Wall clock time and date at job start Tue Mar 31 2020 21:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30010 * 127.33699 * 2 1 4 4 O 1.20663 * 112.30399 * 180.30704 * 3 2 1 5 5 C 1.33497 * 113.15298 * 359.71184 * 4 3 2 6 6 C 1.37356 * 106.34124 * 0.02562 * 5 4 3 7 7 C 1.47402 * 128.56392 * 179.97438 * 6 5 4 8 8 O 1.21608 * 119.99809 * 180.02562 * 7 6 5 9 9 N 1.34771 * 119.99945 * 0.02562 * 7 6 5 10 10 C 1.46505 * 120.00015 * 180.02562 * 9 7 6 11 11 H 1.08996 * 110.27037 * 35.63744 * 10 9 7 12 12 C 1.53998 * 110.30886 * 273.55101 * 10 9 7 13 13 N 1.47900 * 107.05774 * 242.21216 * 12 10 9 14 14 C 1.46904 * 110.99881 * 214.15680 * 13 12 10 15 15 C 1.50697 * 109.46892 * 169.99493 * 14 13 12 16 16 O 1.21291 * 120.00763 * 359.72740 * 15 14 13 17 17 N 1.34784 * 119.99774 * 179.97438 * 15 14 13 18 18 C 1.37092 * 119.99968 * 179.72830 * 17 15 14 19 19 H 1.08005 * 120.00127 * 359.97438 * 18 17 15 20 20 C 1.38955 * 120.00107 * 179.97438 * 18 17 15 21 21 N 1.31413 * 119.99828 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00407 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46940 * 60.00199 * 22 20 18 24 24 H 1.48496 * 109.47341 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47121 * 300.00728 * 22 20 18 26 26 C 1.48540 * 105.81665 * 334.66708 * 13 12 10 27 27 C 1.54591 * 110.39221 * 157.78459 * 10 9 7 28 28 H 1.09006 * 110.72744 * 22.56381 * 27 10 9 29 29 O 1.42899 * 110.72755 * 259.45253 * 27 10 9 30 30 H 1.09002 * 109.46950 * 270.14251 * 1 2 3 31 31 H 1.09004 * 109.47030 * 30.13975 * 1 2 3 32 32 H 1.08999 * 109.47469 * 150.14237 * 1 2 3 33 33 H 1.07996 * 126.82839 * 180.02562 * 5 4 3 34 34 H 0.97005 * 120.00143 * 0.02562 * 9 7 6 35 35 H 1.08991 * 109.91631 * 122.85430 * 12 10 9 36 36 H 1.08998 * 109.91424 * 1.55935 * 12 10 9 37 37 H 1.09001 * 109.46900 * 50.00153 * 14 13 12 38 38 H 1.08993 * 109.47169 * 289.99874 * 14 13 12 39 39 H 0.97005 * 119.99846 * 359.72750 * 17 15 14 40 40 H 0.96990 * 120.00373 * 180.02562 * 21 20 18 41 41 H 1.09005 * 110.66101 * 157.64335 * 26 13 12 42 42 H 1.08997 * 110.66844 * 280.76758 * 26 13 12 43 43 H 0.96692 * 114.00312 * 179.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 -0.0060 5 6 3.6494 -0.6008 -0.0049 6 6 2.3992 -1.1696 0.0024 7 6 2.0400 -2.5992 0.0059 8 8 0.8705 -2.9323 0.0120 9 7 3.0078 -3.5371 0.0024 10 6 2.6509 -4.9580 0.0053 11 1 1.7502 -5.1224 -0.5862 12 6 2.4405 -5.4533 1.4482 13 7 3.4545 -6.5002 1.6998 14 6 2.9244 -7.5442 2.5869 15 6 3.8834 -8.7060 2.6244 16 8 4.9054 -8.6703 1.9722 17 7 3.6031 -9.7871 3.3790 18 6 4.4729 -10.8464 3.4088 19 1 5.3825 -10.8148 2.8273 20 6 4.1842 -11.9607 4.1871 21 7 3.0772 -11.9994 4.8942 22 14 5.3689 -13.4044 4.2272 23 1 6.6890 -12.9475 4.7307 24 1 4.8339 -14.4589 5.1255 25 1 5.5253 -13.9546 2.8568 26 6 3.7992 -7.0585 0.3672 27 6 3.8182 -5.8078 -0.5471 28 1 4.7636 -5.2738 -0.4505 29 8 3.5805 -6.1691 -1.9091 30 1 -0.3633 0.0026 1.0277 31 1 -0.3633 0.8888 -0.5160 32 1 -0.3634 -0.8912 -0.5116 33 1 4.5966 -1.1196 -0.0090 34 1 3.9408 -3.2714 -0.0021 35 1 1.4399 -5.8722 1.5548 36 1 2.5771 -4.6284 2.1475 37 1 1.9581 -7.8827 2.2127 38 1 2.8036 -7.1401 3.5919 39 1 2.7860 -9.8156 3.9009 40 1 2.8758 -12.7770 5.4378 41 1 4.7804 -7.5326 0.3909 42 1 3.0374 -7.7648 0.0372 43 1 4.2839 -6.7028 -2.3030 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195806461.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:25 Heat of formation + Delta-G solvation = -39.458134 kcal Electronic energy + Delta-G solvation = -28825.054436 eV Core-core repulsion = 24488.319185 eV Total energy + Delta-G solvation = -4336.735251 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.29110 -40.37928 -39.06808 -37.84767 -35.84924 -34.86611 -34.67012 -33.91395 -32.52421 -31.37695 -30.20777 -29.04687 -28.08155 -26.64271 -24.97570 -24.11345 -21.82297 -21.61329 -21.21849 -20.50136 -19.35585 -18.63307 -18.10176 -17.95875 -17.65038 -16.92732 -16.42553 -16.05565 -15.44190 -15.29132 -14.87911 -14.77003 -14.61334 -14.15836 -13.92874 -13.82033 -13.60750 -13.48278 -13.19246 -13.12957 -12.81170 -12.62113 -12.51642 -12.17300 -11.78771 -11.67792 -11.60201 -11.38466 -11.04343 -10.71382 -10.48748 -10.47576 -10.28603 -10.28241 -10.16622 -10.05846 -9.55082 -9.44091 -8.50685 -8.12405 -8.00407 -6.48351 -3.89774 0.65307 1.42679 2.45540 2.84319 2.87074 3.14826 3.21787 3.25306 3.65496 3.72719 3.80876 3.89770 4.07967 4.29133 4.38958 4.44065 4.59092 4.79744 4.90311 4.94235 5.06264 5.18421 5.21272 5.24296 5.28862 5.32764 5.38596 5.60434 5.72313 5.72528 5.81897 5.83494 6.03242 6.16143 6.18950 6.42044 6.95729 7.08280 7.12354 7.48280 7.49797 7.79436 7.84731 7.97705 8.53016 9.10024 9.45517 9.96177 10.68991 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025344 B = 0.002025 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.551914 B =13820.743043 C =14105.601497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.071 3.929 3 N -0.360 5.360 4 O 0.098 5.902 5 C -0.003 4.003 6 C -0.253 4.253 7 C 0.597 3.403 8 O -0.524 6.524 9 N -0.710 5.710 10 C 0.145 3.855 11 H 0.107 0.893 12 C 0.026 3.974 13 N -0.490 5.490 14 C 0.035 3.965 15 C 0.441 3.559 16 O -0.585 6.585 17 N -0.558 5.558 18 C -0.302 4.302 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.899 5.899 22 Si 0.932 3.068 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.010 3.990 27 C 0.091 3.909 28 H 0.075 0.925 29 O -0.562 6.562 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.227 0.773 34 H 0.400 0.600 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.393 0.607 40 H 0.273 0.727 41 H 0.126 0.874 42 H 0.050 0.950 43 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.152 20.067 -9.760 22.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.091 4.091 3 N -0.068 5.068 4 O 0.039 5.961 5 C -0.086 4.086 6 C -0.261 4.261 7 C 0.383 3.617 8 O -0.401 6.401 9 N -0.361 5.361 10 C 0.040 3.960 11 H 0.125 0.875 12 C -0.104 4.104 13 N -0.216 5.216 14 C -0.096 4.096 15 C 0.227 3.773 16 O -0.470 6.470 17 N -0.194 5.194 18 C -0.431 4.431 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.540 5.540 22 Si 0.759 3.241 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.199 1.199 26 C -0.118 4.118 27 C 0.031 3.969 28 H 0.093 0.907 29 O -0.368 6.368 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.243 0.757 34 H 0.235 0.765 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.070 0.930 38 H 0.111 0.889 39 H 0.226 0.774 40 H 0.083 0.917 41 H 0.144 0.856 42 H 0.069 0.931 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -1.674 21.543 -9.692 23.682 hybrid contribution 0.272 -2.233 0.139 2.254 sum -1.402 19.310 -9.553 21.589 Atomic orbital electron populations 1.20294 0.84756 1.04472 1.04075 1.24899 0.99055 0.86209 0.98963 1.73700 0.89214 1.23544 1.20349 1.84586 1.21614 1.22965 1.66972 1.26456 1.00303 0.84174 0.97654 1.22346 0.92939 0.95558 1.15226 1.16807 0.85538 0.83006 0.76310 1.90811 1.18122 1.81834 1.49340 1.45820 1.09202 1.05865 1.75226 1.21753 0.99255 0.78574 0.96419 0.87492 1.23368 0.95219 0.96612 0.95160 1.64601 1.35535 1.10540 1.10888 1.22136 0.96480 0.92337 0.98678 1.19647 0.88534 0.84260 0.84902 1.90409 1.28384 1.81392 1.46818 1.41850 1.22190 1.14624 1.40748 1.19644 1.03396 0.93702 1.26372 0.87887 1.25293 0.97205 0.99243 0.96144 1.69599 1.24129 1.31296 1.28978 0.85899 0.79937 0.80006 0.78271 1.19839 1.20941 1.19883 1.24142 1.05390 0.94977 0.87265 1.23006 0.96552 0.95411 0.81939 0.90672 1.86457 1.50200 1.74908 1.25200 0.89622 0.90383 0.88513 0.75698 0.76522 0.92458 0.89645 0.92963 0.88923 0.77368 0.91694 0.85602 0.93145 0.76669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.14 36.01 0.37 -0.31 16 2 C 0.07 0.73 7.58 -79.77 -0.60 0.12 16 3 N -0.36 -3.75 12.01 34.78 0.42 -3.33 16 4 O 0.10 0.82 11.06 18.64 0.21 1.03 16 5 C 0.00 -0.02 11.85 30.41 0.36 0.34 16 6 C -0.25 -2.35 6.47 -102.89 -0.67 -3.02 16 7 C 0.60 6.60 7.81 -12.53 -0.10 6.50 16 8 O -0.52 -7.53 15.39 5.27 0.08 -7.45 16 9 N -0.71 -6.62 5.02 -53.57 -0.27 -6.89 16 10 C 0.15 1.70 3.06 -66.57 -0.20 1.50 16 11 H 0.11 1.46 7.57 -51.93 -0.39 1.06 16 12 C 0.03 0.33 6.49 -2.75 -0.02 0.32 16 13 N -0.49 -7.59 5.26 -231.89 -1.22 -8.82 16 14 C 0.04 0.61 5.52 -4.98 -0.03 0.58 16 15 C 0.44 9.87 7.50 -10.98 -0.08 9.79 16 16 O -0.58 -14.51 13.08 5.55 0.07 -14.44 16 17 N -0.56 -13.68 5.29 -10.96 -0.06 -13.74 16 18 C -0.30 -8.13 9.68 -14.93 -0.14 -8.27 16 19 H 0.10 2.89 7.16 -52.48 -0.38 2.51 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -23.97 13.05 55.50 0.72 -23.25 16 22 Si 0.93 20.50 29.55 -169.99 -5.02 15.48 16 23 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 26 C 0.01 0.16 5.03 -1.90 -0.01 0.15 16 27 C 0.09 1.04 4.14 -24.87 -0.10 0.94 16 28 H 0.08 0.73 7.75 -51.93 -0.40 0.33 16 29 O -0.56 -6.29 13.41 -35.23 -0.47 -6.76 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.10 0.90 7.11 -51.93 -0.37 0.53 16 33 H 0.23 0.28 7.68 -52.49 -0.40 -0.13 16 34 H 0.40 2.50 7.54 -40.82 -0.31 2.19 16 35 H 0.06 0.75 7.57 -51.93 -0.39 0.36 16 36 H 0.09 1.07 7.92 -51.93 -0.41 0.65 16 37 H 0.05 0.84 7.81 -51.93 -0.41 0.43 16 38 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 40 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.13 2.23 5.97 -51.93 -0.31 1.92 16 42 H 0.05 0.82 8.02 -51.93 -0.42 0.41 16 43 H 0.39 2.86 9.12 45.56 0.42 3.27 16 LS Contribution 367.06 15.07 5.53 5.53 Total: -1.00 -34.00 367.06 -5.83 -39.84 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -4.50 Total: 13.64 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: -1.33 Total: 9.15 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: -0.41 Total: -56.02 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.11 Total: -27.62 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.00 -5.83 -39.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195806461.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.377 kcal (2) G-P(sol) polarization free energy of solvation -34.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds