Wall clock time and date at job start Tue Mar 31 2020 21:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41266 * 126.70381 * 2 1 4 4 C 1.36825 * 103.84579 * 180.12689 * 3 2 1 5 5 C 1.47516 * 126.94253 * 179.90865 * 4 3 2 6 6 O 1.21588 * 119.99987 * 359.71072 * 5 4 3 7 7 N 1.34777 * 119.99853 * 179.71430 * 5 4 3 8 8 C 1.46496 * 119.99613 * 180.02562 * 7 5 4 9 9 H 1.09004 * 110.27899 * 34.29556 * 8 7 5 10 10 C 1.53994 * 110.30947 * 272.20590 * 8 7 5 11 11 N 1.47903 * 107.05808 * 239.86318 * 10 8 7 12 12 C 1.46898 * 111.00038 * 145.84057 * 11 10 8 13 13 C 1.50704 * 109.47245 * 169.99669 * 12 11 10 14 14 O 1.21296 * 119.99883 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00042 * 180.02562 * 13 12 11 16 16 C 1.37096 * 120.00115 * 180.02562 * 15 13 12 17 17 H 1.08009 * 119.99655 * 359.97438 * 16 15 13 18 18 C 1.38950 * 120.00443 * 179.97438 * 16 15 13 19 19 N 1.31415 * 119.99704 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00100 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47443 * 90.00002 * 20 18 16 22 22 H 1.48500 * 109.46872 * 210.00018 * 20 18 16 23 23 H 1.48500 * 109.47126 * 329.99674 * 20 18 16 24 24 C 1.48530 * 105.82151 * 25.32777 * 11 10 8 25 25 C 1.54599 * 110.30629 * 156.38385 * 8 7 5 26 26 H 1.09001 * 110.72525 * 215.31141 * 25 8 7 27 27 O 1.42896 * 110.72422 * 338.59812 * 25 8 7 28 28 O 1.34636 * 106.11114 * 359.65043 * 4 3 2 29 29 N 1.20884 * 111.47049 * 0.23594 * 28 4 3 30 30 H 1.09001 * 109.46945 * 270.29796 * 1 2 3 31 31 H 1.08998 * 109.47066 * 30.30159 * 1 2 3 32 32 H 1.09002 * 109.47069 * 150.29895 * 1 2 3 33 33 H 1.07999 * 128.07675 * 0.02562 * 3 2 1 34 34 H 0.96996 * 119.99871 * 359.97438 * 7 5 4 35 35 H 1.09004 * 109.91534 * 359.21276 * 10 8 7 36 36 H 1.09001 * 109.92113 * 120.31116 * 10 8 7 37 37 H 1.08997 * 109.47532 * 290.00169 * 12 11 10 38 38 H 1.08998 * 109.47305 * 50.00078 * 12 11 10 39 39 H 0.97001 * 120.00289 * 0.02562 * 15 13 12 40 40 H 0.97000 * 119.99850 * 180.02562 * 19 18 16 41 41 H 1.09002 * 110.67005 * 79.22564 * 24 11 10 42 42 H 1.09001 * 110.66855 * 202.19579 * 24 11 10 43 43 H 0.96706 * 113.99929 * 179.97438 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1326 0.0000 4 6 3.6121 0.6011 -0.0029 5 6 4.8870 1.3431 -0.0061 6 8 4.8828 2.5590 -0.0116 7 7 6.0566 0.6733 -0.0030 8 6 7.3227 1.4102 -0.0056 9 1 7.2241 2.3327 0.5668 10 6 7.7571 1.7213 -1.4498 11 7 9.0743 1.0804 -1.6542 12 6 9.2181 0.6016 -3.0355 13 6 10.6454 0.1812 -3.2755 14 8 11.4623 0.2713 -2.3834 15 7 11.0140 -0.2947 -4.4813 16 6 12.3122 -0.6775 -4.6995 17 1 13.0396 -0.5973 -3.9051 18 6 12.6923 -1.1687 -5.9425 19 7 11.8071 -1.2667 -6.9088 20 14 14.4613 -1.6896 -6.2398 21 1 14.6178 -3.1268 -5.9008 22 1 14.8062 -1.4777 -7.6686 23 1 15.3663 -0.8784 -5.3866 24 6 9.1290 -0.0489 -0.6910 25 6 8.4545 0.5343 0.5792 26 1 9.1592 1.1427 1.1462 27 8 7.9166 -0.5098 1.3931 28 8 3.4540 -0.7359 0.0035 29 7 2.2848 -1.0432 0.0050 30 1 -0.3633 0.0053 1.0277 31 1 -0.3633 0.8872 -0.5185 32 1 -0.3633 -0.8927 -0.5092 33 1 2.0678 2.1747 0.0004 34 1 6.0599 -0.2967 0.0017 35 1 7.0316 1.3110 -2.1523 36 1 7.8398 2.7992 -1.5888 37 1 8.5568 -0.2499 -3.1956 38 1 8.9540 1.4018 -3.7268 39 1 10.3609 -0.3663 -5.1949 40 1 12.0723 -1.6099 -7.7765 41 1 8.5667 -0.9034 -1.0675 42 1 10.1620 -0.3299 -0.4859 43 1 8.5859 -1.0883 1.7838 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219175495.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:28 Heat of formation + Delta-G solvation = -67.656140 kcal Electronic energy + Delta-G solvation = -28857.250937 eV Core-core repulsion = 24519.292928 eV Total energy + Delta-G solvation = -4337.958008 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.09347 -41.47080 -40.32186 -39.34905 -36.91115 -36.08573 -35.88855 -35.30452 -33.33518 -33.20880 -31.44922 -29.63724 -29.25363 -28.12523 -26.18026 -25.05416 -23.95767 -22.70618 -21.75863 -21.32587 -21.01384 -19.88914 -19.53449 -18.89820 -18.52813 -17.79903 -17.43634 -17.10549 -16.65957 -16.57354 -16.33507 -15.98682 -15.78747 -15.60423 -15.02011 -14.92515 -14.77011 -14.30185 -14.22193 -14.13989 -14.04104 -13.77521 -13.68863 -13.45559 -13.28430 -12.96465 -12.73037 -12.53257 -12.43538 -12.40751 -12.12598 -12.01264 -11.57807 -11.47374 -11.14188 -11.00573 -10.89422 -10.39118 -10.32804 -10.00359 -9.39579 -8.46055 -5.94575 -0.33633 0.97836 1.38202 1.41984 1.43178 1.54761 1.80182 2.01940 2.05664 2.28530 2.66336 3.06550 3.09217 3.20258 3.34214 3.39669 3.50306 3.69147 3.84259 3.96363 4.07731 4.17389 4.28016 4.33209 4.34593 4.38567 4.49797 4.64230 4.68684 4.73698 4.78839 4.80071 4.85041 4.96818 5.17308 5.18342 5.41522 5.74447 5.82633 6.04498 6.17423 6.60629 6.70188 6.85926 7.00170 7.13452 7.56897 8.12147 8.71412 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017868 B = 0.002182 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.699879 B =12826.309261 C =13545.649466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.013 3.987 3 C -0.145 4.145 4 C -0.093 4.093 5 C 0.610 3.390 6 O -0.539 6.539 7 N -0.685 5.685 8 C 0.148 3.852 9 H 0.113 0.887 10 C 0.028 3.972 11 N -0.503 5.503 12 C 0.049 3.951 13 C 0.444 3.556 14 O -0.612 6.612 15 N -0.576 5.576 16 C -0.330 4.330 17 H 0.081 0.919 18 C -0.015 4.015 19 N -0.922 5.922 20 Si 0.993 3.007 21 H -0.271 1.271 22 H -0.272 1.272 23 H -0.272 1.272 24 C 0.010 3.990 25 C 0.111 3.889 26 H 0.098 0.902 27 O -0.563 6.563 28 O 0.107 5.893 29 N -0.370 5.370 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.203 0.797 34 H 0.418 0.582 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.070 0.930 38 H 0.108 0.892 39 H 0.395 0.605 40 H 0.277 0.723 41 H 0.051 0.949 42 H 0.076 0.924 43 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.374 2.939 14.219 25.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.145 4.145 3 C -0.167 4.167 4 C -0.159 4.159 5 C 0.394 3.606 6 O -0.417 6.417 7 N -0.336 5.336 8 C 0.042 3.958 9 H 0.130 0.870 10 C -0.101 4.101 11 N -0.228 5.228 12 C -0.082 4.082 13 C 0.231 3.769 14 O -0.498 6.498 15 N -0.213 5.213 16 C -0.459 4.459 17 H 0.099 0.901 18 C -0.215 4.215 19 N -0.563 5.563 20 Si 0.817 3.183 21 H -0.196 1.196 22 H -0.197 1.197 23 H -0.197 1.197 24 C -0.119 4.119 25 C 0.051 3.949 26 H 0.115 0.885 27 O -0.371 6.371 28 O 0.036 5.964 29 N -0.074 5.074 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.100 0.900 33 H 0.221 0.779 34 H 0.256 0.744 35 H 0.077 0.923 36 H 0.117 0.883 37 H 0.087 0.913 38 H 0.126 0.874 39 H 0.229 0.771 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -21.147 3.123 14.544 25.854 hybrid contribution 0.651 -0.893 -0.964 1.467 sum -20.496 2.230 13.579 24.687 Atomic orbital electron populations 1.20420 0.82623 1.05385 1.05022 1.24293 1.01012 0.87566 1.01640 1.23227 0.89298 1.02767 1.01448 1.24170 0.97402 0.84246 1.10104 1.16584 0.81494 0.85883 0.76674 1.90869 1.86468 1.12731 1.51634 1.45662 1.04133 1.11572 1.72218 1.21915 0.81708 0.96172 0.95959 0.86956 1.23424 0.89355 1.01664 0.95660 1.64378 1.29801 1.25797 1.02873 1.21937 0.93234 1.01019 0.92038 1.20642 0.91082 0.82317 0.82827 1.90475 1.54808 1.59863 1.44636 1.41937 1.10690 1.56891 1.11811 1.19654 0.87322 1.40759 0.98186 0.90147 1.26051 1.03827 0.97010 0.94609 1.69678 1.36055 1.46502 1.04075 0.84922 0.77143 0.78617 0.77637 1.19631 1.19731 1.19707 1.23982 1.01701 0.92824 0.93361 1.22831 0.93089 0.88978 0.90035 0.88465 1.86329 1.38902 1.44822 1.67003 1.84977 1.21641 1.22189 1.67565 1.73751 0.89557 1.25458 1.18681 0.88377 0.87452 0.90047 0.77949 0.74395 0.92324 0.88314 0.91259 0.87359 0.77138 0.91377 0.93126 0.90595 0.74467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.47 71.24 0.75 0.13 16 2 C 0.01 0.20 7.31 43.56 0.32 0.52 16 3 C -0.15 -2.37 10.92 22.68 0.25 -2.12 16 4 C -0.09 -1.86 7.29 24.39 0.18 -1.69 16 5 C 0.61 13.38 7.82 86.69 0.68 14.06 16 6 O -0.54 -14.33 16.59 -3.99 -0.07 -14.39 16 7 N -0.68 -13.65 4.63 -441.55 -2.05 -15.69 16 8 C 0.15 3.09 3.27 45.87 0.15 3.24 16 9 H 0.11 2.34 7.60 -2.39 -0.02 2.33 16 10 C 0.03 0.66 6.46 86.45 0.56 1.22 16 11 N -0.50 -15.31 4.91 -887.01 -4.35 -19.66 16 12 C 0.05 1.67 5.19 85.56 0.44 2.11 16 13 C 0.44 20.70 7.61 87.66 0.67 21.37 16 14 O -0.61 -32.76 14.64 -3.08 -0.05 -32.81 16 15 N -0.58 -29.26 5.29 -306.97 -1.62 -30.88 16 16 C -0.33 -18.53 9.68 84.04 0.81 -17.71 16 17 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 18 C -0.02 -0.82 5.50 84.93 0.47 -0.36 16 19 N -0.92 -49.72 13.05 21.66 0.28 -49.44 16 20 Si 0.99 42.73 29.55 68.60 2.03 44.75 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 22 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 24 C 0.01 0.27 5.67 86.74 0.49 0.76 16 25 C 0.11 2.25 4.36 31.89 0.14 2.39 16 26 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 27 O -0.56 -9.42 12.08 -148.98 -1.80 -11.22 16 28 O 0.11 2.27 11.04 65.89 0.73 3.00 16 29 N -0.37 -7.89 12.04 -48.86 -0.59 -8.48 16 30 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.20 2.36 8.06 -2.91 -0.02 2.34 16 34 H 0.42 7.79 7.64 -92.71 -0.71 7.08 16 35 H 0.06 1.36 7.56 -2.38 -0.02 1.34 16 36 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.07 2.11 7.83 -2.39 -0.02 2.09 16 38 H 0.11 3.30 8.08 -2.39 -0.02 3.28 16 39 H 0.40 19.19 7.90 -92.71 -0.73 18.45 16 40 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 41 H 0.05 1.36 7.81 -2.39 -0.02 1.34 16 42 H 0.08 2.54 7.10 -2.39 -0.02 2.53 16 43 H 0.40 3.96 9.12 -74.05 -0.68 3.29 16 Total: -1.00 -72.66 371.56 -2.60 -75.26 By element: Atomic # 1 Polarization: 36.65 SS G_CDS: -1.02 Total: 35.64 kcal Atomic # 6 Polarization: 18.02 SS G_CDS: 5.90 Total: 23.92 kcal Atomic # 7 Polarization: -115.83 SS G_CDS: -8.33 Total: -124.15 kcal Atomic # 8 Polarization: -54.24 SS G_CDS: -1.18 Total: -55.43 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -72.66 -2.60 -75.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219175495.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.607 kcal (2) G-P(sol) polarization free energy of solvation -72.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds