Wall clock time and date at job start Tue Mar 31 2020 20:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 119.99986 * 2 1 4 4 H 1.48500 * 109.47124 * 274.10932 * 3 2 1 5 5 H 1.48497 * 109.47029 * 34.11042 * 3 2 1 6 6 H 1.48500 * 109.47132 * 154.11263 * 3 2 1 7 7 C 1.38813 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00422 * 189.61283 * 7 2 1 9 9 N 1.36943 * 119.99714 * 9.33601 * 7 2 1 10 10 C 1.47022 * 125.64691 * 190.17164 * 9 7 2 11 11 C 1.54325 * 107.26807 * 181.02790 * 10 9 7 12 12 H 1.08999 * 110.71947 * 140.74211 * 11 10 9 13 13 N 1.46507 * 110.71679 * 263.82772 * 11 10 9 14 14 C 1.34774 * 119.99858 * 273.54727 * 13 11 10 15 15 O 1.21273 * 120.00232 * 0.02562 * 14 13 11 16 16 C 1.50700 * 119.99424 * 180.02562 * 14 13 11 17 17 C 1.52999 * 109.46983 * 180.02562 * 16 14 13 18 18 O 1.42900 * 109.47422 * 179.97438 * 17 16 14 19 19 C 1.35952 * 117.00341 * 180.02562 * 18 17 16 20 20 C 1.38705 * 120.02744 * 359.72421 * 19 18 17 21 21 C 1.38152 * 119.96679 * 179.74828 * 20 19 18 22 22 C 1.38450 * 120.03049 * 0.53042 * 21 20 19 23 23 F 1.35098 * 119.97050 * 179.72627 * 22 21 20 24 24 C 1.38457 * 120.05779 * 359.74111 * 22 21 20 25 25 C 1.38150 * 120.03263 * 359.97438 * 24 22 21 26 26 C 1.55153 * 102.94383 * 22.19397 * 11 10 9 27 27 H 1.08994 * 111.00165 * 82.57266 * 26 11 10 28 28 O 1.42907 * 111.00231 * 206.38496 * 26 11 10 29 29 C 1.47418 * 125.64844 * 9.87031 * 9 7 2 30 30 H 0.97002 * 120.00219 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.88219 * 300.44551 * 10 9 7 32 32 H 1.09001 * 109.87901 * 61.45485 * 10 9 7 33 33 H 0.97005 * 119.99535 * 93.55199 * 13 11 10 34 34 H 1.09001 * 109.47531 * 299.99763 * 16 14 13 35 35 H 1.08994 * 109.47631 * 60.00221 * 16 14 13 36 36 H 1.09000 * 109.47475 * 300.00056 * 17 16 14 37 37 H 1.08999 * 109.47410 * 60.00012 * 17 16 14 38 38 H 1.07996 * 120.01752 * 0.02562 * 20 19 18 39 39 H 1.07998 * 119.98198 * 180.29876 * 21 20 19 40 40 H 1.08007 * 119.97856 * 179.97438 * 24 22 21 41 41 H 1.08001 * 120.01188 * 180.02562 * 25 24 22 42 42 H 0.96696 * 113.99433 * 179.97438 * 28 26 11 43 43 H 1.09005 * 110.36881 * 274.74515 * 29 9 7 44 44 H 1.09001 * 110.37090 * 37.06602 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4107 2.0966 -1.3965 5 1 1.4937 2.6260 0.7851 6 1 3.5885 1.4166 0.6113 7 6 2.0102 -1.2021 0.0005 8 1 3.0789 -1.2087 0.1567 9 7 1.3391 -2.3803 -0.1913 10 6 1.9012 -3.7264 -0.0075 11 6 0.7914 -4.7385 -0.3617 12 1 1.2039 -5.5888 -0.9048 13 7 0.0939 -5.1866 0.8462 14 6 0.5765 -6.2250 1.5570 15 8 1.5884 -6.7881 1.1971 16 6 -0.1414 -6.6861 2.7992 17 6 0.6091 -7.8702 3.4120 18 8 -0.0712 -8.3072 4.5903 19 6 0.4694 -9.3590 5.2610 20 6 1.6272 -9.9609 4.7908 21 6 2.1784 -11.0263 5.4763 22 6 1.5695 -11.5002 6.6258 23 9 2.1064 -12.5456 7.2920 24 6 0.4106 -10.9038 7.0930 25 6 -0.1395 -9.8346 6.4129 26 6 -0.1573 -3.9109 -1.2684 27 1 0.2060 -3.8877 -2.2958 28 8 -1.4921 -4.4182 -1.2113 29 6 -0.0684 -2.5089 -0.6103 30 1 -0.4850 0.8400 0.0004 31 1 2.7550 -3.8652 -0.6707 32 1 2.2113 -3.8602 1.0288 33 1 -0.7154 -4.7359 1.1343 34 1 -0.1815 -5.8695 3.5201 35 1 -1.1549 -6.9925 2.5406 36 1 0.6497 -8.6870 2.6914 37 1 1.6226 -7.5635 3.6708 38 1 2.1002 -9.5940 3.8919 39 1 3.0826 -11.4920 5.1131 40 1 -0.0636 -11.2749 7.9897 41 1 -1.0433 -9.3694 6.7778 42 1 -2.1213 -3.9324 -1.7619 43 1 -0.7287 -2.4509 0.2550 44 1 -0.3212 -1.7340 -1.3340 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220263136.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:46 Heat of formation + Delta-G solvation = -114.297866 kcal Electronic energy + Delta-G solvation = -28256.668499 eV Core-core repulsion = 23896.767991 eV Total energy + Delta-G solvation = -4359.900507 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.08561 -40.46783 -39.73593 -38.01397 -37.41633 -35.17312 -33.84057 -32.44114 -31.68149 -31.37832 -29.44544 -28.46391 -27.22873 -25.12884 -24.30228 -23.13217 -22.20319 -20.64601 -20.46803 -19.81785 -18.75850 -17.72721 -17.13879 -17.06702 -16.83313 -16.59281 -16.40942 -15.79655 -15.65944 -15.02397 -14.94156 -14.86932 -14.45834 -14.04074 -13.96425 -13.76679 -13.30984 -13.26222 -12.97254 -12.92047 -12.79944 -12.44977 -12.37988 -11.92377 -11.90649 -11.41097 -11.26789 -11.09145 -10.95787 -10.92310 -10.89554 -10.28947 -10.18772 -9.94786 -9.71833 -9.53224 -9.34262 -8.77379 -8.67605 -8.40234 -6.95519 -5.87181 -3.20712 0.81837 0.89904 2.64079 2.76630 3.24843 3.32982 3.39181 3.40748 3.58599 4.00742 4.32732 4.33369 4.44701 4.49800 4.60071 4.76907 4.78485 4.95024 4.99517 5.16996 5.18503 5.30216 5.32850 5.46719 5.53101 5.54708 5.59566 5.61698 5.73709 5.79881 5.81096 5.92183 6.04583 6.11679 6.37761 6.39821 6.57933 6.88603 7.05356 7.18223 7.35907 7.63154 7.75465 7.94826 8.11278 8.39663 9.05845 9.67145 10.32041 11.25706 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018892 B = 0.001931 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.718459 B =14493.923059 C =15092.783137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.230 4.230 8 H 0.079 0.921 9 N -0.599 5.599 10 C 0.126 3.874 11 C 0.145 3.855 12 H 0.092 0.908 13 N -0.694 5.694 14 C 0.519 3.481 15 O -0.554 6.554 16 C -0.140 4.140 17 C 0.075 3.925 18 O -0.313 6.313 19 C 0.128 3.872 20 C -0.180 4.180 21 C -0.111 4.111 22 C 0.054 3.946 23 F -0.143 7.143 24 C -0.114 4.114 25 C -0.126 4.126 26 C 0.062 3.938 27 H 0.072 0.928 28 O -0.565 6.565 29 C 0.149 3.851 30 H 0.254 0.746 31 H 0.036 0.964 32 H 0.033 0.967 33 H 0.408 0.592 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.379 0.621 43 H 0.036 0.964 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.401 -18.860 7.727 20.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.358 4.358 8 H 0.097 0.903 9 N -0.327 5.327 10 C -0.001 4.001 11 C 0.040 3.960 12 H 0.110 0.890 13 N -0.344 5.344 14 C 0.305 3.695 15 O -0.433 6.433 16 C -0.180 4.180 17 C 0.000 4.000 18 O -0.227 6.227 19 C 0.082 3.918 20 C -0.199 4.199 21 C -0.130 4.130 22 C 0.034 3.966 23 F -0.122 7.122 24 C -0.133 4.133 25 C -0.144 4.144 26 C 0.001 3.999 27 H 0.089 0.911 28 O -0.370 6.370 29 C 0.023 3.977 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.243 0.757 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.160 0.840 39 H 0.156 0.844 40 H 0.159 0.841 41 H 0.160 0.840 42 H 0.226 0.774 43 H 0.054 0.946 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.600 -19.371 7.942 21.096 hybrid contribution 0.100 1.409 -0.225 1.431 sum -2.500 -17.961 7.717 19.708 Atomic orbital electron populations 1.69922 1.04978 1.25362 1.56412 1.24836 0.95700 0.97941 1.01859 0.86076 0.78749 0.83223 0.77571 1.21520 1.21701 1.20515 1.19059 0.91255 0.82474 1.42996 0.90350 1.44328 1.08834 0.99938 1.79589 1.21759 0.94070 0.85468 0.98826 1.21997 0.92664 0.96470 0.84861 0.89048 1.45649 1.29573 1.32664 1.26541 1.20107 0.84849 0.80060 0.84474 1.90692 1.25283 1.56782 1.70499 1.21448 1.01236 0.98978 0.96374 1.22503 0.96005 0.96790 0.84727 1.86011 1.51744 1.45478 1.39435 1.19010 0.92406 0.87995 0.92358 1.21268 0.97234 0.98683 1.02676 1.20970 1.00690 0.97141 0.94203 1.17589 0.95634 0.89180 0.94167 1.91486 1.85712 1.55173 1.79836 1.20947 0.95053 0.96364 1.00944 1.20297 1.01897 0.97830 0.94405 1.23727 0.81851 0.96237 0.98063 0.91050 1.86339 1.19139 1.59382 1.72109 1.22072 0.86714 0.91137 0.97759 0.93607 0.94569 0.94940 0.75668 0.87556 0.87685 0.90849 0.90747 0.83972 0.84428 0.84115 0.84046 0.77379 0.94625 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.65 10.67 55.49 0.59 -25.05 16 2 C -0.01 -0.18 5.40 -17.43 -0.09 -0.28 16 3 Si 0.91 21.41 29.56 -169.99 -5.03 16.39 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.23 -6.18 10.24 -15.06 -0.15 -6.33 16 8 H 0.08 2.07 7.85 -52.49 -0.41 1.66 16 9 N -0.60 -14.52 3.39 -169.93 -0.58 -15.09 16 10 C 0.13 2.60 6.98 -3.06 -0.02 2.57 16 11 C 0.15 2.54 3.14 -66.09 -0.21 2.33 16 12 H 0.09 1.57 7.69 -51.93 -0.40 1.17 16 13 N -0.69 -10.82 4.78 -52.03 -0.25 -11.07 16 14 C 0.52 7.66 7.83 -10.99 -0.09 7.57 16 15 O -0.55 -9.74 15.71 5.56 0.09 -9.65 16 16 C -0.14 -1.53 6.07 -27.88 -0.17 -1.69 16 17 C 0.08 0.81 4.03 37.16 0.15 0.96 16 18 O -0.31 -3.39 10.14 -19.59 -0.20 -3.59 16 19 C 0.13 1.31 6.69 -39.24 -0.26 1.05 16 20 C -0.18 -1.72 9.04 -39.44 -0.36 -2.08 16 21 C -0.11 -1.01 10.02 -39.53 -0.40 -1.41 16 22 C 0.05 0.51 7.30 -39.42 -0.29 0.22 16 23 F -0.14 -1.46 17.27 2.25 0.04 -1.42 16 24 C -0.11 -0.95 10.02 -39.53 -0.40 -1.34 16 25 C -0.13 -1.10 9.98 -39.44 -0.39 -1.49 16 26 C 0.06 1.05 4.23 -24.47 -0.10 0.95 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 28 O -0.57 -8.26 12.63 -35.23 -0.45 -8.71 16 29 C 0.15 3.26 5.14 -2.41 -0.01 3.25 16 30 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.03 0.71 8.05 -51.93 -0.42 0.30 16 33 H 0.41 6.05 8.20 -40.82 -0.33 5.71 16 34 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.78 7.61 -51.93 -0.40 0.38 16 37 H 0.07 0.83 7.63 -51.93 -0.40 0.43 16 38 H 0.14 1.26 6.30 -52.49 -0.33 0.93 16 39 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 41 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 42 H 0.38 4.15 9.12 45.56 0.42 4.56 16 43 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 44 H 0.07 1.79 6.92 -51.93 -0.36 1.43 16 LS Contribution 374.05 15.07 5.64 5.64 Total: -1.00 -31.69 374.05 -8.07 -39.77 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.14 Total: 8.54 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -2.79 Total: 4.27 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -0.23 Total: -51.22 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.56 Total: -21.95 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.69 -8.07 -39.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220263136.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.531 kcal (2) G-P(sol) polarization free energy of solvation -31.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds