Wall clock time and date at job start Tue Mar 31 2020 21:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.41262 * 128.08442 * 2 1 4 4 N 1.30122 * 106.59593 * 180.23578 * 3 2 1 5 5 O 1.20887 * 111.97930 * 359.77717 * 4 3 2 6 6 C 1.34641 * 111.47089 * 359.97438 * 5 4 3 7 7 C 1.47510 * 126.94541 * 179.97438 * 6 5 4 8 8 O 1.21581 * 120.00089 * 180.02562 * 7 6 5 9 9 N 1.34775 * 119.99993 * 0.03082 * 7 6 5 10 10 C 1.46503 * 119.99924 * 180.02562 * 9 7 6 11 11 H 1.08996 * 110.64763 * 31.84673 * 10 9 7 12 12 C 1.54933 * 110.87536 * 268.58650 * 10 9 7 13 13 N 1.48814 * 103.35067 * 204.26163 * 12 10 9 14 14 C 1.46898 * 111.18587 * 159.50839 * 13 12 10 15 15 C 1.50703 * 109.47507 * 59.27312 * 14 13 12 16 16 O 1.21296 * 119.99416 * 6.14071 * 15 14 13 17 17 N 1.34774 * 120.00292 * 186.13610 * 15 14 13 18 18 C 1.37094 * 119.99583 * 180.02562 * 17 15 14 19 19 H 1.07999 * 120.00525 * 0.02562 * 18 17 15 20 20 C 1.38960 * 119.99524 * 180.02562 * 18 17 15 21 21 N 1.31412 * 119.99916 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99922 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47258 * 59.99878 * 22 20 18 24 24 H 1.48500 * 109.47258 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47123 * 300.00291 * 22 20 18 26 26 C 1.47898 * 105.67397 * 38.97830 * 13 12 10 27 27 C 1.53990 * 107.22942 * 334.90615 * 26 13 12 28 28 H 1.09003 * 110.30484 * 242.21170 * 27 26 13 29 29 O 1.42894 * 110.31116 * 120.04344 * 27 26 13 30 30 H 1.08996 * 109.47481 * 270.13442 * 1 2 3 31 31 H 1.09003 * 109.46658 * 30.12964 * 1 2 3 32 32 H 1.09000 * 109.47418 * 150.12900 * 1 2 3 33 33 H 1.08006 * 126.70181 * 359.97438 * 3 2 1 34 34 H 0.97003 * 120.00241 * 359.97438 * 9 7 6 35 35 H 1.09000 * 110.67099 * 322.59289 * 12 10 9 36 36 H 1.08999 * 110.66718 * 85.55394 * 12 10 9 37 37 H 1.08996 * 109.47159 * 179.28065 * 14 13 12 38 38 H 1.09002 * 109.46850 * 299.27697 * 14 13 12 39 39 H 0.97003 * 119.99922 * 0.02562 * 17 15 14 40 40 H 0.96997 * 119.99530 * 180.02562 * 21 20 18 41 41 H 1.09003 * 109.91291 * 215.44910 * 26 13 12 42 42 H 1.08997 * 109.91654 * 94.36280 * 26 13 12 43 43 H 0.96703 * 114.00105 * 61.45759 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3783 1.1119 0.0000 4 7 3.5890 0.6352 -0.0051 5 8 3.5994 -0.5736 -0.0039 6 6 2.3507 -1.0771 0.0031 7 6 1.9694 -2.5021 0.0060 8 8 0.7951 -2.8171 0.0120 9 7 2.9226 -3.4548 0.0023 10 6 2.5439 -4.8700 0.0046 11 1 1.6052 -5.0176 -0.5293 12 6 2.4420 -5.4119 1.4526 13 7 2.6618 -6.8745 1.2884 14 6 3.0802 -7.4938 2.5530 15 6 2.0192 -7.2666 3.5989 16 8 0.9664 -6.7483 3.2921 17 7 2.2402 -7.6394 4.8751 18 6 1.2747 -7.4331 5.8263 19 1 0.3370 -6.9724 5.5530 20 6 1.5028 -7.8170 7.1422 21 7 2.6440 -8.3772 7.4749 22 14 0.1871 -7.5367 8.4382 23 1 -1.0462 -8.2717 8.0587 24 1 0.6733 -8.0298 9.7519 25 1 -0.1116 -6.0852 8.5345 26 6 3.7154 -7.0072 0.2590 27 6 3.6656 -5.7376 -0.6110 28 1 3.4223 -5.9948 -1.6419 29 8 4.9153 -5.0470 -0.5527 30 1 -0.3634 0.0024 1.0276 31 1 -0.3633 0.8889 -0.5159 32 1 -0.3634 -0.8911 -0.5118 33 1 2.0948 2.1541 -0.0004 34 1 3.8595 -3.2035 -0.0028 35 1 3.2188 -4.9771 2.0816 36 1 1.4549 -5.2124 1.8694 37 1 3.2206 -8.5644 2.4044 38 1 4.0178 -7.0468 2.8836 39 1 3.0823 -8.0536 5.1205 40 1 2.8030 -8.6455 8.3933 41 1 3.5249 -7.8867 -0.3561 42 1 4.6918 -7.0925 0.7360 43 1 5.6642 -5.5603 -0.8855 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220676317.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:38 Heat of formation + Delta-G solvation = -37.628687 kcal Electronic energy + Delta-G solvation = -29363.402419 eV Core-core repulsion = 25026.746498 eV Total energy + Delta-G solvation = -4336.655920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.24801 -40.32528 -39.03479 -37.91224 -35.74374 -35.19797 -34.34219 -33.84417 -32.59358 -31.29326 -30.37206 -28.74860 -27.95012 -26.50422 -24.52030 -23.96731 -22.68149 -21.46143 -20.95528 -20.64581 -19.21525 -18.93513 -18.00201 -17.91954 -17.59042 -16.51507 -15.91915 -15.83190 -15.53935 -15.17662 -15.01568 -14.62529 -14.36369 -14.28685 -13.94837 -13.84853 -13.45765 -13.44607 -13.27022 -13.16052 -12.88861 -12.82513 -12.05595 -11.91576 -11.66478 -11.52464 -11.51151 -11.37373 -11.11698 -10.82926 -10.64107 -10.44236 -10.42330 -10.36485 -10.20598 -9.72059 -9.48419 -9.17087 -8.48565 -8.08169 -7.94435 -6.41886 -3.82540 0.57873 1.81247 2.36802 2.82427 2.95902 3.20636 3.26259 3.30945 3.82300 3.89157 3.90067 4.01198 4.25280 4.35071 4.44248 4.58420 4.61983 4.77347 4.85166 5.05338 5.07852 5.23888 5.28429 5.37954 5.41282 5.45501 5.58498 5.60940 5.65400 5.79129 5.83163 5.94421 6.02838 6.19897 6.24187 6.49359 7.00412 7.10412 7.23003 7.29843 7.55354 7.78065 7.91763 8.05553 8.61136 9.17876 9.53402 10.05178 10.75818 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010961 B = 0.002896 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.968461 B = 9666.247772 C =11277.780075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.120 4.120 3 C -0.016 4.016 4 N -0.344 5.344 5 O 0.116 5.884 6 C -0.089 4.089 7 C 0.604 3.396 8 O -0.504 6.504 9 N -0.695 5.695 10 C 0.149 3.851 11 H 0.118 0.882 12 C 0.032 3.968 13 N -0.486 5.486 14 C 0.038 3.962 15 C 0.441 3.559 16 O -0.576 6.576 17 N -0.563 5.563 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.274 1.274 26 C 0.001 3.999 27 C 0.088 3.912 28 H 0.077 0.923 29 O -0.565 6.565 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.198 0.802 34 H 0.416 0.584 35 H 0.046 0.954 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.049 0.951 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.087 0.913 42 H 0.057 0.943 43 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.541 11.006 -18.136 21.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C -0.193 4.193 4 N -0.043 5.043 5 O 0.043 5.957 6 C -0.155 4.155 7 C 0.387 3.613 8 O -0.379 6.379 9 N -0.348 5.348 10 C 0.043 3.957 11 H 0.135 0.865 12 C -0.097 4.097 13 N -0.211 5.211 14 C -0.093 4.093 15 C 0.226 3.774 16 O -0.460 6.460 17 N -0.199 5.199 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.758 3.242 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.128 4.128 27 C 0.028 3.972 28 H 0.094 0.906 29 O -0.371 6.371 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.215 0.785 34 H 0.253 0.747 35 H 0.064 0.936 36 H 0.134 0.866 37 H 0.111 0.889 38 H 0.067 0.933 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.106 0.894 42 H 0.076 0.924 43 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 4.419 11.799 -18.051 22.013 hybrid contribution 0.916 -0.236 1.052 1.415 sum 5.335 11.563 -16.999 21.240 Atomic orbital electron populations 1.20353 0.86198 1.04129 1.03763 1.21674 0.99150 0.90227 1.01384 1.25009 0.87750 1.02122 1.04462 1.73756 1.23127 0.91271 1.16153 1.84963 1.28190 1.15483 1.67059 1.24037 0.84636 0.96232 1.10580 1.16513 0.85816 0.81521 0.77453 1.90891 1.17046 1.80334 1.49609 1.45563 1.10310 1.05512 1.73388 1.22141 0.97453 0.78315 0.97770 0.86454 1.23782 1.04598 0.86937 0.94365 1.64601 1.37591 1.12167 1.06757 1.22100 0.96727 1.00694 0.89803 1.19674 0.89098 0.85321 0.83316 1.90515 1.27381 1.47615 1.80451 1.41844 1.17861 1.53918 1.06307 1.19661 0.97983 1.37695 0.87519 0.87912 1.25260 0.97516 0.96848 0.98266 1.69603 1.23475 1.41326 1.19971 0.85920 0.80352 0.78898 0.79080 1.19830 1.20984 1.19902 1.23729 0.95407 0.98262 0.95433 1.22940 0.84223 0.91316 0.98689 0.90555 1.86325 1.17397 1.45486 1.87937 0.89887 0.90790 0.89030 0.78472 0.74686 0.93612 0.86593 0.88911 0.93279 0.77511 0.91820 0.89429 0.92446 0.76615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.79 9.95 36.00 0.36 -0.44 16 2 C -0.12 -1.28 6.37 -103.99 -0.66 -1.95 16 3 C -0.02 -0.15 12.14 -17.13 -0.21 -0.36 16 4 N -0.34 -4.04 12.04 30.46 0.37 -3.67 16 5 O 0.12 1.39 11.04 15.55 0.17 1.56 16 6 C -0.09 -1.08 7.29 -36.31 -0.26 -1.35 16 7 C 0.60 8.21 7.82 -12.48 -0.10 8.11 16 8 O -0.50 -8.16 14.76 5.29 0.08 -8.09 16 9 N -0.70 -8.51 5.11 -53.05 -0.27 -8.78 16 10 C 0.15 1.93 3.38 -66.07 -0.22 1.71 16 11 H 0.12 1.62 7.55 -51.93 -0.39 1.23 16 12 C 0.03 0.53 5.29 -1.74 -0.01 0.52 16 13 N -0.49 -7.81 5.11 -231.65 -1.18 -8.99 16 14 C 0.04 0.67 5.31 -4.98 -0.03 0.65 16 15 C 0.44 10.37 7.42 -10.99 -0.08 10.29 16 16 O -0.58 -15.51 13.89 5.54 0.08 -15.43 16 17 N -0.56 -14.25 5.29 -10.96 -0.06 -14.31 16 18 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 20 C 0.02 0.61 5.50 -17.46 -0.10 0.51 16 21 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 22 Si 0.93 21.20 29.55 -169.99 -5.02 16.17 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 C 0.00 0.01 6.50 -2.76 -0.02 -0.01 16 27 C 0.09 0.86 4.30 -25.38 -0.11 0.75 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 O -0.56 -4.71 11.64 -35.23 -0.41 -5.12 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.97 6.74 -51.93 -0.35 0.62 16 33 H 0.20 1.15 8.06 -52.48 -0.42 0.73 16 34 H 0.42 4.57 7.07 -40.82 -0.29 4.28 16 35 H 0.05 0.79 8.01 -51.93 -0.42 0.37 16 36 H 0.12 2.43 6.47 -51.93 -0.34 2.09 16 37 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 38 H 0.05 0.79 7.99 -51.93 -0.41 0.38 16 39 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 40 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.58 7.50 -51.93 -0.39 0.19 16 43 H 0.38 1.58 9.11 45.56 0.41 1.99 16 LS Contribution 366.31 15.07 5.52 5.52 Total: -1.00 -34.06 366.31 -6.13 -40.19 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -4.54 Total: 14.87 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: -1.58 Total: 9.93 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: -0.42 Total: -59.61 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.08 Total: -27.08 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.06 -6.13 -40.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220676317.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.566 kcal (2) G-P(sol) polarization free energy of solvation -34.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds