Wall clock time and date at job start Tue Mar 31 2020 21:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30009 * 127.33040 * 2 1 4 4 O 1.20664 * 112.29930 * 180.02562 * 3 2 1 5 5 C 1.33490 * 113.15455 * 359.71473 * 4 3 2 6 6 C 1.37357 * 106.34397 * 0.45483 * 5 4 3 7 7 C 1.47399 * 128.56871 * 179.85374 * 6 5 4 8 8 O 1.21607 * 120.00044 * 179.67264 * 7 6 5 9 9 N 1.34779 * 119.99759 * 359.67880 * 7 6 5 10 10 C 1.46497 * 119.99668 * 180.02562 * 9 7 6 11 11 H 1.08995 * 110.64704 * 31.84532 * 10 9 7 12 12 C 1.54933 * 110.72238 * 268.49466 * 10 9 7 13 13 N 1.48814 * 103.35067 * 204.33490 * 12 10 9 14 14 C 1.46898 * 111.18587 * 159.50839 * 13 12 10 15 15 C 1.50703 * 109.47507 * 59.27312 * 14 13 12 16 16 O 1.21296 * 119.99416 * 6.14071 * 15 14 13 17 17 N 1.34774 * 120.00292 * 186.13610 * 15 14 13 18 18 C 1.37094 * 119.99583 * 180.02562 * 17 15 14 19 19 H 1.07999 * 120.00525 * 0.02562 * 18 17 15 20 20 C 1.38960 * 119.99524 * 180.02562 * 18 17 15 21 21 N 1.31412 * 119.99916 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99922 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47295 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47291 * 120.00045 * 22 20 18 25 25 H 1.48502 * 109.47342 * 240.00118 * 22 20 18 26 26 C 1.47898 * 105.67397 * 38.97830 * 13 12 10 27 27 C 1.53990 * 107.22942 * 334.90615 * 26 13 12 28 28 H 1.09003 * 110.30484 * 242.21170 * 27 26 13 29 29 O 1.42897 * 110.31254 * 120.14432 * 27 26 13 30 30 H 1.09001 * 109.46840 * 269.95871 * 1 2 3 31 31 H 1.08999 * 109.47041 * 29.95587 * 1 2 3 32 32 H 1.09000 * 109.46946 * 149.96165 * 1 2 3 33 33 H 1.08006 * 126.82790 * 180.30357 * 5 4 3 34 34 H 0.96999 * 120.00145 * 359.97438 * 9 7 6 35 35 H 1.09000 * 110.67099 * 322.66617 * 12 10 9 36 36 H 1.08999 * 110.66718 * 85.62722 * 12 10 9 37 37 H 1.08996 * 109.47159 * 179.28065 * 14 13 12 38 38 H 1.09002 * 109.46850 * 299.27697 * 14 13 12 39 39 H 0.97003 * 119.99922 * 0.02562 * 17 15 14 40 40 H 0.96997 * 119.99530 * 180.02562 * 21 20 18 41 41 H 1.09003 * 109.91291 * 215.44910 * 26 13 12 42 42 H 1.08997 * 109.91654 * 94.36280 * 26 13 12 43 43 H 0.96702 * 113.99939 * 61.44611 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4608 0.7208 -0.0005 5 6 3.6494 -0.6007 0.0052 6 6 2.3992 -1.1696 -0.0006 7 6 2.0402 -2.5992 -0.0009 8 8 0.8706 -2.9323 -0.0006 9 7 3.0081 -3.5371 -0.0015 10 6 2.6512 -4.9579 -0.0023 11 1 1.7172 -5.1192 -0.5406 12 6 2.5545 -5.4997 1.4460 13 7 2.7990 -6.9587 1.2841 14 6 3.2243 -7.5695 2.5506 15 6 2.1569 -7.3589 3.5933 16 8 1.0964 -6.8586 3.2830 17 7 2.3806 -7.7265 4.8705 18 6 1.4092 -7.5353 5.8189 19 1 0.4647 -7.0905 5.5426 20 6 1.6401 -7.9139 7.1359 21 7 2.7896 -8.4546 7.4722 22 14 0.3164 -7.6541 8.4280 23 1 -0.8755 -7.0319 7.7976 24 1 -0.0620 -8.9627 9.0190 25 1 0.8346 -6.7605 9.4949 26 6 3.8575 -7.0750 0.2577 27 6 3.7889 -5.8073 -0.6139 28 1 3.5528 -6.0697 -1.6452 29 8 5.0275 -5.0971 -0.5549 30 1 -0.3633 -0.0007 1.0277 31 1 -0.3633 0.8904 -0.5131 32 1 -0.3633 -0.8896 -0.5144 33 1 4.5968 -1.1194 0.0106 34 1 3.9410 -3.2713 -0.0020 35 1 3.3222 -5.0514 2.0766 36 1 1.5630 -5.3163 1.8599 37 1 3.3830 -8.6377 2.4035 38 1 4.1534 -7.1066 2.8832 39 1 3.2288 -8.1263 5.1187 40 1 2.9505 -8.7192 8.3914 41 1 3.6833 -7.9582 -0.3569 42 1 4.8339 -7.1434 0.7374 43 1 5.7849 -5.5990 -0.8860 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220264178.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:32 Heat of formation + Delta-G solvation = -72.832187 kcal Electronic energy + Delta-G solvation = -29275.676936 eV Core-core repulsion = 24937.494477 eV Total energy + Delta-G solvation = -4338.182459 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -46.00344 -41.35397 -40.32200 -39.35109 -36.74830 -35.89205 -35.58300 -35.46970 -33.39074 -33.20619 -31.41962 -29.82718 -29.12546 -28.06621 -26.27814 -25.43459 -22.78142 -22.39754 -22.00177 -21.50950 -21.02661 -19.90328 -19.45502 -18.81904 -18.52735 -17.74117 -17.60309 -17.10281 -16.61691 -16.59326 -16.32661 -16.03158 -15.76384 -15.61747 -15.19930 -14.99382 -14.67445 -14.34887 -14.29180 -14.21105 -14.12252 -13.63529 -13.48020 -13.40545 -13.08026 -13.00952 -12.74037 -12.43440 -12.41139 -12.39219 -12.14651 -12.03862 -11.50533 -11.32510 -11.07019 -11.01407 -10.84351 -10.31434 -10.17324 -10.01939 -9.37931 -8.49388 -5.97523 0.02995 0.67597 1.33771 1.39332 1.53333 1.72172 2.02668 2.06324 2.18467 2.27130 2.82097 2.95911 3.11407 3.17649 3.28412 3.38186 3.52289 3.69130 3.77597 3.95173 4.07280 4.21147 4.26635 4.38613 4.39744 4.45416 4.52897 4.55282 4.57404 4.70908 4.72779 4.88325 4.93536 5.09293 5.12530 5.27215 5.39039 5.74337 5.89021 6.05968 6.43917 6.58508 6.86706 7.11293 7.12759 7.16253 7.53775 8.10765 8.68282 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010752 B = 0.002873 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.632007 B = 9743.987547 C =11413.629589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.052 3.948 3 N -0.379 5.379 4 O 0.100 5.900 5 C 0.037 3.963 6 C -0.284 4.284 7 C 0.591 3.409 8 O -0.570 6.570 9 N -0.687 5.687 10 C 0.152 3.848 11 H 0.096 0.904 12 C 0.038 3.962 13 N -0.509 5.509 14 C 0.052 3.948 15 C 0.435 3.565 16 O -0.617 6.617 17 N -0.573 5.573 18 C -0.332 4.332 19 H 0.075 0.925 20 C -0.011 4.011 21 N -0.919 5.919 22 Si 0.990 3.010 23 H -0.277 1.277 24 H -0.268 1.268 25 H -0.270 1.270 26 C 0.001 3.999 27 C 0.110 3.890 28 H 0.103 0.897 29 O -0.568 6.568 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.278 0.722 34 H 0.422 0.578 35 H 0.037 0.963 36 H 0.055 0.945 37 H 0.118 0.882 38 H 0.071 0.929 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.108 0.892 42 H 0.077 0.923 43 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.044 9.476 -19.226 24.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 N -0.087 5.087 4 O 0.042 5.958 5 C -0.045 4.045 6 C -0.292 4.292 7 C 0.378 3.622 8 O -0.449 6.449 9 N -0.341 5.341 10 C 0.046 3.954 11 H 0.114 0.886 12 C -0.091 4.091 13 N -0.235 5.235 14 C -0.079 4.079 15 C 0.223 3.777 16 O -0.503 6.503 17 N -0.210 5.210 18 C -0.462 4.462 19 H 0.093 0.907 20 C -0.211 4.211 21 N -0.560 5.560 22 Si 0.813 3.187 23 H -0.202 1.202 24 H -0.193 1.193 25 H -0.195 1.195 26 C -0.126 4.126 27 C 0.050 3.950 28 H 0.121 0.879 29 O -0.378 6.378 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.102 0.898 33 H 0.293 0.707 34 H 0.261 0.739 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.136 0.864 38 H 0.089 0.911 39 H 0.231 0.769 40 H 0.088 0.912 41 H 0.126 0.874 42 H 0.095 0.905 43 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 9.606 10.987 -19.172 24.095 hybrid contribution 0.822 -1.091 1.372 1.936 sum 10.427 9.896 -17.801 22.881 Atomic orbital electron populations 1.20277 0.84641 1.04507 1.04098 1.25177 0.99738 0.86827 0.99240 1.73686 0.89859 1.23810 1.21374 1.84547 1.20778 1.23926 1.66544 1.27266 1.00811 0.82948 0.93487 1.22226 0.94426 0.94407 1.18102 1.17180 0.85215 0.84136 0.75646 1.90816 1.20119 1.82554 1.51457 1.45298 1.10072 1.04694 1.73991 1.21875 0.98751 0.79742 0.95049 0.88643 1.23468 1.00837 0.88086 0.96708 1.64494 1.39919 1.12113 1.06956 1.21978 0.94607 1.02646 0.88670 1.20856 0.89970 0.83127 0.83766 1.90514 1.29348 1.49326 1.81108 1.41913 1.16984 1.55339 1.06814 1.19649 0.97381 1.40025 0.89136 0.90738 1.25985 0.99587 0.96082 0.99398 1.69664 1.23980 1.41802 1.20511 0.84921 0.77725 0.78423 0.77582 1.20167 1.19333 1.19500 1.23900 0.94484 0.99969 0.94277 1.22669 0.83973 0.89159 0.99221 0.87900 1.86231 1.17666 1.45539 1.88378 0.89793 0.88819 0.89765 0.70663 0.73861 0.94457 0.92673 0.86391 0.91142 0.76936 0.91247 0.87371 0.90524 0.73914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.76 10.14 71.24 0.72 -1.04 16 2 C 0.05 1.29 7.58 45.16 0.34 1.63 16 3 N -0.38 -8.89 12.01 -44.78 -0.54 -9.43 16 4 O 0.10 1.79 11.06 77.00 0.85 2.64 16 5 C 0.04 0.48 11.85 67.61 0.80 1.29 16 6 C -0.28 -6.31 6.47 -18.74 -0.12 -6.43 16 7 C 0.59 16.15 7.81 86.66 0.68 16.82 16 8 O -0.57 -20.85 15.34 -4.05 -0.06 -20.92 16 9 N -0.69 -14.82 5.10 -440.13 -2.25 -17.06 16 10 C 0.15 3.81 3.39 46.20 0.16 3.96 16 11 H 0.10 2.80 7.55 -2.39 -0.02 2.79 16 12 C 0.04 1.30 5.28 86.59 0.46 1.76 16 13 N -0.51 -15.76 5.11 -886.82 -4.54 -20.30 16 14 C 0.05 1.76 5.31 85.56 0.45 2.21 16 15 C 0.44 21.05 7.42 87.66 0.65 21.70 16 16 O -0.62 -35.32 13.89 -3.08 -0.04 -35.36 16 17 N -0.57 -29.70 5.29 -306.98 -1.62 -31.32 16 18 C -0.33 -19.24 9.68 84.04 0.81 -18.42 16 19 H 0.07 4.67 7.16 -2.91 -0.02 4.65 16 20 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 21 N -0.92 -49.63 13.05 21.67 0.28 -49.35 16 22 Si 0.99 43.75 29.55 68.60 2.03 45.78 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 26 C 0.00 0.03 6.50 86.45 0.56 0.59 16 27 C 0.11 1.64 4.30 31.47 0.14 1.77 16 28 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 29 O -0.57 -5.40 11.65 -148.98 -1.73 -7.13 16 30 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.08 2.11 7.11 -2.39 -0.02 2.09 16 33 H 0.28 0.33 7.68 -2.91 -0.02 0.30 16 34 H 0.42 6.17 6.43 -92.71 -0.60 5.58 16 35 H 0.04 1.27 8.01 -2.39 -0.02 1.26 16 36 H 0.05 2.54 6.47 -2.39 -0.02 2.53 16 37 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 38 H 0.07 2.07 7.99 -2.39 -0.02 2.05 16 39 H 0.40 19.30 7.90 -92.71 -0.73 18.57 16 40 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 41 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.08 1.11 7.50 -2.39 -0.02 1.09 16 43 H 0.41 0.16 9.11 -74.06 -0.67 -0.51 16 Total: -1.00 -84.26 366.52 -2.40 -86.66 By element: Atomic # 1 Polarization: 30.96 SS G_CDS: -0.90 Total: 30.06 kcal Atomic # 6 Polarization: 19.61 SS G_CDS: 6.12 Total: 25.72 kcal Atomic # 7 Polarization: -118.79 SS G_CDS: -8.66 Total: -127.45 kcal Atomic # 8 Polarization: -59.78 SS G_CDS: -0.99 Total: -60.77 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -84.26 -2.40 -86.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220264178.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.823 kcal (2) G-P(sol) polarization free energy of solvation -84.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds