Wall clock time and date at job start Tue Mar 31 2020 22:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33697 * 126.27905 * 2 1 4 4 C 1.30615 * 108.99849 * 180.02562 * 3 2 1 5 5 O 1.33657 * 109.15352 * 359.73356 * 4 3 2 6 6 C 1.35348 * 107.68835 * 0.43023 * 5 4 3 7 7 C 1.46715 * 126.64715 * 179.83952 * 6 5 4 8 8 O 1.21691 * 120.00115 * 179.68924 * 7 6 5 9 9 N 1.34775 * 119.99969 * 359.68899 * 7 6 5 10 10 C 1.46503 * 119.99924 * 180.02562 * 9 7 6 11 11 H 1.08996 * 110.64763 * 31.84673 * 10 9 7 12 12 C 1.54933 * 110.87536 * 268.58650 * 10 9 7 13 13 N 1.48814 * 103.35067 * 204.26163 * 12 10 9 14 14 C 1.46898 * 111.18587 * 159.50839 * 13 12 10 15 15 C 1.50703 * 109.47507 * 59.27312 * 14 13 12 16 16 O 1.21296 * 119.99416 * 6.14071 * 15 14 13 17 17 N 1.34774 * 120.00292 * 186.13610 * 15 14 13 18 18 C 1.37094 * 119.99583 * 180.02562 * 17 15 14 19 19 H 1.07999 * 120.00525 * 0.02562 * 18 17 15 20 20 C 1.38960 * 119.99524 * 180.02562 * 18 17 15 21 21 N 1.31412 * 119.99916 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99922 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47258 * 59.99878 * 22 20 18 24 24 H 1.48500 * 109.47258 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47123 * 300.00291 * 22 20 18 26 26 C 1.47898 * 105.67397 * 38.97830 * 13 12 10 27 27 C 1.53990 * 107.22942 * 334.90615 * 26 13 12 28 28 H 1.09003 * 110.30484 * 242.21170 * 27 26 13 29 29 O 1.42894 * 110.31116 * 120.04344 * 27 26 13 30 30 H 1.08999 * 109.47000 * 269.95994 * 1 2 3 31 31 H 1.09008 * 109.46961 * 29.95459 * 1 2 3 32 32 H 1.08999 * 109.47171 * 149.95193 * 1 2 3 33 33 H 1.08005 * 125.41793 * 180.02562 * 4 3 2 34 34 H 0.97003 * 120.00241 * 0.02562 * 9 7 6 35 35 H 1.09000 * 110.67099 * 322.59289 * 12 10 9 36 36 H 1.08999 * 110.66718 * 85.55394 * 12 10 9 37 37 H 1.08996 * 109.47159 * 179.28065 * 14 13 12 38 38 H 1.09002 * 109.46850 * 299.27697 * 14 13 12 39 39 H 0.97003 * 119.99922 * 0.02562 * 17 15 14 40 40 H 0.96997 * 119.99530 * 180.02562 * 21 20 18 41 41 H 1.09003 * 109.91291 * 215.44910 * 26 13 12 42 42 H 1.08997 * 109.91654 * 94.36280 * 26 13 12 43 43 H 0.96703 * 114.00105 * 61.45759 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2981 1.0778 0.0000 4 6 3.5453 0.6898 -0.0006 5 8 3.5889 -0.6461 0.0049 6 6 2.3136 -1.0993 -0.0006 7 6 1.8826 -2.5017 -0.0009 8 8 0.6965 -2.7737 -0.0005 9 7 2.8003 -3.4887 -0.0015 10 6 2.3699 -4.8891 -0.0024 11 1 1.4288 -5.0016 -0.5406 12 6 2.2419 -5.4282 1.4445 13 7 2.4085 -6.8977 1.2797 14 6 2.7984 -7.5331 2.5455 15 6 1.7419 -7.2682 3.5870 16 8 0.7101 -6.7113 3.2761 17 7 1.9434 -7.6500 4.8637 18 6 0.9819 -7.4094 5.8109 19 1 0.0629 -6.9143 5.5340 20 6 1.1899 -7.8026 7.1274 21 7 2.3084 -8.4046 7.4644 22 14 -0.1203 -7.4755 8.4179 23 1 -1.3780 -8.1644 8.0321 24 1 0.3417 -7.9873 9.7332 25 1 -0.3660 -6.0141 8.5145 26 6 3.4612 -7.0680 0.2548 27 6 3.4618 -5.7966 -0.6140 28 1 3.2138 -6.0437 -1.6463 29 8 4.7357 -5.1524 -0.5494 30 1 -0.3633 -0.0007 1.0277 31 1 -0.3633 0.8905 -0.5132 32 1 -0.3633 -0.8895 -0.5146 33 1 4.4044 1.3443 -0.0003 34 1 3.7458 -3.2719 -0.0014 35 1 3.0313 -5.0227 2.0774 36 1 1.2608 -5.1930 1.8573 37 1 2.9001 -8.6080 2.3962 38 1 3.7503 -7.1211 2.8807 39 1 2.7687 -8.0950 5.1123 40 1 2.4534 -8.6794 8.3832 41 1 3.2412 -7.9393 -0.3621 42 1 4.4316 -7.1895 0.7359 43 1 5.4668 -5.6924 -0.8796 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219418355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:33 Heat of formation + Delta-G solvation = -75.931322 kcal Electronic energy + Delta-G solvation = -29358.965995 eV Core-core repulsion = 25020.649148 eV Total energy + Delta-G solvation = -4338.316847 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.68386 -40.26772 -38.96127 -37.91017 -35.76641 -35.67353 -34.36495 -33.84201 -31.91506 -31.29386 -30.38504 -28.55503 -27.64792 -26.44059 -24.43356 -23.90631 -22.22181 -21.45419 -20.92913 -20.62818 -19.21619 -18.60045 -17.92854 -17.60597 -17.12907 -16.78155 -16.32224 -15.83628 -15.53589 -15.06395 -14.85978 -14.81631 -14.55533 -14.27394 -14.02430 -13.85461 -13.43160 -13.35430 -13.21214 -13.13258 -12.84250 -12.37776 -12.06201 -11.91414 -11.67042 -11.51444 -11.39985 -11.32537 -11.14451 -11.11291 -10.83271 -10.44479 -10.38133 -10.29657 -10.20879 -9.49123 -9.34375 -9.02429 -8.49172 -8.08763 -7.94818 -6.42214 -3.82866 0.59457 2.17172 2.20387 2.87875 2.93903 3.20623 3.26157 3.31015 3.74269 3.85184 3.88760 4.00814 4.25593 4.42828 4.49409 4.60696 4.62642 4.84192 5.05241 5.17455 5.23468 5.24085 5.28406 5.38249 5.53049 5.57164 5.64086 5.65822 5.72420 5.78241 5.83273 5.98478 6.11087 6.22929 6.23859 6.49462 6.99798 7.09652 7.17164 7.27210 7.41310 7.55133 7.94354 8.05252 8.60781 9.17586 9.52957 10.04777 10.75490 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010948 B = 0.002900 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.940021 B = 9652.641006 C =11271.286259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.080 3.920 3 N -0.494 5.494 4 C 0.200 3.800 5 O -0.191 6.191 6 C -0.112 4.112 7 C 0.606 3.394 8 O -0.506 6.506 9 N -0.698 5.698 10 C 0.149 3.851 11 H 0.117 0.883 12 C 0.032 3.968 13 N -0.486 5.486 14 C 0.039 3.961 15 C 0.441 3.559 16 O -0.575 6.575 17 N -0.563 5.563 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.903 5.903 22 Si 0.931 3.069 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.001 3.999 27 C 0.088 3.912 28 H 0.076 0.924 29 O -0.566 6.566 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.256 0.744 34 H 0.414 0.586 35 H 0.044 0.956 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.049 0.951 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.088 0.912 42 H 0.057 0.943 43 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.193 10.707 -18.098 22.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.044 4.044 3 N -0.223 5.223 4 C -0.025 4.025 5 O -0.076 6.076 6 C -0.167 4.167 7 C 0.391 3.609 8 O -0.383 6.383 9 N -0.350 5.350 10 C 0.043 3.957 11 H 0.135 0.865 12 C -0.096 4.096 13 N -0.211 5.211 14 C -0.093 4.093 15 C 0.226 3.774 16 O -0.459 6.459 17 N -0.199 5.199 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.758 3.242 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.128 4.128 27 C 0.028 3.972 28 H 0.094 0.906 29 O -0.372 6.372 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.272 0.728 34 H 0.251 0.749 35 H 0.063 0.937 36 H 0.134 0.866 37 H 0.111 0.889 38 H 0.067 0.933 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.106 0.894 42 H 0.075 0.925 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 6.743 11.593 -18.013 22.458 hybrid contribution 2.119 -0.819 1.063 2.508 sum 8.862 10.774 -16.950 21.953 Atomic orbital electron populations 1.20427 0.85152 1.04366 1.04074 1.22102 0.98498 0.86266 0.97505 1.70358 1.01344 1.31476 1.19168 1.28327 0.97647 0.79458 0.97102 1.84498 1.29666 1.24415 1.69063 1.22935 0.81397 0.96268 1.16111 1.16338 0.85889 0.81394 0.77242 1.90910 1.15572 1.81656 1.50184 1.45562 1.10397 1.05287 1.73764 1.22125 0.97186 0.78645 0.97739 0.86488 1.23776 1.04519 0.86933 0.94391 1.64601 1.38794 1.10795 1.06909 1.22100 0.96854 1.00556 0.89804 1.19671 0.88997 0.85450 0.83308 1.90518 1.28739 1.46374 1.80278 1.41842 1.19261 1.52467 1.06363 1.19665 0.99331 1.36229 0.87631 0.87904 1.25260 0.97585 0.96801 0.98242 1.69604 1.24729 1.40204 1.19866 0.85918 0.80369 0.78913 0.79043 1.19818 1.20980 1.19891 1.23724 0.95393 0.98189 0.95495 1.22948 0.83743 0.91790 0.98698 0.90586 1.86323 1.16930 1.45962 1.87996 0.89703 0.90497 0.88491 0.72814 0.74933 0.93745 0.86583 0.88903 0.93330 0.77521 0.91823 0.89416 0.92492 0.76687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 9.87 36.00 0.36 -0.58 16 2 C 0.08 1.01 7.16 -82.46 -0.59 0.42 16 3 N -0.49 -5.67 11.26 -10.88 -0.12 -5.80 16 4 C 0.20 1.66 13.21 52.24 0.69 2.35 16 5 O -0.19 -2.01 10.57 4.43 0.05 -1.96 16 6 C -0.11 -1.44 7.18 -36.84 -0.26 -1.71 16 7 C 0.61 8.71 7.79 -12.84 -0.10 8.61 16 8 O -0.51 -8.56 14.44 5.20 0.08 -8.49 16 9 N -0.70 -8.95 5.11 -53.30 -0.27 -9.22 16 10 C 0.15 2.00 3.38 -66.07 -0.22 1.78 16 11 H 0.12 1.68 7.55 -51.93 -0.39 1.29 16 12 C 0.03 0.55 5.29 -1.74 -0.01 0.54 16 13 N -0.49 -7.93 5.11 -231.65 -1.18 -9.11 16 14 C 0.04 0.68 5.31 -4.98 -0.03 0.66 16 15 C 0.44 10.44 7.42 -10.99 -0.08 10.36 16 16 O -0.58 -15.62 13.89 5.54 0.08 -15.55 16 17 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 18 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 19 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 20 C 0.02 0.61 5.50 -17.46 -0.10 0.52 16 21 N -0.90 -24.64 13.05 55.50 0.72 -23.91 16 22 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 C 0.00 0.01 6.50 -2.76 -0.02 -0.01 16 27 C 0.09 0.88 4.30 -25.38 -0.11 0.77 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 O -0.57 -4.83 11.64 -35.23 -0.41 -5.24 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 0.73 8.14 -51.92 -0.42 0.30 16 32 H 0.10 1.16 6.47 -51.93 -0.34 0.83 16 33 H 0.26 0.64 8.06 -52.48 -0.42 0.22 16 34 H 0.41 4.79 7.04 -40.82 -0.29 4.50 16 35 H 0.04 0.78 8.01 -51.93 -0.42 0.37 16 36 H 0.12 2.48 6.47 -51.93 -0.34 2.15 16 37 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.05 0.79 7.99 -51.93 -0.41 0.38 16 39 H 0.39 9.51 7.90 -40.82 -0.32 9.18 16 40 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.59 7.50 -51.93 -0.39 0.20 16 43 H 0.38 1.62 9.11 45.56 0.41 2.03 16 LS Contribution 366.06 15.07 5.52 5.52 Total: -1.00 -35.50 366.06 -5.77 -41.28 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -4.53 Total: 15.44 kcal Atomic # 6 Polarization: 15.79 SS G_CDS: -0.62 Total: 15.18 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: -0.91 Total: -62.42 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.21 Total: -31.24 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.50 -5.77 -41.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219418355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.654 kcal (2) G-P(sol) polarization free energy of solvation -35.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds