.10 16 17 C 0.52 12.77 7.83 87.66 0.69 13.46 16 18 O -0.59 -20.44 15.67 -3.05 -0.05 -20.48 16 19 C -0.12 -1.80 6.07 29.85 0.18 -1.62 16 20 C 0.07 1.30 4.03 71.98 0.29 1.59 16 21 O -0.31 -5.36 10.14 -92.95 -0.94 -6.30 16 22 C 0.11 1.93 6.69 22.49 0.15 2.08 16 23 C -0.19 -3.35 9.04 22.36 0.20 -3.14 16 24 C -0.12 -2.01 10.02 22.30 0.22 -1.79 16 25 C 0.04 0.66 7.30 22.37 0.16 0.83 16 26 F -0.15 -2.85 17.27 44.97 0.78 -2.07 16 27 C -0.11 -1.46 10.02 22.30 0.22 -1.24 16 28 C -0.12 -1.68 9.99 22.36 0.22 -1.46 16 29 C 0.13 5.35 6.93 86.85 0.60 5.95 16 30 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 31 H 0.02 1.13 7.21 -2.39 -0.02 1.11 16 32 H 0.02 1.24 7.61 -2.39 -0.02 1.22 16 33 H 0.40 9.05 9.12 -74.06 -0.68 8.37 16 34 H 0.42 6.66 8.54 -92.71 -0.79 5.87 16 35 H 0.13 1.28 8.14 -2.38 -0.02 1.27 16 36 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.07 1.27 7.61 -2.39 -0.02 1.25 16 38 H 0.07 1.28 7.63 -2.39 -0.02 1.26 16 39 H 0.14 2.44 6.30 -2.91 -0.02 2.42 16 40 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 41 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 42 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 43 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 44 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -75.77 374.71 0.00 -75.77 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -0.42 Total: 18.68 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: 4.99 Total: 15.21 kcal Atomic # 7 Polarization: -104.19 SS G_CDS: -4.40 Total: -108.59 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -2.98 Total: -46.62 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.78 Total: -2.07 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -75.77 0.00 -75.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195800840.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.735 kcal (2) G-P(sol) polarization free energy of solvation -75.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds