Wall clock time and date at job start Tue Mar 31 2020 20:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99899 * 2 1 4 4 H 1.48501 * 109.46890 * 240.00149 * 3 2 1 5 5 H 1.48503 * 109.47041 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47049 * 120.00007 * 3 2 1 7 7 C 1.38811 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00034 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00123 * 359.97438 * 7 2 1 10 10 C 1.47018 * 125.65291 * 179.97438 * 9 7 2 11 11 C 1.54326 * 107.27514 * 178.97752 * 10 9 7 12 12 H 1.08997 * 110.71548 * 96.35260 * 11 10 9 13 13 N 1.46499 * 110.72299 * 219.44888 * 11 10 9 14 14 C 1.34777 * 119.99665 * 273.82488 * 13 11 10 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 11 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 11 17 17 C 1.52999 * 109.47004 * 179.97438 * 16 14 13 18 18 O 1.42904 * 109.47519 * 179.97438 * 17 16 14 19 19 C 1.35894 * 117.00100 * 179.97438 * 18 17 16 20 20 C 1.38767 * 120.04484 * 359.72532 * 19 18 17 21 21 C 1.38136 * 119.99588 * 179.78701 * 20 19 18 22 22 C 1.38259 * 120.07657 * 0.47092 * 21 20 19 23 23 C 1.38468 * 120.08506 * 359.78501 * 22 21 20 24 24 F 1.35101 * 119.99862 * 179.97438 * 23 22 21 25 25 C 1.38387 * 120.00911 * 359.97438 * 23 22 21 26 26 C 1.55162 * 102.94064 * 337.81395 * 11 10 9 27 27 H 1.08990 * 111.00256 * 153.57647 * 26 11 10 28 28 O 1.42902 * 111.00099 * 277.42509 * 26 11 10 29 29 C 1.47425 * 125.64426 * 0.04559 * 9 7 2 30 30 H 0.96993 * 120.00174 * 359.97438 * 1 2 3 31 31 H 1.09007 * 109.87577 * 59.56210 * 10 9 7 32 32 H 1.08995 * 110.01627 * 298.47321 * 10 9 7 33 33 H 0.97001 * 119.99790 * 93.54201 * 13 11 10 34 34 H 1.09003 * 109.47112 * 299.99065 * 16 14 13 35 35 H 1.08993 * 109.47916 * 59.99687 * 16 14 13 36 36 H 1.09000 * 109.47527 * 299.99994 * 17 16 14 37 37 H 1.09007 * 109.47302 * 59.99534 * 17 16 14 38 38 H 1.08006 * 120.00301 * 0.02643 * 20 19 18 39 39 H 1.07992 * 119.96360 * 180.25082 * 21 20 19 40 40 H 1.07996 * 119.94990 * 179.76662 * 22 21 20 41 41 H 1.07999 * 120.04448 * 179.97438 * 25 23 22 42 42 H 0.96700 * 113.99819 * 180.02562 * 28 26 11 43 43 H 1.09000 * 110.37155 * 322.92707 * 29 9 7 44 44 H 1.08994 * 110.37056 * 85.25337 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 1.9318 -3.7275 0.0017 11 6 0.7784 -4.7525 0.0294 12 1 0.5479 -5.1008 -0.9774 13 7 1.1086 -5.8809 0.9033 14 6 1.8055 -6.9276 0.4182 15 8 2.1549 -6.9375 -0.7432 16 6 2.1505 -8.0855 1.3188 17 6 2.9373 -9.1313 0.5262 18 8 3.2650 -10.2291 1.3803 19 6 3.9683 -11.2522 0.8277 20 6 4.3306 -11.2029 -0.5110 21 6 5.0493 -12.2414 -1.0706 22 6 5.4001 -13.3351 -0.3009 23 6 5.0357 -13.3901 1.0339 24 9 5.3790 -14.4598 1.7842 25 6 4.3200 -12.3494 1.5994 26 6 -0.4016 -3.9321 0.6142 27 1 -1.3589 -4.3327 0.2810 28 8 -0.3363 -3.8867 2.0410 29 6 -0.1415 -2.5332 0.0013 30 1 -0.4850 0.8400 0.0004 31 1 2.5584 -3.8506 0.8851 32 1 2.5297 -3.8665 -0.8989 33 1 0.8292 -5.8729 1.8322 34 1 2.7561 -7.7297 2.1523 35 1 1.2337 -8.5342 1.7012 36 1 2.3315 -9.4871 -0.3072 37 1 3.8542 -8.6829 0.1434 38 1 4.0540 -10.3509 -1.1144 39 1 5.3344 -12.2007 -2.1114 40 1 5.9587 -14.1476 -0.7414 41 1 4.0351 -12.3919 2.6402 42 1 -1.0537 -3.3850 2.4518 43 1 -0.5995 -1.7585 0.6163 44 1 -0.5270 -2.4874 -1.0171 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219752278.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:44 Heat of formation + Delta-G solvation = -110.535392 kcal Electronic energy + Delta-G solvation = -28111.775327 eV Core-core repulsion = 23752.037973 eV Total energy + Delta-G solvation = -4359.737354 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.26817 -40.54030 -39.75862 -38.04339 -37.51701 -34.78560 -34.05901 -32.59064 -31.65984 -30.96089 -29.93321 -28.57002 -27.12260 -25.14878 -24.17878 -23.26663 -22.16356 -20.79230 -20.32627 -19.80020 -19.00625 -17.48832 -17.03319 -16.86407 -16.79083 -16.64622 -16.48578 -15.99050 -15.91314 -15.44452 -14.93238 -14.82608 -14.65052 -14.22904 -14.12802 -13.85058 -13.21256 -13.13337 -13.08860 -12.90685 -12.58416 -12.46444 -12.10958 -12.01014 -11.78880 -11.38501 -11.30217 -11.11874 -11.05369 -10.87913 -10.66291 -10.42204 -10.11946 -9.87586 -9.83521 -9.29170 -9.27277 -8.81076 -8.71669 -8.67579 -6.89024 -5.72843 -3.12816 0.74759 0.90632 2.48073 2.65404 3.21141 3.37907 3.41352 3.42327 3.45629 3.99413 4.31384 4.43924 4.50000 4.55328 4.60385 4.66284 4.67706 4.88976 4.92286 5.00964 5.18601 5.29712 5.31751 5.44767 5.45475 5.46692 5.57635 5.67419 5.69397 5.84325 5.86615 5.95700 5.98743 6.21896 6.33007 6.45881 6.65071 6.87056 6.96113 7.20873 7.51870 7.64876 7.71321 8.05786 8.27396 8.31609 9.14627 9.75593 10.38549 11.32295 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025814 B = 0.001776 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.429579 B =15764.243428 C =16242.891365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.012 4.012 3 Si 0.917 3.083 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.218 4.218 8 H 0.078 0.922 9 N -0.596 5.596 10 C 0.132 3.868 11 C 0.142 3.858 12 H 0.100 0.900 13 N -0.704 5.704 14 C 0.515 3.485 15 O -0.547 6.547 16 C -0.140 4.140 17 C 0.074 3.926 18 O -0.313 6.313 19 C 0.165 3.835 20 C -0.218 4.218 21 C -0.049 4.049 22 C -0.195 4.195 23 C 0.136 3.864 24 F -0.136 7.136 25 C -0.193 4.193 26 C 0.067 3.933 27 H 0.059 0.941 28 O -0.561 6.561 29 C 0.127 3.873 30 H 0.253 0.747 31 H 0.029 0.971 32 H 0.028 0.972 33 H 0.410 0.590 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.143 0.857 42 H 0.380 0.620 43 H 0.116 0.884 44 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.127 -23.787 2.767 24.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.207 4.207 3 Si 0.748 3.252 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.346 4.346 8 H 0.095 0.905 9 N -0.323 5.323 10 C 0.005 3.995 11 C 0.037 3.963 12 H 0.118 0.882 13 N -0.355 5.355 14 C 0.301 3.699 15 O -0.425 6.425 16 C -0.180 4.180 17 C -0.001 4.001 18 O -0.226 6.226 19 C 0.119 3.881 20 C -0.236 4.236 21 C -0.067 4.067 22 C -0.214 4.214 23 C 0.117 3.883 24 F -0.114 7.114 25 C -0.212 4.212 26 C 0.007 3.993 27 H 0.077 0.923 28 O -0.367 6.367 29 C 0.001 3.999 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.245 0.755 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.158 0.842 39 H 0.155 0.845 40 H 0.154 0.846 41 H 0.161 0.839 42 H 0.228 0.772 43 H 0.133 0.867 44 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 3.800 -23.908 2.052 24.295 hybrid contribution -0.074 1.121 0.404 1.194 sum 3.726 -22.786 2.456 23.219 Atomic orbital electron populations 1.69699 1.04907 1.24971 1.58066 1.24763 0.95785 0.97734 1.02450 0.86103 0.78384 0.82786 0.77944 1.21185 1.21549 1.21146 1.19050 0.90557 0.82282 1.42695 0.90458 1.44274 1.01409 0.99683 1.86891 1.21584 0.93818 0.85594 0.98538 1.22173 0.95389 0.84909 0.93817 0.88200 1.45810 1.55734 1.18561 1.15389 1.20195 0.78132 0.83408 0.88189 1.90724 1.53446 1.80398 1.17961 1.21459 1.02817 0.94112 0.99646 1.22534 1.00338 0.84849 0.92351 1.85982 1.68693 1.28031 1.39879 1.18572 0.90805 0.87510 0.91197 1.21486 1.05231 1.02263 0.94662 1.20830 0.94410 0.91620 0.99882 1.21060 1.06278 1.01397 0.92678 1.17275 0.97525 0.84230 0.89302 1.91517 1.90190 1.53463 1.76250 1.20250 1.05719 0.93370 1.01871 1.23577 0.95528 0.98708 0.81496 0.92313 1.86230 1.54765 1.76829 1.18915 1.22612 0.85948 0.92429 0.98909 0.93646 0.95325 0.95412 0.75452 0.87555 0.87714 0.90658 0.90563 0.84233 0.84539 0.84636 0.83889 0.77224 0.86665 0.95953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.13 10.09 55.49 0.56 -25.57 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 3 Si 0.92 21.88 29.55 -169.99 -5.02 16.86 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.22 -6.04 10.27 -15.06 -0.15 -6.20 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.09 3.39 -170.06 -0.58 -15.67 16 10 C 0.13 2.85 6.99 -3.06 -0.02 2.83 16 11 C 0.14 2.51 3.12 -66.09 -0.21 2.30 16 12 H 0.10 1.80 7.70 -51.93 -0.40 1.40 16 13 N -0.70 -10.00 5.09 -52.03 -0.26 -10.27 16 14 C 0.52 7.01 7.82 -10.99 -0.09 6.92 16 15 O -0.55 -9.34 15.71 5.55 0.09 -9.25 16 16 C -0.14 -1.33 6.07 -27.88 -0.17 -1.50 16 17 C 0.07 0.73 4.03 37.16 0.15 0.88 16 18 O -0.31 -3.20 10.14 -19.41 -0.20 -3.40 16 19 C 0.17 1.64 6.68 -39.22 -0.26 1.38 16 20 C -0.22 -1.92 9.04 -39.42 -0.36 -2.28 16 21 C -0.05 -0.37 10.04 -39.61 -0.40 -0.77 16 22 C -0.20 -1.53 10.02 -39.49 -0.40 -1.93 16 23 C 0.14 1.25 7.30 -39.44 -0.29 0.97 16 24 F -0.14 -1.32 17.27 2.25 0.04 -1.28 16 25 C -0.19 -1.82 9.97 -39.37 -0.39 -2.21 16 26 C 0.07 1.17 4.28 -24.57 -0.11 1.06 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 O -0.56 -9.03 12.23 -35.23 -0.43 -9.46 16 29 C 0.13 2.89 5.62 -2.52 -0.01 2.87 16 30 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.03 0.64 8.03 -51.93 -0.42 0.22 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.41 5.15 7.57 -40.82 -0.31 4.84 16 34 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.73 7.61 -51.93 -0.39 0.34 16 37 H 0.08 0.78 7.63 -51.93 -0.40 0.39 16 38 H 0.14 1.14 6.30 -52.48 -0.33 0.81 16 39 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.38 4.89 9.12 45.56 0.42 5.30 16 43 H 0.12 2.91 5.87 -51.93 -0.31 2.61 16 44 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 372.37 15.07 5.61 5.61 Total: -1.00 -32.41 372.37 -8.06 -40.47 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -5.06 Total: 8.07 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -2.79 Total: 3.89 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.28 Total: -51.50 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.54 Total: -22.11 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.41 -8.06 -40.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219752278.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.069 kcal (2) G-P(sol) polarization free energy of solvation -32.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds