Wall clock time and date at job start Tue Mar 31 2020 20:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 120.00096 * 2 1 4 4 H 1.48491 * 109.47423 * 270.00336 * 3 2 1 5 5 H 1.48505 * 109.46968 * 30.00278 * 3 2 1 6 6 H 1.48504 * 109.47133 * 149.99742 * 3 2 1 7 7 C 1.38955 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99767 * 359.97438 * 7 2 1 9 9 N 1.37092 * 120.00107 * 179.97438 * 7 2 1 10 10 C 1.34784 * 119.99968 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99407 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99774 * 179.72830 * 10 9 7 13 13 N 1.46904 * 109.46892 * 179.97438 * 12 10 9 14 14 C 1.48562 * 110.99976 * 169.99611 * 13 12 10 15 15 C 1.54379 * 104.59081 * 159.04035 * 14 13 12 16 16 H 1.08999 * 110.32378 * 95.15065 * 15 14 13 17 17 N 1.46498 * 110.32148 * 217.25025 * 15 14 13 18 18 C 1.34780 * 120.00310 * 273.54644 * 17 15 14 19 19 O 1.21287 * 119.99696 * 0.02562 * 18 17 15 20 20 C 1.50697 * 120.00208 * 180.02562 * 18 17 15 21 21 C 1.50701 * 109.46987 * 180.02562 * 20 18 17 22 22 C 1.41382 * 128.00374 * 269.67406 * 21 20 18 23 23 N 1.30180 * 106.39163 * 179.89594 * 22 21 20 24 24 O 1.20925 * 111.60617 * 0.39607 * 23 22 21 25 25 C 1.34042 * 111.56694 * 359.74186 * 24 23 22 26 26 C 1.54257 * 105.06286 * 336.14651 * 15 14 13 27 27 H 1.09004 * 110.32078 * 119.00291 * 26 15 14 28 28 O 1.42897 * 110.32366 * 241.10277 * 26 15 14 29 29 C 1.48557 * 111.00133 * 285.41582 * 13 12 10 30 30 H 0.97000 * 119.99725 * 0.02562 * 1 2 3 31 31 H 0.97005 * 120.00185 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.46809 * 299.99238 * 12 10 9 33 33 H 1.08993 * 109.47525 * 59.99679 * 12 10 9 34 34 H 1.09003 * 110.40937 * 277.81924 * 14 13 12 35 35 H 1.08999 * 110.41146 * 40.26560 * 14 13 12 36 36 H 0.96995 * 120.00178 * 93.55326 * 17 15 14 37 37 H 1.09004 * 109.46887 * 299.99976 * 20 18 17 38 38 H 1.08993 * 109.47446 * 60.00207 * 20 18 17 39 39 H 1.07994 * 126.80687 * 0.03926 * 22 21 20 40 40 H 1.07992 * 126.77519 * 179.97438 * 25 24 23 41 41 H 0.96704 * 113.99716 * 180.02562 * 28 26 15 42 42 H 1.09004 * 110.41098 * 319.74112 * 29 13 12 43 43 H 1.09005 * 110.40948 * 82.18168 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0538 -2.3706 -0.0011 11 8 3.4473 -3.4209 -0.0001 12 6 5.5608 -2.3705 -0.0078 13 7 6.0505 -3.7555 -0.0058 14 6 7.5146 -3.8028 -0.2532 15 6 7.9581 -5.1745 0.2991 16 1 7.9859 -5.9139 -0.5013 17 7 9.2731 -5.0657 0.9356 18 6 10.3926 -5.1890 0.1953 19 8 10.3113 -5.3896 -0.9981 20 6 11.7452 -5.0775 0.8502 21 6 12.8224 -5.2505 -0.1893 22 6 13.4505 -6.4484 -0.6012 23 7 14.3115 -6.1151 -1.5189 24 8 14.3097 -4.9225 -1.7191 25 6 13.4174 -4.2937 -0.9412 26 6 6.8870 -5.5517 1.3431 27 1 6.3885 -6.4777 1.0564 28 8 7.4804 -5.6883 2.6358 29 6 5.8864 -4.3763 1.3338 30 1 -0.4850 0.8401 -0.0004 31 1 3.8649 -0.3632 -0.0014 32 1 5.9200 -1.8590 -0.9009 33 1 5.9281 -1.8543 0.8791 34 1 7.7219 -3.7380 -1.3214 35 1 8.0168 -2.9971 0.2821 36 1 9.3381 -4.9049 1.8900 37 1 11.8439 -4.0967 1.3155 38 1 11.8457 -5.8521 1.6104 39 1 13.2532 -7.4431 -0.2299 40 1 13.2135 -3.2334 -0.9181 41 1 6.8538 -5.9253 3.3332 42 1 6.1338 -3.6602 2.1175 43 1 4.8678 -4.7431 1.4606 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220207609.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:58 Heat of formation + Delta-G solvation = -64.117831 kcal Electronic energy + Delta-G solvation = -28648.579927 eV Core-core repulsion = 24310.775351 eV Total energy + Delta-G solvation = -4337.804576 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -45.85771 -41.34599 -40.37242 -39.40972 -36.87996 -35.95694 -35.55862 -35.18917 -33.75109 -33.10971 -31.74131 -29.96621 -28.88975 -27.94318 -25.82045 -23.98297 -23.18294 -22.67142 -21.68136 -21.33155 -21.23248 -20.21288 -18.89724 -18.71447 -18.42006 -17.91159 -17.77417 -17.06313 -16.77304 -16.55113 -16.33636 -16.07695 -15.85811 -15.54632 -15.07603 -15.02655 -14.77192 -14.46468 -14.22464 -14.19789 -14.06451 -13.86756 -13.63132 -13.27569 -13.04171 -12.92133 -12.57071 -12.51254 -12.40140 -12.13778 -12.01599 -11.97470 -11.49409 -11.36020 -11.04156 -10.97706 -10.45699 -10.30118 -10.23955 -10.08482 -9.45666 -8.40743 -6.01506 0.62514 1.27587 1.29912 1.36206 1.44606 1.67470 1.95633 2.10582 2.23347 2.45210 2.69303 3.08552 3.14723 3.27478 3.40002 3.48965 3.71702 3.82268 3.87592 4.06235 4.09797 4.14700 4.21706 4.27796 4.30672 4.42423 4.47362 4.63760 4.64956 4.79184 4.84744 4.87103 4.89933 4.98541 5.17077 5.40044 5.52061 5.77376 5.82263 5.97581 6.59921 6.64021 6.77705 6.88938 7.33845 7.34515 7.40195 7.97318 8.76783 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019674 B = 0.002077 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.832206 B =13479.477790 C =14388.098912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.017 4.017 3 Si 0.965 3.035 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.230 1.230 7 C -0.326 4.326 8 H 0.055 0.945 9 N -0.592 5.592 10 C 0.453 3.547 11 O -0.606 6.606 12 C 0.046 3.954 13 N -0.508 5.508 14 C 0.030 3.970 15 C 0.155 3.845 16 H 0.086 0.914 17 N -0.696 5.696 18 C 0.510 3.490 19 O -0.583 6.583 20 C -0.052 4.052 21 C -0.198 4.198 22 C -0.006 4.006 23 N -0.404 5.404 24 O 0.079 5.921 25 C -0.039 4.039 26 C 0.112 3.888 27 H 0.077 0.923 28 O -0.560 6.560 29 C 0.007 3.993 30 H 0.279 0.721 31 H 0.389 0.611 32 H 0.117 0.883 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.422 0.578 37 H 0.144 0.856 38 H 0.135 0.865 39 H 0.203 0.797 40 H 0.251 0.749 41 H 0.404 0.596 42 H 0.064 0.936 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.321 -4.686 8.543 30.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.215 4.215 3 Si 0.785 3.215 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.153 1.153 7 C -0.455 4.455 8 H 0.073 0.927 9 N -0.234 5.234 10 C 0.240 3.760 11 O -0.489 6.489 12 C -0.086 4.086 13 N -0.234 5.234 14 C -0.099 4.099 15 C 0.048 3.952 16 H 0.104 0.896 17 N -0.351 5.351 18 C 0.298 3.702 19 O -0.462 6.462 20 C -0.091 4.091 21 C -0.203 4.203 22 C -0.185 4.185 23 N -0.111 5.111 24 O 0.018 5.982 25 C -0.120 4.120 26 C 0.052 3.948 27 H 0.095 0.905 28 O -0.369 6.369 29 C -0.121 4.121 30 H 0.088 0.912 31 H 0.225 0.775 32 H 0.135 0.865 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.262 0.738 37 H 0.162 0.838 38 H 0.153 0.847 39 H 0.220 0.780 40 H 0.267 0.733 41 H 0.256 0.744 42 H 0.082 0.918 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 29.772 -6.248 6.228 31.051 hybrid contribution -1.450 1.338 1.460 2.455 sum 28.321 -4.910 7.688 29.754 Atomic orbital electron populations 1.69806 1.08135 1.29205 1.50394 1.26124 0.96482 1.02745 0.96181 0.85367 0.79533 0.76754 0.79867 1.18370 1.20062 1.15278 1.18980 0.81438 0.94871 1.50225 0.92657 1.42029 1.05811 1.07550 1.68058 1.20804 0.90607 0.83358 0.81194 1.90535 1.71214 1.32642 1.54559 1.22001 0.90729 0.91187 1.04676 1.64944 1.13940 1.16208 1.28264 1.23539 0.86973 0.97305 1.02084 1.21485 0.82379 0.96776 0.94556 0.89609 1.45656 1.03605 1.72648 1.13149 1.21207 0.87019 0.75149 0.86826 1.90751 1.88028 1.50119 1.17328 1.19951 0.85174 1.08468 0.95547 1.21039 1.02716 0.92264 1.04263 1.25375 0.94910 1.02516 0.95693 1.73860 1.23253 0.94811 1.19176 1.84768 1.48698 1.14195 1.50553 1.26545 0.91380 1.02259 0.91804 1.22481 0.91349 0.96862 0.84141 0.90521 1.86176 1.40108 1.93059 1.17534 1.23852 1.00510 0.97390 0.90349 0.91188 0.77548 0.86472 0.89587 0.90070 0.91288 0.73822 0.83840 0.84714 0.78028 0.73313 0.74395 0.91787 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.87 13.96 21.66 0.30 -55.57 16 2 C -0.02 -0.92 5.50 84.93 0.47 -0.46 16 3 Si 0.96 38.03 27.74 68.60 1.90 39.93 16 4 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 5 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.23 -7.47 6.52 99.48 0.65 -6.83 16 7 C -0.33 -18.82 10.16 84.04 0.85 -17.96 16 8 H 0.06 3.82 7.39 -2.91 -0.02 3.80 16 9 N -0.59 -27.31 5.09 -306.97 -1.56 -28.87 16 10 C 0.45 19.92 7.63 87.65 0.67 20.59 16 11 O -0.61 -32.77 14.81 -3.06 -0.05 -32.82 16 12 C 0.05 1.35 5.32 85.56 0.46 1.80 16 13 N -0.51 -14.57 4.97 -886.05 -4.41 -18.98 16 14 C 0.03 0.65 6.17 86.45 0.53 1.18 16 15 C 0.15 3.05 3.36 45.89 0.15 3.21 16 16 H 0.09 2.07 7.64 -2.39 -0.02 2.05 16 17 N -0.70 -9.63 4.90 -438.30 -2.15 -11.78 16 18 C 0.51 8.04 7.82 87.66 0.69 8.73 16 19 O -0.58 -15.26 15.73 -3.05 -0.05 -15.31 16 20 C -0.05 -0.36 6.28 29.10 0.18 -0.18 16 21 C -0.20 -2.60 4.82 -19.73 -0.10 -2.69 16 22 C -0.01 -0.11 12.16 85.71 1.04 0.93 16 23 N -0.40 -8.79 12.07 -59.24 -0.72 -9.51 16 24 O 0.08 1.49 11.20 71.62 0.80 2.29 16 25 C -0.04 -0.47 12.26 67.18 0.82 0.36 16 26 C 0.11 2.08 4.42 31.49 0.14 2.21 16 27 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 28 O -0.56 -6.76 11.49 -148.98 -1.71 -8.47 16 29 C 0.01 0.19 5.66 86.45 0.49 0.68 16 30 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 31 H 0.39 14.74 5.76 -92.70 -0.53 14.20 16 32 H 0.12 2.92 8.08 -2.39 -0.02 2.90 16 33 H 0.09 2.02 7.77 -2.39 -0.02 2.00 16 34 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 1.23 7.91 -2.39 -0.02 1.21 16 36 H 0.42 3.94 7.17 -92.71 -0.67 3.28 16 37 H 0.14 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.20 2.45 8.06 -2.91 -0.02 2.43 16 40 H 0.25 0.78 8.06 -2.91 -0.02 0.76 16 41 H 0.40 2.33 9.12 -74.05 -0.68 1.65 16 42 H 0.06 1.43 7.69 -2.39 -0.02 1.41 16 43 H 0.07 2.19 7.25 -2.38 -0.02 2.18 16 Total: -1.00 -88.56 367.03 -2.07 -90.63 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: -0.84 Total: 30.05 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: 6.40 Total: 18.39 kcal Atomic # 7 Polarization: -116.18 SS G_CDS: -8.53 Total: -124.71 kcal Atomic # 8 Polarization: -53.30 SS G_CDS: -1.00 Total: -54.31 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 1.90 Total: 39.93 kcal Total: -88.56 -2.07 -90.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220207609.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.517 kcal (2) G-P(sol) polarization free energy of solvation -88.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds