Wall clock time and date at job start Tue Mar 31 2020 20:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00291 * 2 1 4 4 H 1.48506 * 109.46810 * 240.00186 * 3 2 1 5 5 H 1.48503 * 109.46898 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47239 * 119.99878 * 3 2 1 7 7 C 1.38814 * 119.99514 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99870 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00289 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.64526 * 359.95988 * 9 7 2 11 11 C 1.55124 * 104.94099 * 204.03682 * 10 9 7 12 12 H 1.09005 * 110.93424 * 81.21738 * 11 10 9 13 13 O 1.42904 * 111.16588 * 205.13287 * 11 10 9 14 14 C 1.55156 * 101.48849 * 323.22443 * 11 10 9 15 15 H 1.08995 * 110.71767 * 276.83172 * 14 11 10 16 16 N 1.46501 * 110.72206 * 153.73029 * 14 11 10 17 17 C 1.34778 * 119.99524 * 157.43887 * 16 14 11 18 18 O 1.21279 * 120.00229 * 0.02562 * 17 16 14 19 19 C 1.50697 * 119.99545 * 180.02562 * 17 16 14 20 20 C 1.52995 * 109.47218 * 180.02562 * 19 17 16 21 21 O 1.42898 * 109.47637 * 180.02562 * 20 19 17 22 22 C 1.35960 * 117.00517 * 180.02562 * 21 20 19 23 23 C 1.38659 * 120.05750 * 0.23293 * 22 21 20 24 24 C 1.38183 * 119.96624 * 180.27927 * 23 22 21 25 25 C 1.38271 * 120.09338 * 359.48558 * 24 23 22 26 26 C 1.38250 * 120.12488 * 0.25977 * 25 24 23 27 27 C 1.38333 * 120.03275 * 359.97438 * 26 25 24 28 28 F 1.35100 * 120.05092 * 180.02562 * 27 26 25 29 29 C 1.47018 * 125.64964 * 180.02562 * 9 7 2 30 30 H 0.97002 * 119.99852 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.37311 * 323.00374 * 10 9 7 32 32 H 1.08998 * 110.36813 * 85.32809 * 10 9 7 33 33 H 0.96706 * 113.99581 * 292.17030 * 13 11 10 34 34 H 0.96998 * 119.99677 * 337.44252 * 16 14 11 35 35 H 1.09005 * 109.47314 * 60.00655 * 19 17 16 36 36 H 1.09002 * 109.47662 * 300.00289 * 19 17 16 37 37 H 1.09004 * 109.47024 * 60.00328 * 20 19 17 38 38 H 1.09002 * 109.47357 * 300.00298 * 20 19 17 39 39 H 1.07995 * 120.02218 * 0.04230 * 23 22 21 40 40 H 1.08002 * 119.95612 * 179.77125 * 24 23 22 41 41 H 1.07996 * 119.93118 * 180.23504 * 25 24 23 42 42 H 1.08002 * 119.98207 * 179.97438 * 26 25 24 43 43 H 1.09000 * 109.88104 * 59.48577 * 29 9 7 44 44 H 1.09003 * 110.01341 * 298.39868 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6962 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0016 10 6 -0.1416 -2.5331 0.0031 11 6 -0.4044 -3.9344 0.6143 12 1 -0.3567 -3.8997 1.7028 13 8 -1.6577 -4.4621 0.1752 14 6 0.7782 -4.7524 0.0316 15 1 0.5468 -5.1014 -0.9747 16 7 1.1091 -5.8803 0.9061 17 6 1.7585 -6.9512 0.4081 18 8 2.0693 -6.9809 -0.7638 19 6 2.0983 -8.1115 1.3075 20 6 2.8286 -9.1862 0.4997 21 8 3.1504 -10.2868 1.3523 22 6 3.8067 -11.3346 0.7868 23 6 4.1381 -11.3016 -0.5592 24 6 4.8001 -12.3701 -1.1334 25 6 5.1419 -13.4678 -0.3653 26 6 4.8180 -13.5025 0.9783 27 6 4.1511 -12.4378 1.5574 28 9 3.8348 -12.4710 2.8704 29 6 1.9316 -3.7275 0.0028 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5989 -1.7581 0.6182 32 1 -0.5283 -2.4879 -1.0150 33 1 -2.4265 -3.9831 0.5140 34 1 0.8608 -5.8562 1.8434 35 1 1.1815 -8.5295 1.7235 36 1 2.7410 -7.7672 2.1178 37 1 3.7454 -8.7680 0.0841 38 1 2.1863 -9.5307 -0.3109 39 1 3.8757 -10.4430 -1.1594 40 1 5.0549 -12.3458 -2.1827 41 1 5.6626 -14.2998 -0.8159 42 1 5.0857 -14.3612 1.5761 43 1 2.5586 -3.8499 0.8860 44 1 2.5292 -3.8674 -0.8980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198345378.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:41 Heat of formation + Delta-G solvation = -135.452075 kcal Electronic energy + Delta-G solvation = -28221.737386 eV Core-core repulsion = 23860.919563 eV Total energy + Delta-G solvation = -4360.817822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.83175 -41.35261 -40.83490 -39.44135 -38.44261 -36.70013 -35.61866 -33.81452 -33.11114 -31.67648 -30.68940 -30.09203 -28.75713 -26.66169 -25.56291 -23.56978 -23.19068 -22.47981 -21.80669 -21.33493 -19.67971 -19.07729 -18.55475 -18.18362 -17.64062 -17.61949 -17.56907 -17.27654 -16.62347 -16.57281 -15.96224 -15.87393 -15.55276 -15.44115 -15.38047 -14.91413 -14.82101 -14.54183 -14.12104 -13.94627 -13.84851 -13.63553 -13.22365 -13.15871 -12.99770 -12.92783 -12.78185 -12.70791 -12.54367 -12.11606 -12.05725 -11.93726 -11.85768 -11.44800 -11.25807 -10.86985 -10.77009 -10.22251 -9.95978 -9.25368 -8.98728 -7.83211 -5.29603 0.11385 0.24791 1.46667 1.49770 1.52063 1.55990 1.60355 2.35359 2.48012 2.59355 3.06510 3.21538 3.28360 3.52207 3.61160 3.72502 3.81695 3.88006 3.91833 4.01440 4.06572 4.18494 4.20113 4.31597 4.37157 4.41817 4.51444 4.58572 4.67532 4.73034 4.82983 4.93220 4.97498 5.08950 5.25255 5.36352 5.41221 5.42837 5.42923 5.66859 5.68100 6.20034 6.20926 6.45981 6.85412 7.03432 7.15001 7.67762 8.29675 9.18252 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022050 B = 0.001880 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.553622 B =14890.740498 C =15368.166996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.062 4.062 3 Si 0.984 3.016 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.245 4.245 8 H 0.081 0.919 9 N -0.619 5.619 10 C 0.133 3.867 11 C 0.091 3.909 12 H 0.089 0.911 13 O -0.568 6.568 14 C 0.156 3.844 15 H 0.077 0.923 16 N -0.700 5.700 17 C 0.520 3.480 18 O -0.582 6.582 19 C -0.127 4.127 20 C 0.077 3.923 21 O -0.323 6.323 22 C 0.078 3.922 23 C -0.192 4.192 24 C -0.087 4.087 25 C -0.124 4.124 26 C -0.116 4.116 27 C 0.037 3.963 28 F -0.148 7.148 29 C 0.131 3.869 30 H 0.251 0.749 31 H 0.091 0.909 32 H -0.010 1.010 33 H 0.398 0.602 34 H 0.419 0.581 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.142 0.858 40 H 0.158 0.842 41 H 0.168 0.832 42 H 0.163 0.837 43 H 0.043 0.957 44 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.662 -26.316 4.265 27.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.255 4.255 3 Si 0.811 3.189 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.199 1.199 7 C -0.373 4.373 8 H 0.099 0.901 9 N -0.347 5.347 10 C 0.007 3.993 11 C 0.030 3.970 12 H 0.107 0.893 13 O -0.375 6.375 14 C 0.049 3.951 15 H 0.095 0.905 16 N -0.352 5.352 17 C 0.308 3.692 18 O -0.462 6.462 19 C -0.167 4.167 20 C 0.002 3.998 21 O -0.237 6.237 22 C 0.032 3.968 23 C -0.211 4.211 24 C -0.105 4.105 25 C -0.142 4.142 26 C -0.134 4.134 27 C 0.017 3.983 28 F -0.127 7.127 29 C 0.004 3.996 30 H 0.060 0.940 31 H 0.109 0.891 32 H 0.008 0.992 33 H 0.248 0.752 34 H 0.257 0.743 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.160 0.840 40 H 0.176 0.824 41 H 0.185 0.815 42 H 0.181 0.819 43 H 0.060 0.940 44 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 6.133 -26.513 3.394 27.424 hybrid contribution -0.280 1.840 0.395 1.903 sum 5.853 -24.673 3.789 25.639 Atomic orbital electron populations 1.69952 1.06092 1.25472 1.58019 1.25645 0.96751 1.00971 1.02124 0.85080 0.77151 0.78456 0.78187 1.20831 1.21654 1.19923 1.19401 0.91052 0.83392 1.43482 0.90117 1.44530 1.02417 1.00614 1.87137 1.22411 0.84602 0.94777 0.97539 1.23287 0.83338 0.92490 0.97847 0.89305 1.86384 1.15738 1.58679 1.76742 1.21539 0.93100 0.85542 0.94879 0.90453 1.45728 1.58597 1.16888 1.13972 1.20804 0.76489 0.83719 0.88208 1.90719 1.54645 1.81571 1.19310 1.21392 1.04721 0.91830 0.98738 1.22451 1.00260 0.84763 0.92368 1.85989 1.71846 1.26643 1.39205 1.19266 0.96391 0.88130 0.93021 1.21476 1.04326 1.02495 0.92766 1.21462 0.95321 0.92025 1.01718 1.21377 1.00716 0.99753 0.92359 1.21374 0.97796 0.97182 0.97053 1.17421 1.06469 0.96124 0.78268 1.91456 1.91622 1.96779 1.32823 1.21688 0.94699 0.84675 0.98532 0.93964 0.89141 0.99202 0.75215 0.74349 0.85239 0.85412 0.91275 0.91125 0.84034 0.82427 0.81497 0.81924 0.93954 0.96720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.41 10.09 21.65 0.22 -54.19 16 2 C -0.06 -3.44 5.49 84.86 0.47 -2.97 16 3 Si 0.98 44.70 29.55 68.60 2.03 46.73 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.24 -13.59 10.27 84.03 0.86 -12.72 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 9 N -0.62 -31.71 3.40 -691.58 -2.35 -34.06 16 10 C 0.13 6.32 5.63 86.93 0.49 6.81 16 11 C 0.09 3.21 4.06 32.06 0.13 3.34 16 12 H 0.09 2.72 8.01 -2.38 -0.02 2.70 16 13 O -0.57 -17.99 13.48 -148.98 -2.01 -20.00 16 14 C 0.16 5.61 3.00 46.18 0.14 5.75 16 15 H 0.08 3.20 7.62 -2.39 -0.02 3.18 16 16 N -0.70 -18.53 5.12 -436.93 -2.24 -20.77 16 17 C 0.52 13.88 7.83 87.66 0.69 14.56 16 18 O -0.58 -20.64 15.67 -3.03 -0.05 -20.69 16 19 C -0.13 -2.29 6.07 29.85 0.18 -2.11 16 20 C 0.08 1.58 4.03 71.98 0.29 1.87 16 21 O -0.32 -7.37 10.00 -93.10 -0.93 -8.30 16 22 C 0.08 1.68 6.69 22.53 0.15 1.83 16 23 C -0.19 -3.37 9.04 22.36 0.20 -3.17 16 24 C -0.09 -1.08 10.04 22.26 0.22 -0.86 16 25 C -0.12 -1.28 10.04 22.28 0.22 -1.06 16 26 C -0.12 -1.58 10.02 22.30 0.22 -1.36 16 27 C 0.04 0.76 7.31 22.45 0.16 0.92 16 28 F -0.15 -3.51 17.11 44.97 0.77 -2.74 16 29 C 0.13 5.59 7.00 86.73 0.61 6.19 16 30 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 31 H 0.09 4.73 5.87 -2.39 -0.01 4.72 16 32 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 33 H 0.40 9.21 9.12 -74.05 -0.68 8.53 16 34 H 0.42 8.11 8.54 -92.71 -0.79 7.31 16 35 H 0.13 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.07 1.49 7.61 -2.38 -0.02 1.47 16 38 H 0.07 1.49 7.63 -2.39 -0.02 1.47 16 39 H 0.14 2.40 6.30 -2.91 -0.02 2.38 16 40 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 41 H 0.17 0.60 8.06 -2.91 -0.02 0.58 16 42 H 0.16 1.40 8.06 -2.91 -0.02 1.37 16 43 H 0.04 1.71 8.03 -2.39 -0.02 1.69 16 44 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -74.93 373.87 0.07 -74.86 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -0.41 Total: 22.12 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: 5.04 Total: 17.03 kcal Atomic # 7 Polarization: -104.65 SS G_CDS: -4.37 Total: -109.02 kcal Atomic # 8 Polarization: -45.99 SS G_CDS: -2.99 Total: -48.98 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.77 Total: -2.74 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -74.93 0.07 -74.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198345378.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.593 kcal (2) G-P(sol) polarization free energy of solvation -74.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds