Wall clock time and date at job start Tue Mar 31 2020 21:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41266 * 126.70381 * 2 1 4 4 C 1.36825 * 103.84579 * 180.12689 * 3 2 1 5 5 C 1.47516 * 126.94253 * 179.90865 * 4 3 2 6 6 O 1.21588 * 119.99987 * 359.71072 * 5 4 3 7 7 N 1.34777 * 119.99853 * 179.71430 * 5 4 3 8 8 C 1.46496 * 119.99613 * 180.02562 * 7 5 4 9 9 H 1.09004 * 110.27899 * 34.29556 * 8 7 5 10 10 C 1.53994 * 110.30947 * 272.20590 * 8 7 5 11 11 N 1.47903 * 107.05808 * 239.86318 * 10 8 7 12 12 C 1.46898 * 111.00038 * 145.84057 * 11 10 8 13 13 C 1.50704 * 109.47245 * 169.99669 * 12 11 10 14 14 O 1.21296 * 119.99883 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00042 * 180.02562 * 13 12 11 16 16 C 1.37096 * 120.00115 * 180.02562 * 15 13 12 17 17 H 1.08009 * 119.99655 * 359.97438 * 16 15 13 18 18 C 1.38950 * 120.00443 * 179.97438 * 16 15 13 19 19 N 1.31415 * 119.99704 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00100 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47443 * 90.00002 * 20 18 16 22 22 H 1.48500 * 109.46872 * 210.00018 * 20 18 16 23 23 H 1.48500 * 109.47126 * 329.99674 * 20 18 16 24 24 C 1.48530 * 105.82151 * 25.32777 * 11 10 8 25 25 C 1.54599 * 110.30629 * 156.38385 * 8 7 5 26 26 H 1.09001 * 110.72525 * 215.31141 * 25 8 7 27 27 O 1.42896 * 110.72422 * 338.59812 * 25 8 7 28 28 O 1.34636 * 106.11114 * 359.65043 * 4 3 2 29 29 N 1.20884 * 111.47049 * 0.23594 * 28 4 3 30 30 H 1.09001 * 109.46945 * 270.29796 * 1 2 3 31 31 H 1.08998 * 109.47066 * 30.30159 * 1 2 3 32 32 H 1.09002 * 109.47069 * 150.29895 * 1 2 3 33 33 H 1.07999 * 128.07675 * 0.02562 * 3 2 1 34 34 H 0.96996 * 119.99871 * 359.97438 * 7 5 4 35 35 H 1.09004 * 109.91534 * 359.21276 * 10 8 7 36 36 H 1.09001 * 109.92113 * 120.31116 * 10 8 7 37 37 H 1.08997 * 109.47532 * 290.00169 * 12 11 10 38 38 H 1.08998 * 109.47305 * 50.00078 * 12 11 10 39 39 H 0.97001 * 120.00289 * 0.02562 * 15 13 12 40 40 H 0.97000 * 119.99850 * 180.02562 * 19 18 16 41 41 H 1.09002 * 110.67005 * 79.22564 * 24 11 10 42 42 H 1.09001 * 110.66855 * 202.19579 * 24 11 10 43 43 H 0.96706 * 113.99929 * 179.97438 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1326 0.0000 4 6 3.6121 0.6011 -0.0029 5 6 4.8870 1.3431 -0.0061 6 8 4.8828 2.5590 -0.0116 7 7 6.0566 0.6733 -0.0030 8 6 7.3227 1.4102 -0.0056 9 1 7.2241 2.3327 0.5668 10 6 7.7571 1.7213 -1.4498 11 7 9.0743 1.0804 -1.6542 12 6 9.2181 0.6016 -3.0355 13 6 10.6454 0.1812 -3.2755 14 8 11.4623 0.2713 -2.3834 15 7 11.0140 -0.2947 -4.4813 16 6 12.3122 -0.6775 -4.6995 17 1 13.0396 -0.5973 -3.9051 18 6 12.6923 -1.1687 -5.9425 19 7 11.8071 -1.2667 -6.9088 20 14 14.4613 -1.6896 -6.2398 21 1 14.6178 -3.1268 -5.9008 22 1 14.8062 -1.4777 -7.6686 23 1 15.3663 -0.8784 -5.3866 24 6 9.1290 -0.0489 -0.6910 25 6 8.4545 0.5343 0.5792 26 1 9.1592 1.1427 1.1462 27 8 7.9166 -0.5098 1.3931 28 8 3.4540 -0.7359 0.0035 29 7 2.2848 -1.0432 0.0050 30 1 -0.3633 0.0053 1.0277 31 1 -0.3633 0.8872 -0.5185 32 1 -0.3633 -0.8927 -0.5092 33 1 2.0678 2.1747 0.0004 34 1 6.0599 -0.2967 0.0017 35 1 7.0316 1.3110 -2.1523 36 1 7.8398 2.7992 -1.5888 37 1 8.5568 -0.2499 -3.1956 38 1 8.9540 1.4018 -3.7268 39 1 10.3609 -0.3663 -5.1949 40 1 12.0723 -1.6099 -7.7765 41 1 8.5667 -0.9034 -1.0675 42 1 10.1620 -0.3299 -0.4859 43 1 8.5859 -1.0883 1.7838 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219175495.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:29 Heat of formation + Delta-G solvation = -38.641328 kcal Electronic energy + Delta-G solvation = -28855.992760 eV Core-core repulsion = 24519.292928 eV Total energy + Delta-G solvation = -4336.699832 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.35717 -40.48292 -39.01345 -37.86959 -35.91244 -35.35853 -34.47149 -33.83962 -32.46817 -31.29638 -30.29477 -29.11535 -28.22867 -26.64233 -24.65041 -23.97789 -23.21262 -21.53640 -20.87407 -20.46477 -19.25248 -18.76538 -18.13544 -17.95406 -17.56690 -16.63531 -16.33203 -16.03364 -15.55903 -15.23238 -14.85337 -14.77693 -14.48000 -14.25183 -14.02803 -13.82313 -13.63955 -13.57221 -13.42351 -13.22547 -13.08369 -12.87994 -12.21440 -12.17646 -11.81228 -11.71134 -11.51213 -11.35391 -11.11720 -10.93813 -10.64411 -10.49624 -10.40928 -10.24072 -10.10699 -10.09862 -9.51870 -9.47039 -8.57407 -8.07918 -7.97572 -6.43552 -3.84521 0.45543 1.66078 2.24410 2.66228 2.83985 3.16189 3.25170 3.30814 3.65968 3.67189 3.87513 4.08001 4.11181 4.27611 4.42109 4.51653 4.57939 4.66004 4.93076 5.00867 5.02091 5.09485 5.16556 5.19159 5.22557 5.29378 5.29889 5.55058 5.61734 5.70445 5.72818 5.79574 5.89570 6.03815 6.18984 6.23346 6.93949 7.03481 7.05153 7.37386 7.53228 7.65710 7.76485 8.03691 8.59262 9.15987 9.52075 10.03510 10.74171 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017868 B = 0.002182 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.699879 B =12826.309261 C =13545.649466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.008 3.992 3 C -0.152 4.152 4 C -0.079 4.079 5 C 0.605 3.395 6 O -0.514 6.514 7 N -0.692 5.692 8 C 0.144 3.856 9 H 0.108 0.892 10 C 0.023 3.977 11 N -0.484 5.484 12 C 0.037 3.963 13 C 0.445 3.555 14 O -0.578 6.578 15 N -0.564 5.564 16 C -0.298 4.298 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.930 3.070 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.269 1.269 24 C 0.008 3.992 25 C 0.093 3.907 26 H 0.090 0.910 27 O -0.562 6.562 28 O 0.119 5.881 29 N -0.345 5.345 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.184 0.816 34 H 0.414 0.586 35 H 0.054 0.946 36 H 0.094 0.906 37 H 0.051 0.949 38 H 0.091 0.909 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.049 0.951 42 H 0.105 0.895 43 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.842 2.734 13.838 24.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.149 4.149 3 C -0.174 4.174 4 C -0.145 4.145 5 C 0.388 3.612 6 O -0.390 6.390 7 N -0.343 5.343 8 C 0.039 3.961 9 H 0.126 0.874 10 C -0.107 4.107 11 N -0.209 5.209 12 C -0.094 4.094 13 C 0.230 3.770 14 O -0.462 6.462 15 N -0.201 5.201 16 C -0.428 4.428 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.543 5.543 20 Si 0.757 3.243 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.120 4.120 25 C 0.033 3.967 26 H 0.107 0.893 27 O -0.368 6.368 28 O 0.046 5.954 29 N -0.046 5.046 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.201 0.799 34 H 0.251 0.749 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.069 0.931 38 H 0.109 0.891 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.123 0.877 43 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -19.614 2.940 14.154 24.366 hybrid contribution 0.248 -0.832 -0.909 1.257 sum -19.367 2.108 13.245 23.557 Atomic orbital electron populations 1.20215 0.85187 1.04229 1.03731 1.23686 0.99468 0.88293 1.03465 1.22873 0.89896 1.01776 1.02899 1.24234 0.97316 0.84069 1.08902 1.16527 0.81129 0.86187 0.77314 1.90885 1.86052 1.11739 1.50279 1.45716 1.04450 1.11430 1.72739 1.21990 0.81469 0.95837 0.96810 0.87360 1.23433 0.90856 1.01747 0.94615 1.64466 1.27617 1.25085 1.03755 1.22091 0.97281 0.99789 0.90286 1.19651 0.89000 0.84240 0.84104 1.90500 1.52950 1.58997 1.43764 1.41860 1.11277 1.56052 1.10916 1.19687 0.86318 1.38780 0.98019 0.87901 1.25272 0.99935 0.97547 0.95257 1.69614 1.34517 1.46405 1.03759 0.85851 0.81993 0.78924 0.77486 1.20441 1.20928 1.19399 1.24053 1.03052 0.92907 0.91972 1.23075 0.93537 0.88882 0.91193 0.89265 1.86348 1.38145 1.44842 1.67456 1.85000 1.21458 1.22092 1.66850 1.73756 0.89246 1.24326 1.17257 0.89845 0.89618 0.90199 0.79875 0.74877 0.92763 0.88762 0.93071 0.89096 0.77510 0.91860 0.93231 0.87691 0.76373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.47 36.01 0.38 -0.02 16 2 C 0.01 0.08 7.31 -82.17 -0.60 -0.52 16 3 C -0.15 -1.38 10.92 -38.94 -0.43 -1.80 16 4 C -0.08 -0.83 7.29 -36.31 -0.26 -1.10 16 5 C 0.61 6.99 7.82 -12.48 -0.10 6.90 16 6 O -0.51 -7.14 16.59 5.29 0.09 -7.05 16 7 N -0.69 -7.35 4.63 -53.54 -0.25 -7.60 16 8 C 0.14 1.61 3.27 -66.57 -0.22 1.40 16 9 H 0.11 1.22 7.60 -51.93 -0.39 0.82 16 10 C 0.02 0.29 6.46 -2.75 -0.02 0.27 16 11 N -0.48 -7.53 4.91 -231.72 -1.14 -8.67 16 12 C 0.04 0.64 5.19 -4.98 -0.03 0.62 16 13 C 0.44 10.21 7.61 -10.98 -0.08 10.13 16 14 O -0.58 -15.07 14.64 5.54 0.08 -14.98 16 15 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 16 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 17 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 18 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 19 N -0.90 -24.36 13.05 55.50 0.72 -23.64 16 20 Si 0.93 20.85 29.55 -169.99 -5.02 15.83 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 C 0.01 0.12 5.67 -1.76 -0.01 0.11 16 25 C 0.09 1.00 4.36 -24.73 -0.11 0.89 16 26 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 27 O -0.56 -5.17 12.08 -35.23 -0.43 -5.60 16 28 O 0.12 1.31 11.04 15.57 0.17 1.48 16 29 N -0.34 -3.83 12.04 33.52 0.40 -3.43 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.18 1.29 8.06 -52.49 -0.42 0.86 16 34 H 0.41 4.11 7.64 -40.82 -0.31 3.80 16 35 H 0.05 0.67 7.56 -51.93 -0.39 0.28 16 36 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.05 0.81 7.83 -51.93 -0.41 0.40 16 38 H 0.09 1.44 8.08 -51.93 -0.42 1.02 16 39 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 40 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 41 H 0.05 0.68 7.81 -51.93 -0.41 0.27 16 42 H 0.10 1.71 7.10 -51.93 -0.37 1.35 16 43 H 0.39 2.22 9.12 45.56 0.42 2.63 16 LS Contribution 371.56 15.07 5.60 5.60 Total: -1.00 -33.50 371.56 -6.19 -39.70 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -4.65 Total: 13.48 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: -1.71 Total: 8.99 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: -0.31 Total: -57.45 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.08 Total: -26.15 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.50 -6.19 -39.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219175495.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.055 kcal (2) G-P(sol) polarization free energy of solvation -33.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds