Wall clock time and date at job start Tue Mar 31 2020 20:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99862 * 2 1 4 4 H 1.48506 * 109.47190 * 269.99899 * 3 2 1 5 5 H 1.48500 * 109.47472 * 30.00191 * 3 2 1 6 6 H 1.48507 * 109.46699 * 150.00067 * 3 2 1 7 7 C 1.38810 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00069 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99650 * 0.02562 * 7 2 1 10 10 C 1.47425 * 125.65179 * 0.02562 * 9 7 2 11 11 C 1.54908 * 104.92961 * 204.15650 * 10 9 7 12 12 H 1.09008 * 111.00494 * 81.01141 * 11 10 9 13 13 O 1.42900 * 111.00699 * 204.82077 * 11 10 9 14 14 C 1.55154 * 101.58289 * 322.93718 * 11 10 9 15 15 H 1.08997 * 110.72022 * 277.13434 * 14 11 10 16 16 N 1.46497 * 110.72021 * 153.86481 * 14 11 10 17 17 C 1.34781 * 119.99953 * 155.00094 * 16 14 11 18 18 O 1.21281 * 120.00226 * 359.97438 * 17 16 14 19 19 C 1.50698 * 119.99963 * 180.02562 * 17 16 14 20 20 C 1.52996 * 109.47270 * 179.97438 * 19 17 16 21 21 N 1.46503 * 109.47570 * 179.97438 * 20 19 17 22 22 C 1.37895 * 120.06237 * 269.72773 * 21 20 19 23 23 C 1.32992 * 121.64876 * 179.69806 * 22 21 20 24 24 N 1.37891 * 121.65726 * 0.57749 * 23 22 21 25 25 H 0.97004 * 120.06403 * 179.68764 * 24 23 22 26 26 C 1.35064 * 119.87385 * 359.71722 * 24 23 22 27 27 O 1.21582 * 120.76894 * 179.97438 * 26 24 23 28 28 C 1.35059 * 120.06149 * 89.99525 * 21 20 19 29 29 O 1.21588 * 120.76468 * 0.03133 * 28 21 20 30 30 C 1.47290 * 125.79079 * 180.02562 * 9 7 2 31 31 H 0.97001 * 119.99611 * 0.02562 * 1 2 3 32 32 H 1.09002 * 110.36696 * 85.26297 * 10 9 7 33 33 H 1.08995 * 110.36608 * 323.05133 * 10 9 7 34 34 H 0.96696 * 113.99718 * 298.55179 * 13 11 10 35 35 H 0.96996 * 120.00123 * 334.99768 * 16 14 11 36 36 H 1.09005 * 109.47068 * 299.99881 * 19 17 16 37 37 H 1.09005 * 109.47143 * 59.99839 * 19 17 16 38 38 H 1.09005 * 109.47029 * 299.99968 * 20 19 17 39 39 H 1.09005 * 109.47117 * 59.99886 * 20 19 17 40 40 H 1.07994 * 119.16911 * 359.97438 * 22 21 20 41 41 H 1.08007 * 119.16790 * 180.27269 * 23 22 21 42 42 H 1.09004 * 109.85762 * 59.49821 * 30 9 7 43 43 H 1.08995 * 110.00297 * 298.42768 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0016 10 6 -0.1416 -2.5331 -0.0028 11 6 -0.4048 -3.9317 0.6089 12 1 -0.3558 -3.8977 1.6973 13 8 -1.6610 -4.4539 0.1716 14 6 0.7740 -4.7541 0.0247 15 1 0.5415 -5.0993 -0.9827 16 7 1.1013 -5.8836 0.8984 17 6 1.7020 -6.9774 0.3893 18 8 1.9711 -7.0270 -0.7922 19 6 2.0382 -8.1395 1.2880 20 6 2.7079 -9.2427 0.4663 21 7 3.0353 -10.3721 1.3400 22 6 4.2604 -10.4251 1.9708 23 6 4.5882 -11.4323 2.7750 24 7 3.7246 -12.4811 3.0103 25 1 3.9894 -13.2062 3.5978 26 6 2.5095 -12.4973 2.4207 27 8 1.7354 -13.4143 2.6164 28 6 2.1399 -11.3662 1.5250 29 8 1.0571 -11.3386 0.9725 30 6 1.9294 -3.7314 -0.0017 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5266 -2.4860 -1.0215 33 1 -0.5999 -1.7581 0.6114 34 1 -2.4220 -3.9168 0.4312 35 1 0.8858 -5.8441 1.8433 36 1 2.7177 -7.8071 2.0728 37 1 1.1242 -8.5266 1.7387 38 1 2.0280 -9.5749 -0.3183 39 1 3.6218 -8.8559 0.0153 40 1 4.9696 -9.6265 1.8111 41 1 5.5572 -11.4310 3.2521 42 1 2.5552 -3.8562 0.8821 43 1 2.5277 -3.8711 -0.9020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196953715.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:03 Heat of formation + Delta-G solvation = -123.633378 kcal Electronic energy + Delta-G solvation = -28786.048839 eV Core-core repulsion = 24445.663476 eV Total energy + Delta-G solvation = -4340.385364 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.67352 -41.10455 -39.81966 -39.32034 -38.76278 -36.68698 -36.21042 -35.57123 -33.70694 -32.75932 -30.58556 -30.14349 -28.82987 -27.38212 -26.22532 -24.48218 -24.05050 -22.49604 -21.83635 -21.36221 -20.03714 -19.59858 -19.12015 -18.74398 -18.27526 -17.93397 -17.45853 -17.27682 -16.97237 -16.54958 -16.54362 -15.95337 -15.63692 -15.58492 -15.19289 -14.88433 -14.81478 -14.54134 -14.42411 -14.05226 -13.92011 -13.88082 -13.64511 -13.19908 -13.13076 -13.02288 -12.82761 -12.72607 -12.70355 -12.23244 -12.04918 -11.92096 -11.57973 -11.42164 -11.21141 -11.04203 -10.82802 -10.76140 -10.17395 -8.97151 -8.65112 -7.81432 -5.27727 0.05342 0.78292 1.19311 1.48543 1.50505 1.58422 1.59175 1.82914 2.13687 2.33707 2.48358 3.07357 3.12914 3.30616 3.60736 3.64801 3.79091 3.87086 3.93641 4.07163 4.19841 4.23088 4.33326 4.43591 4.45554 4.57563 4.59423 4.80955 4.85569 4.88089 4.97908 5.09843 5.37048 5.44557 5.46001 5.53143 5.67522 5.72796 6.16638 6.21001 6.31226 6.50516 6.81949 6.83239 7.04521 7.20928 7.69386 8.31891 9.20458 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023617 B = 0.002074 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.312724 B =13499.412541 C =14252.370051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.984 3.016 4 H -0.291 1.291 5 H -0.291 1.291 6 H -0.266 1.266 7 C -0.240 4.240 8 H 0.085 0.915 9 N -0.620 5.620 10 C 0.132 3.868 11 C 0.088 3.912 12 H 0.087 0.913 13 O -0.571 6.571 14 C 0.154 3.846 15 H 0.075 0.925 16 N -0.702 5.702 17 C 0.518 3.482 18 O -0.582 6.582 19 C -0.141 4.141 20 C 0.119 3.881 21 N -0.499 5.499 22 C 0.002 3.998 23 C 0.026 3.974 24 N -0.600 5.600 25 H 0.434 0.566 26 C 0.491 3.509 27 O -0.540 6.540 28 C 0.475 3.525 29 O -0.537 6.537 30 C 0.132 3.868 31 H 0.250 0.750 32 H -0.011 1.011 33 H 0.091 0.909 34 H 0.396 0.604 35 H 0.417 0.583 36 H 0.144 0.856 37 H 0.098 0.902 38 H 0.070 0.930 39 H 0.126 0.874 40 H 0.215 0.785 41 H 0.230 0.770 42 H 0.049 0.951 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.982 -20.756 12.113 27.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.257 4.257 3 Si 0.811 3.189 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.190 1.190 7 C -0.368 4.368 8 H 0.103 0.897 9 N -0.348 5.348 10 C 0.006 3.994 11 C 0.028 3.972 12 H 0.105 0.895 13 O -0.379 6.379 14 C 0.047 3.953 15 H 0.093 0.907 16 N -0.354 5.354 17 C 0.305 3.695 18 O -0.461 6.461 19 C -0.181 4.181 20 C -0.003 4.003 21 N -0.223 5.223 22 C -0.116 4.116 23 C -0.093 4.093 24 N -0.247 5.247 25 H 0.275 0.725 26 C 0.274 3.726 27 O -0.415 6.415 28 C 0.261 3.739 29 O -0.411 6.411 30 C 0.006 3.994 31 H 0.059 0.941 32 H 0.007 0.993 33 H 0.108 0.892 34 H 0.246 0.754 35 H 0.254 0.746 36 H 0.162 0.838 37 H 0.116 0.884 38 H 0.088 0.912 39 H 0.144 0.856 40 H 0.232 0.768 41 H 0.246 0.754 42 H 0.067 0.933 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 12.348 -21.446 10.703 26.963 hybrid contribution -0.549 1.258 0.207 1.388 sum 11.799 -20.189 10.911 25.804 Atomic orbital electron populations 1.69962 1.06208 1.25334 1.58310 1.25656 0.96712 1.01048 1.02314 0.85003 0.77781 0.78755 0.77312 1.21787 1.21756 1.19029 1.19460 0.91155 0.83233 1.43001 0.89728 1.44613 1.02263 1.00757 1.87146 1.22384 0.84983 0.94650 0.97423 1.23317 0.83321 0.92796 0.97786 0.89486 1.86389 1.16257 1.53581 1.81627 1.21542 0.93202 0.85714 0.94821 0.90730 1.45771 1.60970 1.15721 1.12942 1.20992 0.76223 0.83701 0.88543 1.90725 1.54768 1.82017 1.18637 1.21909 1.04563 0.92385 0.99256 1.21545 1.03466 0.83920 0.91389 1.45699 1.14677 1.19714 1.42190 1.21997 0.87626 1.03277 0.98671 1.21973 0.98031 0.87165 1.02112 1.43569 1.13020 1.24615 1.43497 0.72526 1.20291 0.83259 0.86811 0.82212 1.90900 1.51650 1.36544 1.62455 1.20666 0.85365 0.84027 0.83844 1.90888 1.23637 1.77599 1.49000 1.21736 0.94511 0.84258 0.98886 0.94068 0.99306 0.89162 0.75371 0.74579 0.83849 0.88368 0.91151 0.85584 0.76849 0.75371 0.93280 0.96393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.30 10.09 21.65 0.22 -54.09 16 2 C -0.06 -3.54 5.49 84.86 0.47 -3.07 16 3 Si 0.98 43.98 29.55 68.60 2.03 46.01 16 4 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 7 C -0.24 -13.01 10.28 84.03 0.86 -12.15 16 8 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 9 N -0.62 -31.10 3.40 -691.31 -2.35 -33.45 16 10 C 0.13 6.26 5.62 86.85 0.49 6.75 16 11 C 0.09 3.17 4.06 31.98 0.13 3.30 16 12 H 0.09 2.73 8.01 -2.38 -0.02 2.71 16 13 O -0.57 -19.12 13.47 -148.98 -2.01 -21.13 16 14 C 0.15 5.52 3.05 46.18 0.14 5.66 16 15 H 0.07 3.14 7.55 -2.39 -0.02 3.12 16 16 N -0.70 -18.33 5.10 -436.92 -2.23 -20.56 16 17 C 0.52 13.30 7.83 87.66 0.69 13.99 16 18 O -0.58 -20.19 15.63 -3.03 -0.05 -20.24 16 19 C -0.14 -2.17 6.02 29.85 0.18 -1.99 16 20 C 0.12 1.93 4.70 86.38 0.41 2.34 16 21 N -0.50 -6.68 2.65 -641.58 -1.70 -8.39 16 22 C 0.00 0.00 10.25 82.57 0.85 0.85 16 23 C 0.03 -0.01 11.10 82.57 0.92 0.90 16 24 N -0.60 -4.05 5.38 -311.85 -1.68 -5.72 16 25 H 0.43 0.76 8.93 -92.70 -0.83 -0.06 16 26 C 0.49 9.72 8.03 87.07 0.70 10.42 16 27 O -0.54 -15.79 17.85 10.94 0.20 -15.59 16 28 C 0.48 10.75 7.73 87.07 0.67 11.43 16 29 O -0.54 -17.72 16.67 10.92 0.18 -17.54 16 30 C 0.13 5.44 7.01 86.68 0.61 6.05 16 31 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 32 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 33 H 0.09 4.72 5.86 -2.39 -0.01 4.71 16 34 H 0.40 10.09 9.11 -74.06 -0.67 9.42 16 35 H 0.42 8.02 8.56 -92.71 -0.79 7.23 16 36 H 0.14 1.03 8.14 -2.38 -0.02 1.01 16 37 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.07 1.69 7.42 -2.38 -0.02 1.68 16 39 H 0.13 1.52 8.00 -2.38 -0.02 1.50 16 40 H 0.21 -1.09 8.06 -2.91 -0.02 -1.12 16 41 H 0.23 -2.48 8.06 -2.91 -0.02 -2.50 16 42 H 0.05 1.84 8.03 -2.38 -0.02 1.82 16 43 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -91.05 368.59 -1.49 -92.54 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -1.20 Total: 13.70 kcal Atomic # 6 Polarization: 37.37 SS G_CDS: 7.10 Total: 44.47 kcal Atomic # 7 Polarization: -114.47 SS G_CDS: -7.74 Total: -122.21 kcal Atomic # 8 Polarization: -72.82 SS G_CDS: -1.68 Total: -74.50 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -91.05 -1.49 -92.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196953715.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.094 kcal (2) G-P(sol) polarization free energy of solvation -91.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds