Wall clock time and date at job start Tue Mar 31 2020 20:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86796 * 120.00091 * 2 1 4 4 H 1.48498 * 109.47224 * 269.99974 * 3 2 1 5 5 H 1.48503 * 109.47011 * 30.00148 * 3 2 1 6 6 H 1.48498 * 109.47134 * 149.99665 * 3 2 1 7 7 C 1.38947 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00109 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00306 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99757 * 179.97438 * 9 7 2 11 11 O 1.21283 * 120.00476 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99685 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47231 * 180.02562 * 12 10 9 14 14 C 1.48717 * 111.01277 * 174.61560 * 13 12 10 15 15 C 1.54382 * 104.51520 * 158.96784 * 14 13 12 16 16 H 1.09010 * 110.32359 * 95.21418 * 15 14 13 17 17 N 1.46499 * 110.32654 * 217.31877 * 15 14 13 18 18 C 1.34777 * 120.00199 * 272.17534 * 17 15 14 19 19 O 1.21283 * 119.99750 * 359.97438 * 18 17 15 20 20 C 1.50702 * 119.99928 * 180.27479 * 18 17 15 21 21 C 1.50700 * 109.46869 * 179.72354 * 20 18 17 22 22 C 1.41376 * 126.80125 * 125.00307 * 21 20 18 23 23 C 1.35446 * 103.98526 * 179.97438 * 22 21 20 24 24 O 1.34039 * 106.45006 * 359.97438 * 23 22 21 25 25 N 1.20930 * 111.56267 * 359.71098 * 24 23 22 26 26 C 1.54254 * 105.14779 * 336.26976 * 15 14 13 27 27 H 1.09001 * 110.32498 * 118.84632 * 26 15 14 28 28 O 1.42902 * 110.32400 * 241.05108 * 26 15 14 29 29 C 1.48552 * 110.99724 * 290.12734 * 13 12 10 30 30 H 0.96999 * 119.99447 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99484 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.46904 * 59.99767 * 12 10 9 33 33 H 1.09007 * 109.47050 * 300.00455 * 12 10 9 34 34 H 1.08996 * 110.39438 * 40.24533 * 14 13 12 35 35 H 1.09004 * 110.50826 * 277.74549 * 14 13 12 36 36 H 0.97000 * 119.99484 * 92.16631 * 17 15 14 37 37 H 1.09004 * 109.46965 * 299.72211 * 20 18 17 38 38 H 1.08994 * 109.46990 * 59.72065 * 20 18 17 39 39 H 1.08000 * 128.01148 * 0.02677 * 22 21 20 40 40 H 1.08001 * 126.77916 * 180.02562 * 23 22 21 41 41 H 0.96699 * 113.99900 * 179.97438 * 28 26 15 42 42 H 1.08993 * 110.41705 * 82.18190 * 29 13 12 43 43 H 1.09005 * 110.51419 * 319.78428 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5579 0.0010 12 6 1.2438 -4.8629 0.0000 13 7 2.1984 -5.9795 0.0007 14 6 1.4943 -7.2830 0.1304 15 6 2.4980 -8.3210 -0.4159 16 1 3.0709 -8.7601 0.4011 17 7 1.7933 -9.3668 -1.1615 18 6 1.3191 -10.4511 -0.5167 19 8 1.4761 -10.5613 0.6809 20 6 0.5996 -11.5298 -1.2847 21 6 0.1801 -12.6253 -0.3387 22 6 -1.1268 -13.1328 -0.1569 23 6 -0.9773 -14.0910 0.7887 24 8 0.3247 -14.1108 1.1064 25 7 0.9505 -13.2966 0.4677 26 6 3.4278 -7.5267 -1.3559 27 1 4.4569 -7.5743 -0.9996 28 8 3.3389 -8.0355 -2.6883 29 6 2.9080 -6.0740 -1.3009 30 1 -0.4849 0.8401 -0.0004 31 1 0.3534 -2.3906 -0.0002 32 1 0.6175 -4.9204 -0.8903 33 1 0.6167 -4.9208 0.8897 34 1 0.5832 -7.2837 -0.4679 35 1 1.2640 -7.4903 1.1755 36 1 1.6680 -9.2787 -2.1193 37 1 -0.2827 -11.1069 -1.7651 38 1 1.2650 -11.9405 -2.0441 39 1 -2.0343 -12.8278 -0.6569 40 1 -1.7538 -14.7163 1.2041 41 1 3.9024 -7.5737 -3.3241 42 1 3.7404 -5.3710 -1.3321 43 1 2.2206 -5.8848 -2.1254 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219411671.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:39 Heat of formation + Delta-G solvation = -36.612527 kcal Electronic energy + Delta-G solvation = -28613.830034 eV Core-core repulsion = 24277.218178 eV Total energy + Delta-G solvation = -4336.611856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.17456 -40.34676 -39.00925 -37.87592 -35.83827 -34.92789 -34.34830 -33.82808 -32.01552 -31.32913 -30.74534 -29.40696 -27.89822 -26.39999 -24.28381 -23.42178 -22.40976 -21.53226 -20.73441 -20.44861 -19.21899 -18.09553 -18.02335 -17.89858 -17.60566 -17.06788 -16.12211 -16.09388 -15.70510 -15.16771 -15.12991 -14.90767 -14.63850 -14.23071 -13.98171 -13.76583 -13.56431 -13.44817 -13.21856 -13.07673 -12.88001 -12.64882 -12.13117 -12.04431 -11.56247 -11.53377 -11.45954 -11.35549 -11.11308 -10.88637 -10.51101 -10.41148 -10.24542 -10.12508 -9.99517 -9.86761 -9.52017 -9.19967 -8.59092 -8.09921 -7.97971 -6.44014 -3.84958 1.28230 1.91216 2.45571 2.87541 3.03835 3.15764 3.24769 3.30751 3.79483 3.82127 3.87354 4.09515 4.23750 4.28937 4.53510 4.57512 4.66194 4.81379 4.88006 4.95792 5.05314 5.11662 5.16258 5.21730 5.25702 5.37796 5.41456 5.62265 5.68381 5.73490 5.80902 5.91569 5.95883 6.18847 6.21895 6.28999 6.94213 7.07107 7.36057 7.42018 7.52880 8.03307 8.05300 8.08928 8.58852 9.15507 9.51522 10.03019 10.73715 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024886 B = 0.001930 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.867464 B =14501.837074 C =15132.652818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.445 3.555 11 O -0.579 6.579 12 C 0.036 3.964 13 N -0.478 5.478 14 C 0.020 3.980 15 C 0.153 3.847 16 H 0.105 0.895 17 N -0.709 5.709 18 C 0.513 3.487 19 O -0.527 6.527 20 C -0.061 4.061 21 C 0.023 3.977 22 C -0.229 4.229 23 C -0.063 4.063 24 O 0.104 5.896 25 N -0.336 5.336 26 C 0.094 3.906 27 H 0.079 0.921 28 O -0.568 6.568 29 C 0.006 3.994 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.410 0.590 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.172 0.828 40 H 0.216 0.784 41 H 0.387 0.613 42 H 0.106 0.894 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.496 -25.207 -6.366 26.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.230 3.770 11 O -0.463 6.463 12 C -0.096 4.096 13 N -0.203 5.203 14 C -0.109 4.109 15 C 0.047 3.953 16 H 0.123 0.877 17 N -0.363 5.363 18 C 0.298 3.702 19 O -0.402 6.402 20 C -0.102 4.102 21 C -0.137 4.137 22 C -0.251 4.251 23 C -0.145 4.145 24 O 0.034 5.966 25 N -0.037 5.037 26 C 0.034 3.966 27 H 0.097 0.903 28 O -0.374 6.374 29 C -0.122 4.122 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.069 0.931 33 H 0.110 0.890 34 H 0.067 0.933 35 H 0.108 0.892 36 H 0.247 0.753 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.189 0.811 40 H 0.232 0.768 41 H 0.236 0.764 42 H 0.124 0.876 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.416 -25.379 -4.511 25.890 hybrid contribution -1.588 1.495 -1.680 2.753 sum -4.004 -23.884 -6.192 24.996 Atomic orbital electron populations 1.69616 1.05939 1.28172 1.50573 1.25272 0.95651 0.99750 0.97331 0.85848 0.79263 0.80784 0.78341 1.20449 1.20908 1.19393 1.19693 0.93349 0.82168 1.47606 0.87901 1.41857 1.09193 1.04572 1.64444 1.19650 0.88367 0.84437 0.84550 1.90494 1.13631 1.86957 1.55186 1.22073 0.94145 0.91510 1.01854 1.65128 1.23868 1.00510 1.30804 1.23634 0.95692 0.89382 1.02190 1.21733 0.92448 0.87115 0.94025 0.87690 1.45716 1.57804 1.20224 1.12562 1.20323 0.79261 0.82473 0.88184 1.90768 1.56787 1.77993 1.14664 1.19966 1.02492 0.91394 0.96329 1.22863 0.90846 1.00074 0.99886 1.22693 0.98701 1.00483 1.03189 1.26004 0.87570 1.01787 0.99106 1.84886 1.17926 1.44423 1.49319 1.73905 1.20602 1.02570 1.06599 1.22858 0.99091 0.92225 0.82417 0.90284 1.86222 1.70297 1.62035 1.18874 1.23916 1.00670 0.96552 0.91089 0.91862 0.77493 0.93139 0.89041 0.93322 0.89179 0.75323 0.86595 0.86893 0.81080 0.76768 0.76441 0.87625 0.93189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.41 13.05 55.50 0.72 -23.68 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 8 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 9 N -0.56 -14.19 5.29 -10.96 -0.06 -14.25 16 10 C 0.44 10.39 7.58 -10.98 -0.08 10.31 16 11 O -0.58 -15.34 14.42 5.55 0.08 -15.26 16 12 C 0.04 0.64 5.30 -4.97 -0.03 0.62 16 13 N -0.48 -7.93 5.06 -231.27 -1.17 -9.10 16 14 C 0.02 0.28 6.22 -2.09 -0.01 0.27 16 15 C 0.15 1.92 3.38 -66.55 -0.22 1.69 16 16 H 0.11 1.48 7.60 -51.92 -0.39 1.09 16 17 N -0.71 -7.49 4.88 -52.46 -0.26 -7.74 16 18 C 0.51 6.06 7.82 -10.98 -0.09 5.97 16 19 O -0.53 -8.59 15.28 5.55 0.08 -8.51 16 20 C -0.06 -0.49 6.30 -29.03 -0.18 -0.68 16 21 C 0.02 0.23 6.09 -82.10 -0.50 -0.27 16 22 C -0.23 -1.65 11.12 -39.39 -0.44 -2.09 16 23 C -0.06 -0.41 12.30 29.74 0.37 -0.05 16 24 O 0.10 1.08 11.20 17.18 0.19 1.27 16 25 N -0.34 -4.26 11.48 33.42 0.38 -3.88 16 26 C 0.09 1.10 4.42 -25.35 -0.11 0.98 16 27 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 28 O -0.57 -5.19 11.51 -35.23 -0.41 -5.60 16 29 C 0.01 0.09 5.54 -2.18 -0.01 0.08 16 30 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 32 H 0.05 0.82 7.89 -51.93 -0.41 0.41 16 33 H 0.09 1.52 8.13 -51.93 -0.42 1.09 16 34 H 0.05 0.63 7.91 -51.93 -0.41 0.22 16 35 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.41 3.56 7.22 -40.82 -0.29 3.27 16 37 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.22 0.37 8.06 -52.49 -0.42 -0.05 16 41 H 0.39 2.23 9.12 45.56 0.42 2.64 16 42 H 0.11 1.83 6.91 -51.93 -0.36 1.47 16 43 H 0.05 0.72 7.77 -51.93 -0.40 0.31 16 LS Contribution 368.87 15.07 5.56 5.56 Total: -1.00 -36.69 368.87 -6.09 -42.78 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -4.65 Total: 13.59 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: -1.55 Total: 8.92 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -0.38 Total: -58.66 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.05 Total: -28.09 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.69 -6.09 -42.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219411671.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.163 kcal (2) G-P(sol) polarization free energy of solvation -36.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds