Wall clock time and date at job start Tue Mar 31 2020 20:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 119.99986 * 2 1 4 4 H 1.48500 * 109.47124 * 274.10932 * 3 2 1 5 5 H 1.48497 * 109.47029 * 34.11042 * 3 2 1 6 6 H 1.48500 * 109.47132 * 154.11263 * 3 2 1 7 7 C 1.38813 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00422 * 189.61283 * 7 2 1 9 9 N 1.36943 * 119.99714 * 9.33601 * 7 2 1 10 10 C 1.47022 * 125.64691 * 190.17164 * 9 7 2 11 11 C 1.54325 * 107.26807 * 181.02790 * 10 9 7 12 12 H 1.08999 * 110.71947 * 140.74211 * 11 10 9 13 13 N 1.46507 * 110.71679 * 263.82772 * 11 10 9 14 14 C 1.34774 * 119.99858 * 273.54727 * 13 11 10 15 15 O 1.21273 * 120.00232 * 0.02562 * 14 13 11 16 16 C 1.50700 * 119.99424 * 180.02562 * 14 13 11 17 17 C 1.52999 * 109.46983 * 180.02562 * 16 14 13 18 18 O 1.42900 * 109.47422 * 179.97438 * 17 16 14 19 19 C 1.35952 * 117.00341 * 180.02562 * 18 17 16 20 20 C 1.38705 * 120.02744 * 359.72421 * 19 18 17 21 21 C 1.38152 * 119.96679 * 179.74828 * 20 19 18 22 22 C 1.38450 * 120.03049 * 0.53042 * 21 20 19 23 23 F 1.35098 * 119.97050 * 179.72627 * 22 21 20 24 24 C 1.38457 * 120.05779 * 359.74111 * 22 21 20 25 25 C 1.38150 * 120.03263 * 359.97438 * 24 22 21 26 26 C 1.55153 * 102.94383 * 22.19397 * 11 10 9 27 27 H 1.08994 * 111.00165 * 82.57266 * 26 11 10 28 28 O 1.42907 * 111.00231 * 206.38496 * 26 11 10 29 29 C 1.47418 * 125.64844 * 9.87031 * 9 7 2 30 30 H 0.97002 * 120.00219 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.88219 * 300.44551 * 10 9 7 32 32 H 1.09001 * 109.87901 * 61.45485 * 10 9 7 33 33 H 0.97005 * 119.99535 * 93.55199 * 13 11 10 34 34 H 1.09001 * 109.47531 * 299.99763 * 16 14 13 35 35 H 1.08994 * 109.47631 * 60.00221 * 16 14 13 36 36 H 1.09000 * 109.47475 * 300.00056 * 17 16 14 37 37 H 1.08999 * 109.47410 * 60.00012 * 17 16 14 38 38 H 1.07996 * 120.01752 * 0.02562 * 20 19 18 39 39 H 1.07998 * 119.98198 * 180.29876 * 21 20 19 40 40 H 1.08007 * 119.97856 * 179.97438 * 24 22 21 41 41 H 1.08001 * 120.01188 * 180.02562 * 25 24 22 42 42 H 0.96696 * 113.99433 * 179.97438 * 28 26 11 43 43 H 1.09005 * 110.36881 * 274.74515 * 29 9 7 44 44 H 1.09001 * 110.37090 * 37.06602 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4107 2.0966 -1.3965 5 1 1.4937 2.6260 0.7851 6 1 3.5885 1.4166 0.6113 7 6 2.0102 -1.2021 0.0005 8 1 3.0789 -1.2087 0.1567 9 7 1.3391 -2.3803 -0.1913 10 6 1.9012 -3.7264 -0.0075 11 6 0.7914 -4.7385 -0.3617 12 1 1.2039 -5.5888 -0.9048 13 7 0.0939 -5.1866 0.8462 14 6 0.5765 -6.2250 1.5570 15 8 1.5884 -6.7881 1.1971 16 6 -0.1414 -6.6861 2.7992 17 6 0.6091 -7.8702 3.4120 18 8 -0.0712 -8.3072 4.5903 19 6 0.4694 -9.3590 5.2610 20 6 1.6272 -9.9609 4.7908 21 6 2.1784 -11.0263 5.4763 22 6 1.5695 -11.5002 6.6258 23 9 2.1064 -12.5456 7.2920 24 6 0.4106 -10.9038 7.0930 25 6 -0.1395 -9.8346 6.4129 26 6 -0.1573 -3.9109 -1.2684 27 1 0.2060 -3.8877 -2.2958 28 8 -1.4921 -4.4182 -1.2113 29 6 -0.0684 -2.5089 -0.6103 30 1 -0.4850 0.8400 0.0004 31 1 2.7550 -3.8652 -0.6707 32 1 2.2113 -3.8602 1.0288 33 1 -0.7154 -4.7359 1.1343 34 1 -0.1815 -5.8695 3.5201 35 1 -1.1549 -6.9925 2.5406 36 1 0.6497 -8.6870 2.6914 37 1 1.6226 -7.5635 3.6708 38 1 2.1002 -9.5940 3.8919 39 1 3.0826 -11.4920 5.1131 40 1 -0.0636 -11.2749 7.9897 41 1 -1.0433 -9.3694 6.7778 42 1 -2.1213 -3.9324 -1.7619 43 1 -0.7287 -2.4509 0.2550 44 1 -0.3212 -1.7340 -1.3340 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220263136.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:45 Heat of formation + Delta-G solvation = -136.606161 kcal Electronic energy + Delta-G solvation = -28257.635859 eV Core-core repulsion = 23896.767991 eV Total energy + Delta-G solvation = -4360.867867 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.83531 -41.36043 -40.89075 -39.37789 -38.23446 -36.63497 -35.33297 -33.73332 -33.02772 -32.16625 -30.40701 -29.92934 -28.83653 -26.55652 -25.62527 -23.88912 -23.00980 -22.34129 -21.71284 -21.19488 -19.56163 -18.97283 -18.52756 -18.26712 -17.68833 -17.61135 -17.46277 -17.08917 -16.66010 -16.54624 -16.03239 -15.78920 -15.66915 -15.29018 -15.03081 -14.78407 -14.58359 -14.48883 -14.26890 -13.94237 -13.86522 -13.77552 -13.67272 -13.17823 -12.94827 -12.80506 -12.74171 -12.71445 -12.62703 -12.05277 -11.92296 -11.80102 -11.74320 -11.70310 -10.99708 -10.82629 -10.71426 -10.20303 -10.07164 -9.14645 -8.91773 -7.91944 -5.27116 0.14459 0.17522 1.46692 1.47251 1.56271 1.59169 1.72668 2.44520 2.52625 2.54860 3.10126 3.27971 3.30876 3.58269 3.65898 3.73932 3.78901 3.81499 3.93114 4.00121 4.02532 4.10857 4.29235 4.31299 4.39481 4.52677 4.57279 4.63359 4.72439 4.78252 4.88628 4.90430 4.93591 5.11392 5.13054 5.22328 5.35233 5.46611 5.51911 5.65635 5.68149 6.14490 6.28320 6.54763 6.86685 7.04534 7.20469 7.69507 8.34038 9.18875 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018892 B = 0.001931 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.718459 B =14493.923059 C =15092.783137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.057 4.057 3 Si 0.976 3.024 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.273 1.273 7 C -0.246 4.246 8 H 0.076 0.924 9 N -0.617 5.617 10 C 0.125 3.875 11 C 0.154 3.846 12 H 0.101 0.899 13 N -0.695 5.695 14 C 0.519 3.481 15 O -0.583 6.583 16 C -0.130 4.130 17 C 0.079 3.921 18 O -0.317 6.317 19 C 0.110 3.890 20 C -0.188 4.188 21 C -0.116 4.116 22 C 0.039 3.961 23 F -0.149 7.149 24 C -0.110 4.110 25 C -0.126 4.126 26 C 0.087 3.913 27 H 0.086 0.914 28 O -0.559 6.559 29 C 0.158 3.842 30 H 0.250 0.750 31 H 0.039 0.961 32 H 0.017 0.983 33 H 0.412 0.588 34 H 0.117 0.883 35 H 0.129 0.871 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.144 0.856 39 H 0.151 0.849 40 H 0.165 0.835 41 H 0.159 0.841 42 H 0.398 0.602 43 H 0.012 0.988 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.015 -19.766 8.054 21.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.251 4.251 3 Si 0.804 3.196 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.197 1.197 7 C -0.375 4.375 8 H 0.094 0.906 9 N -0.345 5.345 10 C -0.001 4.001 11 C 0.047 3.953 12 H 0.119 0.881 13 N -0.345 5.345 14 C 0.306 3.694 15 O -0.464 6.464 16 C -0.170 4.170 17 C 0.004 3.996 18 O -0.231 6.231 19 C 0.065 3.935 20 C -0.206 4.206 21 C -0.135 4.135 22 C 0.020 3.980 23 F -0.128 7.128 24 C -0.128 4.128 25 C -0.145 4.145 26 C 0.026 3.974 27 H 0.104 0.896 28 O -0.366 6.366 29 C 0.032 3.968 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.035 0.965 33 H 0.249 0.751 34 H 0.135 0.865 35 H 0.147 0.853 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.162 0.838 39 H 0.168 0.832 40 H 0.182 0.818 41 H 0.177 0.823 42 H 0.248 0.752 43 H 0.030 0.970 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.233 -20.299 8.269 22.156 hybrid contribution 0.293 1.643 -0.287 1.693 sum -2.940 -18.657 7.982 20.504 Atomic orbital electron populations 1.70091 1.06046 1.25643 1.57236 1.25585 0.96584 1.00813 1.02103 0.85107 0.77756 0.79293 0.77415 1.21172 1.22015 1.19742 1.19349 0.91551 0.83900 1.42703 0.90645 1.44564 1.09768 1.00543 1.79640 1.21836 0.95438 0.84902 0.97920 1.21795 0.91919 0.95764 0.85786 0.88096 1.45652 1.29619 1.32996 1.26249 1.20714 0.84417 0.79203 0.85023 1.90678 1.26677 1.57608 1.71411 1.21389 1.01744 0.99305 0.94544 1.22398 0.95590 0.96744 0.84904 1.85980 1.51823 1.45888 1.39401 1.19275 0.92992 0.88220 0.93059 1.21346 0.97366 0.98954 1.02956 1.21146 1.01171 0.97011 0.94145 1.17823 0.96305 0.89363 0.94496 1.91471 1.85888 1.55490 1.79962 1.21214 0.94442 0.95746 1.01422 1.20544 1.02346 0.97751 0.93815 1.23314 0.83222 0.92771 0.98085 0.89601 1.86316 1.18321 1.59182 1.72815 1.21891 0.85176 0.93378 0.96342 0.94062 0.94286 0.96527 0.75143 0.86492 0.85326 0.90813 0.91601 0.83791 0.83155 0.81775 0.82292 0.75182 0.96994 0.93752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.35 10.67 21.65 0.23 -53.12 16 2 C -0.06 -3.10 5.40 84.86 0.46 -2.64 16 3 Si 0.98 44.27 29.56 68.60 2.03 46.30 16 4 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.25 -13.40 10.24 84.03 0.86 -12.54 16 8 H 0.08 4.03 7.85 -2.91 -0.02 4.01 16 9 N -0.62 -30.25 3.39 -691.55 -2.35 -32.59 16 10 C 0.13 5.19 6.98 86.73 0.61 5.79 16 11 C 0.15 5.18 3.14 46.18 0.14 5.33 16 12 H 0.10 3.29 7.69 -2.39 -0.02 3.27 16 13 N -0.69 -20.82 4.78 -436.92 -2.09 -22.91 16 14 C 0.52 14.67 7.83 87.66 0.69 15.36 16 15 O -0.58 -20.08 15.71 -3.01 -0.05 -20.13 16 16 C -0.13 -2.60 6.07 29.85 0.18 -2.42 16 17 C 0.08 1.61 4.03 71.98 0.29 1.90 16 18 O -0.32 -6.43 10.14 -93.01 -0.94 -7.38 16 19 C 0.11 2.12 6.69 22.49 0.15 2.27 16 20 C -0.19 -3.47 9.04 22.36 0.20 -3.27 16 21 C -0.12 -2.02 10.02 22.30 0.22 -1.80 16 22 C 0.04 0.70 7.30 22.37 0.16 0.87 16 23 F -0.15 -2.90 17.27 44.97 0.78 -2.12 16 24 C -0.11 -1.62 10.02 22.30 0.22 -1.40 16 25 C -0.13 -1.99 9.98 22.36 0.22 -1.76 16 26 C 0.09 2.85 4.23 32.06 0.14 2.98 16 27 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 28 O -0.56 -15.06 12.63 -148.98 -1.88 -16.95 16 29 C 0.16 6.95 5.14 86.93 0.45 7.40 16 30 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 31 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.02 0.74 8.05 -2.39 -0.02 0.72 16 33 H 0.41 11.67 8.20 -92.70 -0.76 10.91 16 34 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.07 1.49 7.61 -2.39 -0.02 1.47 16 37 H 0.07 1.44 7.63 -2.39 -0.02 1.43 16 38 H 0.14 2.52 6.30 -2.91 -0.02 2.51 16 39 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 40 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 41 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 42 H 0.40 7.71 9.12 -74.06 -0.68 7.04 16 43 H 0.01 0.58 8.08 -2.38 -0.02 0.56 16 44 H 0.04 2.20 6.92 -2.39 -0.02 2.18 16 Total: -1.00 -68.19 374.05 0.34 -67.85 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: -0.38 Total: 24.98 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: 4.99 Total: 16.06 kcal Atomic # 7 Polarization: -104.42 SS G_CDS: -4.20 Total: -108.62 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -2.87 Total: -44.45 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.78 Total: -2.12 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -68.19 0.34 -67.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220263136.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.755 kcal (2) G-P(sol) polarization free energy of solvation -68.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds