Wall clock time and date at job start Tue Mar 31 2020 20:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99862 * 2 1 4 4 H 1.48506 * 109.47190 * 269.99899 * 3 2 1 5 5 H 1.48500 * 109.47472 * 30.00191 * 3 2 1 6 6 H 1.48507 * 109.46699 * 150.00067 * 3 2 1 7 7 C 1.38810 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00069 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99650 * 0.02562 * 7 2 1 10 10 C 1.47425 * 125.65179 * 0.02562 * 9 7 2 11 11 C 1.54908 * 104.92961 * 204.15650 * 10 9 7 12 12 H 1.09008 * 111.00494 * 81.01141 * 11 10 9 13 13 O 1.42900 * 111.00699 * 204.82077 * 11 10 9 14 14 C 1.55154 * 101.58289 * 322.93718 * 11 10 9 15 15 H 1.08997 * 110.72022 * 277.13434 * 14 11 10 16 16 N 1.46497 * 110.72021 * 153.86481 * 14 11 10 17 17 C 1.34781 * 119.99953 * 155.00094 * 16 14 11 18 18 O 1.21281 * 120.00226 * 359.97438 * 17 16 14 19 19 C 1.50698 * 119.99963 * 180.02562 * 17 16 14 20 20 C 1.52996 * 109.47270 * 179.97438 * 19 17 16 21 21 N 1.46503 * 109.47570 * 179.97438 * 20 19 17 22 22 C 1.37895 * 120.06237 * 269.72773 * 21 20 19 23 23 C 1.32992 * 121.64876 * 179.69806 * 22 21 20 24 24 N 1.37891 * 121.65726 * 0.57749 * 23 22 21 25 25 H 0.97004 * 120.06403 * 179.68764 * 24 23 22 26 26 C 1.35064 * 119.87385 * 359.71722 * 24 23 22 27 27 O 1.21582 * 120.76894 * 179.97438 * 26 24 23 28 28 C 1.35059 * 120.06149 * 89.99525 * 21 20 19 29 29 O 1.21588 * 120.76468 * 0.03133 * 28 21 20 30 30 C 1.47290 * 125.79079 * 180.02562 * 9 7 2 31 31 H 0.97001 * 119.99611 * 0.02562 * 1 2 3 32 32 H 1.09002 * 110.36696 * 85.26297 * 10 9 7 33 33 H 1.08995 * 110.36608 * 323.05133 * 10 9 7 34 34 H 0.96696 * 113.99718 * 298.55179 * 13 11 10 35 35 H 0.96996 * 120.00123 * 334.99768 * 16 14 11 36 36 H 1.09005 * 109.47068 * 299.99881 * 19 17 16 37 37 H 1.09005 * 109.47143 * 59.99839 * 19 17 16 38 38 H 1.09005 * 109.47029 * 299.99968 * 20 19 17 39 39 H 1.09005 * 109.47117 * 59.99886 * 20 19 17 40 40 H 1.07994 * 119.16911 * 359.97438 * 22 21 20 41 41 H 1.08007 * 119.16790 * 180.27269 * 23 22 21 42 42 H 1.09004 * 109.85762 * 59.49821 * 30 9 7 43 43 H 1.08995 * 110.00297 * 298.42768 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0016 10 6 -0.1416 -2.5331 -0.0028 11 6 -0.4048 -3.9317 0.6089 12 1 -0.3558 -3.8977 1.6973 13 8 -1.6610 -4.4539 0.1716 14 6 0.7740 -4.7541 0.0247 15 1 0.5415 -5.0993 -0.9827 16 7 1.1013 -5.8836 0.8984 17 6 1.7020 -6.9774 0.3893 18 8 1.9711 -7.0270 -0.7922 19 6 2.0382 -8.1395 1.2880 20 6 2.7079 -9.2427 0.4663 21 7 3.0353 -10.3721 1.3400 22 6 4.2604 -10.4251 1.9708 23 6 4.5882 -11.4323 2.7750 24 7 3.7246 -12.4811 3.0103 25 1 3.9894 -13.2062 3.5978 26 6 2.5095 -12.4973 2.4207 27 8 1.7354 -13.4143 2.6164 28 6 2.1399 -11.3662 1.5250 29 8 1.0571 -11.3386 0.9725 30 6 1.9294 -3.7314 -0.0017 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5266 -2.4860 -1.0215 33 1 -0.5999 -1.7581 0.6114 34 1 -2.4220 -3.9168 0.4312 35 1 0.8858 -5.8441 1.8433 36 1 2.7177 -7.8071 2.0728 37 1 1.1242 -8.5266 1.7387 38 1 2.0280 -9.5749 -0.3183 39 1 3.6218 -8.8559 0.0153 40 1 4.9696 -9.6265 1.8111 41 1 5.5572 -11.4310 3.2521 42 1 2.5552 -3.8562 0.8821 43 1 2.5277 -3.8711 -0.9020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196953715.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:04 Heat of formation + Delta-G solvation = -90.386058 kcal Electronic energy + Delta-G solvation = -28784.607127 eV Core-core repulsion = 24445.663476 eV Total energy + Delta-G solvation = -4338.943652 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.00318 -39.90096 -38.94844 -38.10963 -37.84957 -35.48746 -35.09533 -34.11502 -32.27741 -31.59173 -29.99396 -28.51719 -27.28526 -26.34152 -24.52013 -23.92418 -23.18779 -20.84795 -20.41738 -20.01970 -19.41209 -19.07628 -17.95419 -17.33975 -17.07160 -16.84323 -16.59259 -16.06323 -15.79175 -15.56521 -15.24330 -14.93895 -14.50096 -14.34318 -14.04045 -13.90408 -13.70857 -13.31260 -13.27642 -13.12632 -12.91538 -12.45398 -12.35029 -11.95174 -11.90947 -11.52447 -11.49683 -11.32625 -11.06555 -10.89676 -10.87858 -10.26200 -10.23354 -10.00061 -9.89583 -9.73992 -9.34578 -8.85304 -8.77196 -8.16824 -6.98141 -5.77340 -3.20151 0.82647 1.20554 1.88627 2.40830 2.67438 2.91745 3.27399 3.34258 3.39282 3.40914 3.61378 4.34552 4.37742 4.48163 4.57426 4.58430 4.61215 4.84075 5.04313 5.13640 5.24994 5.31575 5.36842 5.51776 5.59099 5.60629 5.65352 5.82068 6.04058 6.07509 6.12390 6.16059 6.39956 6.58806 6.70118 6.84909 6.91711 7.26354 7.44308 7.46075 7.58649 7.67449 8.06703 8.19867 8.29160 9.08195 9.68689 10.31210 11.26851 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023617 B = 0.002074 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.312724 B =13499.412541 C =14252.370051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.011 4.011 3 Si 0.918 3.082 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.223 4.223 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.128 3.872 11 C 0.067 3.933 12 H 0.061 0.939 13 O -0.566 6.566 14 C 0.140 3.860 15 H 0.103 0.897 16 N -0.712 5.712 17 C 0.519 3.481 18 O -0.540 6.540 19 C -0.157 4.157 20 C 0.118 3.882 21 N -0.517 5.517 22 C 0.023 3.977 23 C 0.007 3.993 24 N -0.626 5.626 25 H 0.418 0.582 26 C 0.498 3.502 27 O -0.485 6.485 28 C 0.491 3.509 29 O -0.473 6.473 30 C 0.130 3.870 31 H 0.254 0.746 32 H 0.026 0.974 33 H 0.113 0.887 34 H 0.378 0.622 35 H 0.399 0.601 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.175 0.825 41 H 0.175 0.825 42 H 0.030 0.970 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.764 -20.410 9.568 24.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.206 4.206 3 Si 0.749 3.251 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.351 4.351 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.002 3.998 11 C 0.006 3.994 12 H 0.079 0.921 13 O -0.371 6.371 14 C 0.035 3.965 15 H 0.121 0.879 16 N -0.362 5.362 17 C 0.304 3.696 18 O -0.418 6.418 19 C -0.198 4.198 20 C -0.004 4.004 21 N -0.243 5.243 22 C -0.097 4.097 23 C -0.114 4.114 24 N -0.274 5.274 25 H 0.257 0.743 26 C 0.281 3.719 27 O -0.355 6.355 28 C 0.275 3.725 29 O -0.342 6.342 30 C 0.003 3.997 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.131 0.869 34 H 0.225 0.775 35 H 0.233 0.767 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.192 0.808 41 H 0.192 0.808 42 H 0.048 0.952 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 9.037 -21.086 8.084 24.324 hybrid contribution 0.304 1.142 1.015 1.558 sum 9.342 -19.944 9.099 23.829 Atomic orbital electron populations 1.69731 1.04964 1.25039 1.57526 1.24814 0.95796 0.97879 1.02153 0.86014 0.78473 0.82956 0.77687 1.21487 1.21587 1.20622 1.19091 0.90597 0.82078 1.43338 0.90179 1.44345 1.01464 0.99741 1.87255 1.22582 0.85654 0.92017 0.99575 1.23641 0.82708 0.96076 0.96967 0.92081 1.86413 1.16005 1.53363 1.81324 1.22041 0.94170 0.85059 0.95202 0.87928 1.45958 1.60925 1.16775 1.12547 1.20216 0.77548 0.83221 0.88578 1.90733 1.53258 1.81296 1.16487 1.21976 1.03589 0.94696 0.99582 1.21623 1.03188 0.83747 0.91809 1.45690 1.13972 1.21321 1.43269 1.21182 0.88808 1.01223 0.98512 1.21026 0.97309 0.89381 1.03686 1.43554 1.14684 1.23784 1.45398 0.74325 1.20381 0.82088 0.87598 0.81865 1.90934 1.49631 1.34739 1.60171 1.20336 0.85436 0.83053 0.83661 1.90932 1.21025 1.76105 1.46144 1.21665 0.93682 0.85368 0.98973 0.93540 0.95644 0.86907 0.77463 0.76680 0.88150 0.88317 0.87652 0.87719 0.80832 0.80788 0.95198 0.94834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.91 10.09 55.49 0.56 -25.35 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 3 Si 0.92 21.40 29.55 -169.99 -5.02 16.37 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.22 -6.02 10.28 -15.06 -0.15 -6.18 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.60 -14.91 3.40 -169.86 -0.58 -15.48 16 10 C 0.13 2.96 5.62 -2.53 -0.01 2.95 16 11 C 0.07 1.22 4.06 -24.58 -0.10 1.12 16 12 H 0.06 1.03 8.01 -51.92 -0.42 0.62 16 13 O -0.57 -9.70 13.47 -35.23 -0.47 -10.18 16 14 C 0.14 2.55 3.05 -66.10 -0.20 2.35 16 15 H 0.10 2.11 7.55 -51.93 -0.39 1.72 16 16 N -0.71 -9.98 5.10 -52.03 -0.27 -10.24 16 17 C 0.52 7.06 7.83 -10.98 -0.09 6.97 16 18 O -0.54 -9.41 15.63 5.56 0.09 -9.33 16 19 C -0.16 -1.42 6.02 -27.89 -0.17 -1.58 16 20 C 0.12 1.05 4.70 -4.04 -0.02 1.03 16 21 N -0.52 -4.00 2.65 -116.81 -0.31 -4.31 16 22 C 0.02 0.09 10.25 -16.64 -0.17 -0.09 16 23 C 0.01 0.02 11.10 -16.64 -0.18 -0.17 16 24 N -0.63 -3.08 5.38 -12.59 -0.07 -3.15 16 25 H 0.42 1.07 8.93 -40.82 -0.36 0.70 16 26 C 0.50 5.01 8.03 -11.69 -0.09 4.92 16 27 O -0.48 -6.76 17.85 -10.30 -0.18 -6.94 16 28 C 0.49 5.51 7.73 -11.69 -0.09 5.42 16 29 O -0.47 -7.27 16.67 -10.31 -0.17 -7.44 16 30 C 0.13 2.70 7.01 -2.92 -0.02 2.68 16 31 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.11 2.87 5.86 -51.93 -0.30 2.57 16 34 H 0.38 5.00 9.11 45.56 0.42 5.41 16 35 H 0.40 4.48 8.56 -40.82 -0.35 4.13 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.11 1.22 7.42 -51.93 -0.39 0.83 16 39 H 0.10 0.77 8.00 -51.93 -0.42 0.36 16 40 H 0.17 0.14 8.06 -52.49 -0.42 -0.29 16 41 H 0.18 -0.26 8.06 -52.48 -0.42 -0.68 16 42 H 0.03 0.59 8.03 -51.93 -0.42 0.17 16 43 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 368.59 15.07 5.55 5.55 Total: -1.00 -38.14 368.59 -6.98 -45.13 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -4.71 Total: 6.35 kcal Atomic # 6 Polarization: 20.41 SS G_CDS: -1.40 Total: 19.02 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -0.66 Total: -58.54 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -0.74 Total: -33.88 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -38.14 -6.98 -45.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196953715.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.260 kcal (2) G-P(sol) polarization free energy of solvation -38.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds