Wall clock time and date at job start Tue Mar 31 2020 22:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33697 * 126.27905 * 2 1 4 4 C 1.30615 * 108.99849 * 180.02562 * 3 2 1 5 5 O 1.33657 * 109.15352 * 359.73356 * 4 3 2 6 6 C 1.35348 * 107.68835 * 0.43023 * 5 4 3 7 7 C 1.46715 * 126.64715 * 179.83952 * 6 5 4 8 8 O 1.21691 * 120.00115 * 179.68924 * 7 6 5 9 9 N 1.34775 * 119.99969 * 359.68899 * 7 6 5 10 10 C 1.46503 * 119.99924 * 180.02562 * 9 7 6 11 11 H 1.08996 * 110.64763 * 31.84673 * 10 9 7 12 12 C 1.54933 * 110.87536 * 268.58650 * 10 9 7 13 13 N 1.48814 * 103.35067 * 204.26163 * 12 10 9 14 14 C 1.46898 * 111.18587 * 159.50839 * 13 12 10 15 15 C 1.50703 * 109.47507 * 59.27312 * 14 13 12 16 16 O 1.21296 * 119.99416 * 6.14071 * 15 14 13 17 17 N 1.34774 * 120.00292 * 186.13610 * 15 14 13 18 18 C 1.37094 * 119.99583 * 180.02562 * 17 15 14 19 19 H 1.07999 * 120.00525 * 0.02562 * 18 17 15 20 20 C 1.38960 * 119.99524 * 180.02562 * 18 17 15 21 21 N 1.31412 * 119.99916 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99922 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47258 * 59.99878 * 22 20 18 24 24 H 1.48500 * 109.47258 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47123 * 300.00291 * 22 20 18 26 26 C 1.47898 * 105.67397 * 38.97830 * 13 12 10 27 27 C 1.53990 * 107.22942 * 334.90615 * 26 13 12 28 28 H 1.09003 * 110.30484 * 242.21170 * 27 26 13 29 29 O 1.42894 * 110.31116 * 120.04344 * 27 26 13 30 30 H 1.08999 * 109.47000 * 269.95994 * 1 2 3 31 31 H 1.09008 * 109.46961 * 29.95459 * 1 2 3 32 32 H 1.08999 * 109.47171 * 149.95193 * 1 2 3 33 33 H 1.08005 * 125.41793 * 180.02562 * 4 3 2 34 34 H 0.97003 * 120.00241 * 0.02562 * 9 7 6 35 35 H 1.09000 * 110.67099 * 322.59289 * 12 10 9 36 36 H 1.08999 * 110.66718 * 85.55394 * 12 10 9 37 37 H 1.08996 * 109.47159 * 179.28065 * 14 13 12 38 38 H 1.09002 * 109.46850 * 299.27697 * 14 13 12 39 39 H 0.97003 * 119.99922 * 0.02562 * 17 15 14 40 40 H 0.96997 * 119.99530 * 180.02562 * 21 20 18 41 41 H 1.09003 * 109.91291 * 215.44910 * 26 13 12 42 42 H 1.08997 * 109.91654 * 94.36280 * 26 13 12 43 43 H 0.96703 * 114.00105 * 61.45759 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2981 1.0778 0.0000 4 6 3.5453 0.6898 -0.0006 5 8 3.5889 -0.6461 0.0049 6 6 2.3136 -1.0993 -0.0006 7 6 1.8826 -2.5017 -0.0009 8 8 0.6965 -2.7737 -0.0005 9 7 2.8003 -3.4887 -0.0015 10 6 2.3699 -4.8891 -0.0024 11 1 1.4288 -5.0016 -0.5406 12 6 2.2419 -5.4282 1.4445 13 7 2.4085 -6.8977 1.2797 14 6 2.7984 -7.5331 2.5455 15 6 1.7419 -7.2682 3.5870 16 8 0.7101 -6.7113 3.2761 17 7 1.9434 -7.6500 4.8637 18 6 0.9819 -7.4094 5.8109 19 1 0.0629 -6.9143 5.5340 20 6 1.1899 -7.8026 7.1274 21 7 2.3084 -8.4046 7.4644 22 14 -0.1203 -7.4755 8.4179 23 1 -1.3780 -8.1644 8.0321 24 1 0.3417 -7.9873 9.7332 25 1 -0.3660 -6.0141 8.5145 26 6 3.4612 -7.0680 0.2548 27 6 3.4618 -5.7966 -0.6140 28 1 3.2138 -6.0437 -1.6463 29 8 4.7357 -5.1524 -0.5494 30 1 -0.3633 -0.0007 1.0277 31 1 -0.3633 0.8905 -0.5132 32 1 -0.3633 -0.8895 -0.5146 33 1 4.4044 1.3443 -0.0003 34 1 3.7458 -3.2719 -0.0014 35 1 3.0313 -5.0227 2.0774 36 1 1.2608 -5.1930 1.8573 37 1 2.9001 -8.6080 2.3962 38 1 3.7503 -7.1211 2.8807 39 1 2.7687 -8.0950 5.1123 40 1 2.4534 -8.6794 8.3832 41 1 3.2412 -7.9393 -0.3621 42 1 4.4316 -7.1895 0.7359 43 1 5.4668 -5.6924 -0.8796 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219418355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:32 Heat of formation + Delta-G solvation = -110.963928 kcal Electronic energy + Delta-G solvation = -29360.485123 eV Core-core repulsion = 25020.649148 eV Total energy + Delta-G solvation = -4339.835975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.51698 -41.38636 -40.35322 -39.40288 -36.79907 -36.55173 -35.89250 -35.40028 -33.33527 -32.81416 -31.59023 -29.57995 -28.69772 -27.93924 -26.09200 -24.89244 -23.20701 -22.56047 -21.83743 -21.71958 -21.04016 -19.91153 -19.55742 -18.54649 -17.99248 -17.74714 -17.53009 -17.21305 -16.64637 -16.58407 -16.27442 -15.95186 -15.72824 -15.64595 -15.50454 -15.16906 -14.73334 -14.40305 -14.32246 -14.22011 -14.08509 -13.63069 -13.43581 -13.26277 -13.11357 -13.02636 -12.76685 -12.46688 -12.44503 -12.20580 -12.14726 -12.08062 -12.04572 -11.50262 -11.37169 -11.12308 -10.43205 -10.30481 -10.04049 -9.97502 -9.41842 -8.49387 -5.97892 -0.30532 1.31714 1.35722 1.37079 1.38989 1.49895 1.86234 1.95550 2.02001 2.26677 2.80839 3.06036 3.10920 3.17384 3.35071 3.47467 3.60912 3.64242 3.70912 4.02217 4.15979 4.24184 4.34577 4.37116 4.38518 4.42376 4.50970 4.62111 4.67224 4.76306 4.82232 4.89576 4.96525 5.05878 5.16593 5.27046 5.38150 5.70305 5.85638 6.03846 6.21039 6.50324 6.57858 6.77563 6.97103 7.10403 7.52843 8.09640 8.67890 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010948 B = 0.002900 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.940021 B = 9652.641006 C =11271.286259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.074 3.926 3 N -0.524 5.524 4 C 0.231 3.769 5 O -0.191 6.191 6 C -0.138 4.138 7 C 0.602 3.398 8 O -0.544 6.544 9 N -0.687 5.687 10 C 0.149 3.851 11 H 0.103 0.897 12 C 0.038 3.962 13 N -0.506 5.506 14 C 0.052 3.948 15 C 0.435 3.565 16 O -0.616 6.616 17 N -0.572 5.572 18 C -0.335 4.335 19 H 0.076 0.924 20 C -0.011 4.011 21 N -0.919 5.919 22 Si 0.991 3.009 23 H -0.271 1.271 24 H -0.267 1.267 25 H -0.274 1.274 26 C 0.002 3.998 27 C 0.107 3.893 28 H 0.106 0.894 29 O -0.571 6.571 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.313 0.687 34 H 0.421 0.579 35 H 0.033 0.967 36 H 0.060 0.940 37 H 0.120 0.880 38 H 0.069 0.931 39 H 0.396 0.604 40 H 0.278 0.722 41 H 0.112 0.888 42 H 0.075 0.925 43 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.862 10.937 -19.180 25.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.049 4.049 3 N -0.253 5.253 4 C 0.007 3.993 5 O -0.077 6.077 6 C -0.193 4.193 7 C 0.389 3.611 8 O -0.424 6.424 9 N -0.339 5.339 10 C 0.043 3.957 11 H 0.121 0.879 12 C -0.091 4.091 13 N -0.231 5.231 14 C -0.080 4.080 15 C 0.223 3.777 16 O -0.502 6.502 17 N -0.210 5.210 18 C -0.464 4.464 19 H 0.094 0.906 20 C -0.211 4.211 21 N -0.560 5.560 22 Si 0.814 3.186 23 H -0.197 1.197 24 H -0.192 1.192 25 H -0.200 1.200 26 C -0.125 4.125 27 C 0.047 3.953 28 H 0.124 0.876 29 O -0.382 6.382 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.102 0.898 33 H 0.327 0.673 34 H 0.260 0.740 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.138 0.862 38 H 0.086 0.914 39 H 0.230 0.770 40 H 0.088 0.912 41 H 0.130 0.870 42 H 0.093 0.907 43 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 9.480 11.801 -19.117 24.385 hybrid contribution 1.376 -0.792 1.359 2.089 sum 10.856 11.009 -17.759 23.546 Atomic orbital electron populations 1.20409 0.85052 1.04557 1.03919 1.22332 0.99064 0.86799 0.96746 1.70394 1.02570 1.31196 1.21164 1.29670 0.98256 0.78908 0.92460 1.84500 1.28353 1.25511 1.69363 1.22562 0.82482 0.95512 1.18731 1.16591 0.85608 0.82348 0.76594 1.90883 1.17060 1.82480 1.51988 1.45461 1.10538 1.04845 1.73027 1.21990 0.98708 0.79570 0.95424 0.87887 1.23468 1.00909 0.88257 0.96450 1.64516 1.41806 1.09769 1.07054 1.21988 0.94898 1.02392 0.88701 1.20818 0.89705 0.83464 0.83752 1.90507 1.31022 1.47630 1.81041 1.41903 1.19059 1.53163 1.06863 1.19601 0.99601 1.37998 0.89225 0.90608 1.26006 0.99598 0.96046 0.99410 1.69656 1.25661 1.40058 1.20623 0.85028 0.77900 0.78611 0.77044 1.19668 1.19168 1.19966 1.23901 0.94600 0.99715 0.94329 1.22733 0.83426 0.89662 0.99463 0.87612 1.86282 1.17009 1.46525 1.88346 0.89994 0.88768 0.89760 0.67282 0.73993 0.94893 0.92163 0.86222 0.91356 0.76962 0.91218 0.86999 0.90676 0.73988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.94 9.87 71.23 0.70 -1.24 16 2 C 0.07 1.88 7.16 41.83 0.30 2.18 16 3 N -0.52 -11.29 11.26 -303.13 -3.41 -14.71 16 4 C 0.23 3.19 13.21 130.42 1.72 4.91 16 5 O -0.19 -3.71 10.57 -7.07 -0.07 -3.78 16 6 C -0.14 -3.57 7.18 24.04 0.17 -3.40 16 7 C 0.60 18.07 7.79 86.46 0.67 18.75 16 8 O -0.54 -19.86 14.44 -4.32 -0.06 -19.92 16 9 N -0.69 -17.72 5.11 -440.76 -2.25 -19.98 16 10 C 0.15 4.03 3.38 46.20 0.16 4.19 16 11 H 0.10 3.09 7.55 -2.39 -0.02 3.07 16 12 C 0.04 1.37 5.29 86.59 0.46 1.82 16 13 N -0.51 -16.19 5.11 -886.82 -4.54 -20.73 16 14 C 0.05 1.78 5.31 85.56 0.45 2.24 16 15 C 0.44 21.31 7.42 87.66 0.65 21.96 16 16 O -0.62 -35.43 13.89 -3.08 -0.04 -35.47 16 17 N -0.57 -30.00 5.29 -306.98 -1.62 -31.62 16 18 C -0.33 -19.49 9.68 84.04 0.81 -18.68 16 19 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 20 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 21 N -0.92 -50.07 13.05 21.67 0.28 -49.79 16 22 Si 0.99 43.90 29.55 68.60 2.03 45.93 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 26 C 0.00 0.04 6.50 86.45 0.56 0.61 16 27 C 0.11 1.84 4.30 31.47 0.14 1.98 16 28 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 29 O -0.57 -7.72 11.64 -148.98 -1.73 -9.46 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 31 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.08 2.19 6.47 -2.39 -0.02 2.18 16 33 H 0.31 0.01 8.06 -2.91 -0.02 -0.01 16 34 H 0.42 9.35 7.04 -92.71 -0.65 8.70 16 35 H 0.03 1.21 8.01 -2.39 -0.02 1.19 16 36 H 0.06 2.81 6.47 -2.39 -0.02 2.80 16 37 H 0.12 3.52 8.14 -2.39 -0.02 3.50 16 38 H 0.07 2.11 7.99 -2.39 -0.02 2.09 16 39 H 0.40 19.55 7.90 -92.71 -0.73 18.82 16 40 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 41 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.08 1.22 7.50 -2.39 -0.02 1.20 16 43 H 0.41 1.55 9.11 -74.06 -0.67 0.88 16 Total: -1.00 -82.95 366.06 -5.11 -88.06 By element: Atomic # 1 Polarization: 37.20 SS G_CDS: -0.95 Total: 36.24 kcal Atomic # 6 Polarization: 27.94 SS G_CDS: 7.27 Total: 35.21 kcal Atomic # 7 Polarization: -125.28 SS G_CDS: -11.54 Total: -136.82 kcal Atomic # 8 Polarization: -66.71 SS G_CDS: -1.91 Total: -68.63 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -82.95 -5.11 -88.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219418355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.902 kcal (2) G-P(sol) polarization free energy of solvation -82.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds