Wall clock time and date at job start Tue Mar 31 2020 20:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86796 * 120.00091 * 2 1 4 4 H 1.48498 * 109.47224 * 269.99974 * 3 2 1 5 5 H 1.48503 * 109.47011 * 30.00148 * 3 2 1 6 6 H 1.48498 * 109.47134 * 149.99665 * 3 2 1 7 7 C 1.38947 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00109 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00306 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99757 * 179.97438 * 9 7 2 11 11 O 1.21283 * 120.00476 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99685 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47231 * 180.02562 * 12 10 9 14 14 C 1.48717 * 111.01277 * 174.61560 * 13 12 10 15 15 C 1.54382 * 104.51520 * 158.96784 * 14 13 12 16 16 H 1.09010 * 110.32359 * 95.21418 * 15 14 13 17 17 N 1.46499 * 110.32654 * 217.31877 * 15 14 13 18 18 C 1.34777 * 120.00199 * 272.17534 * 17 15 14 19 19 O 1.21283 * 119.99750 * 359.97438 * 18 17 15 20 20 C 1.50702 * 119.99928 * 180.27479 * 18 17 15 21 21 C 1.50700 * 109.46869 * 179.72354 * 20 18 17 22 22 C 1.41376 * 126.80125 * 125.00307 * 21 20 18 23 23 C 1.35446 * 103.98526 * 179.97438 * 22 21 20 24 24 O 1.34039 * 106.45006 * 359.97438 * 23 22 21 25 25 N 1.20930 * 111.56267 * 359.71098 * 24 23 22 26 26 C 1.54254 * 105.14779 * 336.26976 * 15 14 13 27 27 H 1.09001 * 110.32498 * 118.84632 * 26 15 14 28 28 O 1.42902 * 110.32400 * 241.05108 * 26 15 14 29 29 C 1.48552 * 110.99724 * 290.12734 * 13 12 10 30 30 H 0.96999 * 119.99447 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99484 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.46904 * 59.99767 * 12 10 9 33 33 H 1.09007 * 109.47050 * 300.00455 * 12 10 9 34 34 H 1.08996 * 110.39438 * 40.24533 * 14 13 12 35 35 H 1.09004 * 110.50826 * 277.74549 * 14 13 12 36 36 H 0.97000 * 119.99484 * 92.16631 * 17 15 14 37 37 H 1.09004 * 109.46965 * 299.72211 * 20 18 17 38 38 H 1.08994 * 109.46990 * 59.72065 * 20 18 17 39 39 H 1.08000 * 128.01148 * 0.02677 * 22 21 20 40 40 H 1.08001 * 126.77916 * 180.02562 * 23 22 21 41 41 H 0.96699 * 113.99900 * 179.97438 * 28 26 15 42 42 H 1.08993 * 110.41705 * 82.18190 * 29 13 12 43 43 H 1.09005 * 110.51419 * 319.78428 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5579 0.0010 12 6 1.2438 -4.8629 0.0000 13 7 2.1984 -5.9795 0.0007 14 6 1.4943 -7.2830 0.1304 15 6 2.4980 -8.3210 -0.4159 16 1 3.0709 -8.7601 0.4011 17 7 1.7933 -9.3668 -1.1615 18 6 1.3191 -10.4511 -0.5167 19 8 1.4761 -10.5613 0.6809 20 6 0.5996 -11.5298 -1.2847 21 6 0.1801 -12.6253 -0.3387 22 6 -1.1268 -13.1328 -0.1569 23 6 -0.9773 -14.0910 0.7887 24 8 0.3247 -14.1108 1.1064 25 7 0.9505 -13.2966 0.4677 26 6 3.4278 -7.5267 -1.3559 27 1 4.4569 -7.5743 -0.9996 28 8 3.3389 -8.0355 -2.6883 29 6 2.9080 -6.0740 -1.3009 30 1 -0.4849 0.8401 -0.0004 31 1 0.3534 -2.3906 -0.0002 32 1 0.6175 -4.9204 -0.8903 33 1 0.6167 -4.9208 0.8897 34 1 0.5832 -7.2837 -0.4679 35 1 1.2640 -7.4903 1.1755 36 1 1.6680 -9.2787 -2.1193 37 1 -0.2827 -11.1069 -1.7651 38 1 1.2650 -11.9405 -2.0441 39 1 -2.0343 -12.8278 -0.6569 40 1 -1.7538 -14.7163 1.2041 41 1 3.9024 -7.5737 -3.3241 42 1 3.7404 -5.3710 -1.3321 43 1 2.2206 -5.8848 -2.1254 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219411671.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:38 Heat of formation + Delta-G solvation = -69.533353 kcal Electronic energy + Delta-G solvation = -28615.257588 eV Core-core repulsion = 24277.218178 eV Total energy + Delta-G solvation = -4338.039411 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.82722 -41.38587 -40.34251 -39.37431 -36.89322 -35.94286 -35.57662 -35.25033 -33.30610 -32.60773 -31.85059 -30.33288 -28.98108 -27.91743 -26.01519 -24.03942 -23.24377 -22.73313 -21.65880 -21.30181 -21.00473 -19.89531 -18.83850 -18.70042 -18.42317 -17.93622 -17.80190 -17.04796 -16.64677 -16.60614 -16.32560 -16.12449 -15.89716 -15.71108 -15.19316 -14.99970 -14.79093 -14.28152 -14.19262 -14.08932 -13.87477 -13.73426 -13.46771 -13.40654 -13.11938 -12.96769 -12.58793 -12.56462 -12.42270 -12.17675 -12.13834 -12.04672 -11.49166 -11.24161 -11.06202 -10.83189 -10.48376 -10.38540 -10.15067 -10.02155 -9.48799 -8.47420 -5.96094 0.72543 1.30351 1.37211 1.41357 1.53981 1.58083 2.01453 2.03579 2.28574 2.56203 2.77234 3.10861 3.18681 3.22273 3.30002 3.45722 3.68764 3.73280 3.93321 4.02389 4.16336 4.24575 4.26186 4.33460 4.39693 4.44038 4.47901 4.48500 4.60970 4.67431 4.81856 4.87307 4.90581 4.97686 5.22867 5.33052 5.40279 5.72481 5.77408 6.02526 6.54906 6.58967 6.74624 7.11742 7.25558 7.45509 7.54608 8.09959 8.69999 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024886 B = 0.001930 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.867464 B =14501.837074 C =15132.652818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.993 3.007 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.331 4.331 8 H 0.080 0.920 9 N -0.574 5.574 10 C 0.443 3.557 11 O -0.614 6.614 12 C 0.048 3.952 13 N -0.503 5.503 14 C 0.029 3.971 15 C 0.155 3.845 16 H 0.086 0.914 17 N -0.695 5.695 18 C 0.510 3.490 19 O -0.578 6.578 20 C -0.056 4.056 21 C 0.004 3.996 22 C -0.234 4.234 23 C -0.055 4.055 24 O 0.082 5.918 25 N -0.389 5.389 26 C 0.113 3.887 27 H 0.080 0.920 28 O -0.561 6.561 29 C 0.010 3.990 30 H 0.277 0.723 31 H 0.396 0.604 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.422 0.578 37 H 0.154 0.846 38 H 0.133 0.867 39 H 0.203 0.797 40 H 0.260 0.740 41 H 0.404 0.596 42 H 0.075 0.925 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.213 -26.051 -7.903 27.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.817 3.183 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.461 4.461 8 H 0.098 0.902 9 N -0.211 5.211 10 C 0.230 3.770 11 O -0.500 6.500 12 C -0.083 4.083 13 N -0.228 5.228 14 C -0.100 4.100 15 C 0.048 3.952 16 H 0.104 0.896 17 N -0.349 5.349 18 C 0.297 3.703 19 O -0.457 6.457 20 C -0.095 4.095 21 C -0.155 4.155 22 C -0.256 4.256 23 C -0.136 4.136 24 O 0.015 5.985 25 N -0.093 5.093 26 C 0.052 3.948 27 H 0.098 0.902 28 O -0.370 6.370 29 C -0.119 4.119 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.092 0.908 33 H 0.124 0.876 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.261 0.739 37 H 0.172 0.828 38 H 0.151 0.849 39 H 0.220 0.780 40 H 0.275 0.725 41 H 0.256 0.744 42 H 0.093 0.907 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.155 -26.246 -6.095 27.263 hybrid contribution -1.074 1.690 -1.215 2.342 sum -5.229 -24.556 -7.310 26.150 Atomic orbital electron populations 1.69677 1.06821 1.29283 1.50369 1.26049 0.96564 1.02434 0.96341 0.84920 0.77835 0.76866 0.78674 1.19491 1.19652 1.19872 1.19653 0.92693 0.83899 1.49837 0.90231 1.41920 1.09307 1.04675 1.65210 1.20615 0.88260 0.85736 0.82362 1.90472 1.15538 1.87793 1.56182 1.21921 0.93841 0.88897 1.03652 1.65025 1.24360 1.01220 1.32215 1.23555 0.96310 0.88096 1.02029 1.21505 0.92316 0.87314 0.94041 0.89604 1.45600 1.57004 1.19409 1.12931 1.21017 0.78595 0.82956 0.87781 1.90753 1.58783 1.79039 1.17092 1.20114 1.03962 0.89693 0.95773 1.23441 0.92089 1.00245 0.99715 1.23139 0.98605 1.00335 1.03484 1.26919 0.86785 1.01613 0.98246 1.84813 1.19677 1.44392 1.49587 1.73903 1.22567 1.04331 1.08509 1.22505 0.98647 0.89978 0.83626 0.90161 1.86189 1.70916 1.61888 1.17971 1.23831 0.99651 0.97854 0.90521 0.91312 0.77048 0.90761 0.87559 0.91804 0.90191 0.73851 0.82813 0.84916 0.77954 0.72469 0.74372 0.90700 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.48 13.05 21.66 0.28 -49.19 16 2 C -0.01 -0.76 5.50 84.92 0.47 -0.29 16 3 Si 0.99 42.76 29.55 68.60 2.03 44.78 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 7 C -0.33 -18.71 9.68 84.04 0.81 -17.90 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.57 -29.32 5.29 -306.99 -1.62 -30.95 16 10 C 0.44 21.00 7.58 87.66 0.66 21.66 16 11 O -0.61 -33.49 14.42 -3.04 -0.04 -33.54 16 12 C 0.05 1.69 5.30 85.56 0.45 2.15 16 13 N -0.50 -16.46 5.06 -885.60 -4.48 -20.95 16 14 C 0.03 0.77 6.22 86.42 0.54 1.31 16 15 C 0.15 3.77 3.38 45.89 0.16 3.92 16 16 H 0.09 2.47 7.60 -2.38 -0.02 2.45 16 17 N -0.70 -13.40 4.88 -438.29 -2.14 -15.54 16 18 C 0.51 11.43 7.82 87.66 0.69 12.11 16 19 O -0.58 -19.05 15.28 -3.04 -0.05 -19.10 16 20 C -0.06 -0.76 6.30 29.10 0.18 -0.58 16 21 C 0.00 0.08 6.09 43.58 0.27 0.35 16 22 C -0.23 -2.80 11.12 22.40 0.25 -2.55 16 23 C -0.06 -0.60 12.30 67.17 0.83 0.22 16 24 O 0.08 1.69 11.20 71.64 0.80 2.50 16 25 N -0.39 -9.95 11.48 -49.56 -0.57 -10.51 16 26 C 0.11 2.50 4.42 31.49 0.14 2.64 16 27 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 28 O -0.56 -8.86 11.51 -148.98 -1.71 -10.58 16 29 C 0.01 0.29 5.54 86.45 0.48 0.77 16 30 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 31 H 0.40 19.24 7.90 -92.71 -0.73 18.50 16 32 H 0.07 2.26 7.89 -2.39 -0.02 2.24 16 33 H 0.11 3.40 8.13 -2.38 -0.02 3.38 16 34 H 0.06 1.51 7.91 -2.39 -0.02 1.49 16 35 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 36 H 0.42 6.08 7.22 -92.71 -0.67 5.41 16 37 H 0.15 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.20 0.90 8.06 -2.91 -0.02 0.88 16 40 H 0.26 0.03 8.06 -2.91 -0.02 0.00 16 41 H 0.40 3.60 9.12 -74.06 -0.68 2.92 16 42 H 0.07 2.65 6.91 -2.39 -0.02 2.63 16 43 H 0.06 1.55 7.77 -2.38 -0.02 1.53 16 Total: -1.00 -83.20 368.87 -2.57 -85.76 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: -0.98 Total: 33.51 kcal Atomic # 6 Polarization: 17.89 SS G_CDS: 5.92 Total: 23.81 kcal Atomic # 7 Polarization: -118.61 SS G_CDS: -8.53 Total: -127.14 kcal Atomic # 8 Polarization: -59.72 SS G_CDS: -1.00 Total: -60.72 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -83.20 -2.57 -85.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219411671.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.229 kcal (2) G-P(sol) polarization free energy of solvation -83.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds