Wall clock time and date at job start Tue Mar 31 2020 21:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30010 * 127.33699 * 2 1 4 4 O 1.20663 * 112.30399 * 180.30704 * 3 2 1 5 5 C 1.33497 * 113.15298 * 359.71184 * 4 3 2 6 6 C 1.37356 * 106.34124 * 0.02562 * 5 4 3 7 7 C 1.47402 * 128.56392 * 179.97438 * 6 5 4 8 8 O 1.21608 * 119.99809 * 180.02562 * 7 6 5 9 9 N 1.34771 * 119.99945 * 0.02562 * 7 6 5 10 10 C 1.46505 * 120.00015 * 180.02562 * 9 7 6 11 11 H 1.08996 * 110.27037 * 35.63744 * 10 9 7 12 12 C 1.53998 * 110.30886 * 273.55101 * 10 9 7 13 13 N 1.47900 * 107.05774 * 242.21216 * 12 10 9 14 14 C 1.46904 * 110.99881 * 214.15680 * 13 12 10 15 15 C 1.50697 * 109.46892 * 169.99493 * 14 13 12 16 16 O 1.21291 * 120.00763 * 359.72740 * 15 14 13 17 17 N 1.34784 * 119.99774 * 179.97438 * 15 14 13 18 18 C 1.37092 * 119.99968 * 179.72830 * 17 15 14 19 19 H 1.08005 * 120.00127 * 359.97438 * 18 17 15 20 20 C 1.38955 * 120.00107 * 179.97438 * 18 17 15 21 21 N 1.31413 * 119.99828 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00407 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46940 * 60.00199 * 22 20 18 24 24 H 1.48496 * 109.47341 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47121 * 300.00728 * 22 20 18 26 26 C 1.48540 * 105.81665 * 334.66708 * 13 12 10 27 27 C 1.54591 * 110.39221 * 157.78459 * 10 9 7 28 28 H 1.09006 * 110.72744 * 22.56381 * 27 10 9 29 29 O 1.42899 * 110.72755 * 259.45253 * 27 10 9 30 30 H 1.09002 * 109.46950 * 270.14251 * 1 2 3 31 31 H 1.09004 * 109.47030 * 30.13975 * 1 2 3 32 32 H 1.08999 * 109.47469 * 150.14237 * 1 2 3 33 33 H 1.07996 * 126.82839 * 180.02562 * 5 4 3 34 34 H 0.97005 * 120.00143 * 0.02562 * 9 7 6 35 35 H 1.08991 * 109.91631 * 122.85430 * 12 10 9 36 36 H 1.08998 * 109.91424 * 1.55935 * 12 10 9 37 37 H 1.09001 * 109.46900 * 50.00153 * 14 13 12 38 38 H 1.08993 * 109.47169 * 289.99874 * 14 13 12 39 39 H 0.97005 * 119.99846 * 359.72750 * 17 15 14 40 40 H 0.96990 * 120.00373 * 180.02562 * 21 20 18 41 41 H 1.09005 * 110.66101 * 157.64335 * 26 13 12 42 42 H 1.08997 * 110.66844 * 280.76758 * 26 13 12 43 43 H 0.96692 * 114.00312 * 179.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 -0.0060 5 6 3.6494 -0.6008 -0.0049 6 6 2.3992 -1.1696 0.0024 7 6 2.0400 -2.5992 0.0059 8 8 0.8705 -2.9323 0.0120 9 7 3.0078 -3.5371 0.0024 10 6 2.6509 -4.9580 0.0053 11 1 1.7502 -5.1224 -0.5862 12 6 2.4405 -5.4533 1.4482 13 7 3.4545 -6.5002 1.6998 14 6 2.9244 -7.5442 2.5869 15 6 3.8834 -8.7060 2.6244 16 8 4.9054 -8.6703 1.9722 17 7 3.6031 -9.7871 3.3790 18 6 4.4729 -10.8464 3.4088 19 1 5.3825 -10.8148 2.8273 20 6 4.1842 -11.9607 4.1871 21 7 3.0772 -11.9994 4.8942 22 14 5.3689 -13.4044 4.2272 23 1 6.6890 -12.9475 4.7307 24 1 4.8339 -14.4589 5.1255 25 1 5.5253 -13.9546 2.8568 26 6 3.7992 -7.0585 0.3672 27 6 3.8182 -5.8078 -0.5471 28 1 4.7636 -5.2738 -0.4505 29 8 3.5805 -6.1691 -1.9091 30 1 -0.3633 0.0026 1.0277 31 1 -0.3633 0.8888 -0.5160 32 1 -0.3634 -0.8912 -0.5116 33 1 4.5966 -1.1196 -0.0090 34 1 3.9408 -3.2714 -0.0021 35 1 1.4399 -5.8722 1.5548 36 1 2.5771 -4.6284 2.1475 37 1 1.9581 -7.8827 2.2127 38 1 2.8036 -7.1401 3.5919 39 1 2.7860 -9.8156 3.9009 40 1 2.8758 -12.7770 5.4378 41 1 4.7804 -7.5326 0.3909 42 1 3.0374 -7.7648 0.0372 43 1 4.2839 -6.7028 -2.3030 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195806461.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:24 Heat of formation + Delta-G solvation = -69.985043 kcal Electronic energy + Delta-G solvation = -28826.378183 eV Core-core repulsion = 24488.319185 eV Total energy + Delta-G solvation = -4338.058997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.96760 -41.39752 -40.37586 -39.25340 -36.91538 -36.02398 -35.52927 -35.45429 -33.35458 -33.20843 -31.35259 -29.77725 -29.13963 -28.08347 -26.25683 -25.35660 -22.89725 -22.34121 -22.11901 -21.43607 -21.07082 -19.88789 -19.34638 -18.78463 -18.62931 -17.80338 -17.65185 -17.26706 -16.68256 -16.41424 -16.29572 -16.02914 -15.86302 -15.45798 -15.30557 -14.87930 -14.55937 -14.36573 -14.25710 -14.10518 -13.80703 -13.79602 -13.52636 -13.45237 -13.39592 -13.02040 -12.87739 -12.59564 -12.42719 -12.35041 -12.13290 -11.77844 -11.45974 -11.39279 -11.01100 -10.98082 -10.81306 -10.37013 -10.13363 -10.01257 -9.44886 -8.46536 -5.95343 0.06048 0.71866 1.40067 1.42643 1.53330 1.74638 2.02482 2.07819 2.23832 2.28037 2.64670 2.98889 3.10229 3.20116 3.28489 3.31069 3.57020 3.75452 3.82164 3.97299 4.01368 4.21370 4.27939 4.33599 4.42409 4.42814 4.50645 4.59696 4.60250 4.65119 4.73668 4.78097 4.84144 5.11727 5.15180 5.31807 5.41202 5.71919 5.81208 6.03370 6.38405 6.58873 6.77867 7.05669 7.11822 7.19942 7.54400 8.08613 8.70576 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025344 B = 0.002025 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.551914 B =13820.743043 C =14105.601497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.054 3.946 3 N -0.382 5.382 4 O 0.097 5.903 5 C 0.036 3.964 6 C -0.283 4.283 7 C 0.600 3.400 8 O -0.565 6.565 9 N -0.694 5.694 10 C 0.153 3.847 11 H 0.088 0.912 12 C 0.030 3.970 13 N -0.496 5.496 14 C 0.044 3.956 15 C 0.442 3.558 16 O -0.610 6.610 17 N -0.572 5.572 18 C -0.331 4.331 19 H 0.084 0.916 20 C -0.015 4.015 21 N -0.921 5.921 22 Si 0.994 3.006 23 H -0.270 1.270 24 H -0.274 1.274 25 H -0.271 1.271 26 C 0.011 3.989 27 C 0.108 3.892 28 H 0.103 0.897 29 O -0.572 6.572 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.278 0.722 34 H 0.418 0.582 35 H 0.054 0.946 36 H 0.095 0.905 37 H 0.066 0.934 38 H 0.111 0.889 39 H 0.395 0.605 40 H 0.277 0.723 41 H 0.099 0.901 42 H 0.032 0.968 43 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.146 21.078 -10.040 23.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 N -0.091 5.091 4 O 0.039 5.961 5 C -0.046 4.046 6 C -0.291 4.291 7 C 0.388 3.612 8 O -0.445 6.445 9 N -0.347 5.347 10 C 0.047 3.953 11 H 0.106 0.894 12 C -0.099 4.099 13 N -0.221 5.221 14 C -0.087 4.087 15 C 0.229 3.771 16 O -0.496 6.496 17 N -0.209 5.209 18 C -0.460 4.460 19 H 0.102 0.898 20 C -0.215 4.215 21 N -0.562 5.562 22 Si 0.817 3.183 23 H -0.195 1.195 24 H -0.198 1.198 25 H -0.196 1.196 26 C -0.117 4.117 27 C 0.048 3.952 28 H 0.120 0.880 29 O -0.380 6.380 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.294 0.706 34 H 0.256 0.744 35 H 0.073 0.927 36 H 0.113 0.887 37 H 0.084 0.916 38 H 0.129 0.871 39 H 0.229 0.771 40 H 0.087 0.913 41 H 0.117 0.883 42 H 0.050 0.950 43 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -0.344 22.582 -9.985 24.694 hybrid contribution -0.090 -2.486 0.168 2.494 sum -0.434 20.096 -9.818 22.370 Atomic orbital electron populations 1.20283 0.84492 1.04376 1.04315 1.25204 0.99768 0.86781 0.99096 1.73708 0.89885 1.24035 1.21453 1.84561 1.20835 1.24083 1.66600 1.27325 1.00985 0.82964 0.93305 1.22192 0.94216 0.94400 1.18247 1.16997 0.85075 0.83759 0.75376 1.90795 1.19843 1.82507 1.51305 1.45583 1.10014 1.04538 1.74561 1.21480 0.98710 0.79911 0.95248 0.89368 1.23372 0.94331 0.95897 0.96268 1.64593 1.36450 1.10259 1.10828 1.22043 0.95347 0.90922 1.00415 1.20547 0.88742 0.84719 0.83087 1.90406 1.29814 1.82057 1.47327 1.41935 1.22195 1.15032 1.41757 1.19643 1.03669 0.95349 1.27363 0.89834 1.26076 0.98744 1.01246 0.95423 1.69671 1.25199 1.32083 1.29280 0.84971 0.77920 0.76975 0.78391 1.19549 1.19842 1.19599 1.23997 1.03120 0.96426 0.88200 1.22832 0.97526 0.93452 0.81369 0.87958 1.86435 1.51514 1.75280 1.24731 0.89226 0.89299 0.89700 0.70624 0.74359 0.92746 0.88661 0.91620 0.87070 0.77123 0.91343 0.88282 0.95002 0.74759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.32 10.14 71.24 0.72 -0.60 16 2 C 0.05 1.05 7.58 45.16 0.34 1.39 16 3 N -0.38 -7.44 12.01 -44.77 -0.54 -7.98 16 4 O 0.10 1.38 11.06 76.95 0.85 2.23 16 5 C 0.04 0.31 11.85 67.61 0.80 1.11 16 6 C -0.28 -4.69 6.47 -18.74 -0.12 -4.81 16 7 C 0.60 12.31 7.81 86.66 0.68 12.99 16 8 O -0.56 -16.08 15.39 -4.05 -0.06 -16.14 16 9 N -0.69 -11.10 5.02 -441.66 -2.22 -13.32 16 10 C 0.15 3.31 3.06 45.87 0.14 3.45 16 11 H 0.09 2.33 7.57 -2.39 -0.02 2.32 16 12 C 0.03 0.73 6.49 86.45 0.56 1.29 16 13 N -0.50 -14.75 5.26 -887.57 -4.67 -19.43 16 14 C 0.04 1.49 5.52 85.56 0.47 1.96 16 15 C 0.44 19.97 7.50 87.65 0.66 20.62 16 16 O -0.61 -30.76 13.08 -3.06 -0.04 -30.80 16 17 N -0.57 -28.52 5.29 -306.97 -1.62 -30.14 16 18 C -0.33 -18.17 9.68 84.04 0.81 -17.36 16 19 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 20 C -0.02 -0.79 5.50 84.93 0.47 -0.33 16 21 N -0.92 -49.18 13.05 21.66 0.28 -48.89 16 22 Si 0.99 41.90 29.55 68.60 2.03 43.93 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 24 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 25 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 26 C 0.01 0.33 5.03 86.65 0.44 0.76 16 27 C 0.11 2.26 4.14 31.80 0.13 2.40 16 28 H 0.10 1.62 7.75 -2.38 -0.02 1.60 16 29 O -0.57 -11.71 13.41 -148.98 -2.00 -13.71 16 30 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.08 1.65 7.11 -2.39 -0.02 1.63 16 33 H 0.28 -0.94 7.68 -2.91 -0.02 -0.97 16 34 H 0.42 3.48 7.54 -92.70 -0.70 2.79 16 35 H 0.05 1.37 7.57 -2.39 -0.02 1.35 16 36 H 0.10 2.15 7.92 -2.39 -0.02 2.13 16 37 H 0.07 2.06 7.81 -2.39 -0.02 2.04 16 38 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 39 H 0.40 18.96 7.90 -92.70 -0.73 18.23 16 40 H 0.28 13.93 8.31 -92.72 -0.77 13.16 16 41 H 0.10 3.52 5.97 -2.38 -0.01 3.51 16 42 H 0.03 1.05 8.02 -2.39 -0.02 1.03 16 43 H 0.40 5.20 9.12 -74.06 -0.68 4.53 16 Total: -1.00 -75.69 367.06 -2.89 -78.58 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: -1.00 Total: 32.79 kcal Atomic # 6 Polarization: 16.78 SS G_CDS: 6.10 Total: 22.88 kcal Atomic # 7 Polarization: -111.00 SS G_CDS: -8.77 Total: -119.76 kcal Atomic # 8 Polarization: -57.17 SS G_CDS: -1.25 Total: -58.42 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -75.69 -2.89 -78.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195806461.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.596 kcal (2) G-P(sol) polarization free energy of solvation -75.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds