Wall clock time and date at job start Tue Mar 31 2020 21:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.41262 * 128.08442 * 2 1 4 4 N 1.30122 * 106.59593 * 180.23578 * 3 2 1 5 5 O 1.20887 * 111.97930 * 359.77717 * 4 3 2 6 6 C 1.34641 * 111.47089 * 359.97438 * 5 4 3 7 7 C 1.47510 * 126.94541 * 179.97438 * 6 5 4 8 8 O 1.21581 * 120.00089 * 180.02562 * 7 6 5 9 9 N 1.34775 * 119.99993 * 0.03082 * 7 6 5 10 10 C 1.46503 * 119.99924 * 180.02562 * 9 7 6 11 11 H 1.08996 * 110.64763 * 31.84673 * 10 9 7 12 12 C 1.54933 * 110.87536 * 268.58650 * 10 9 7 13 13 N 1.48814 * 103.35067 * 204.26163 * 12 10 9 14 14 C 1.46898 * 111.18587 * 159.50839 * 13 12 10 15 15 C 1.50703 * 109.47507 * 59.27312 * 14 13 12 16 16 O 1.21296 * 119.99416 * 6.14071 * 15 14 13 17 17 N 1.34774 * 120.00292 * 186.13610 * 15 14 13 18 18 C 1.37094 * 119.99583 * 180.02562 * 17 15 14 19 19 H 1.07999 * 120.00525 * 0.02562 * 18 17 15 20 20 C 1.38960 * 119.99524 * 180.02562 * 18 17 15 21 21 N 1.31412 * 119.99916 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99922 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47258 * 59.99878 * 22 20 18 24 24 H 1.48500 * 109.47258 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47123 * 300.00291 * 22 20 18 26 26 C 1.47898 * 105.67397 * 38.97830 * 13 12 10 27 27 C 1.53990 * 107.22942 * 334.90615 * 26 13 12 28 28 H 1.09003 * 110.30484 * 242.21170 * 27 26 13 29 29 O 1.42894 * 110.31116 * 120.04344 * 27 26 13 30 30 H 1.08996 * 109.47481 * 270.13442 * 1 2 3 31 31 H 1.09003 * 109.46658 * 30.12964 * 1 2 3 32 32 H 1.09000 * 109.47418 * 150.12900 * 1 2 3 33 33 H 1.08006 * 126.70181 * 359.97438 * 3 2 1 34 34 H 0.97003 * 120.00241 * 359.97438 * 9 7 6 35 35 H 1.09000 * 110.67099 * 322.59289 * 12 10 9 36 36 H 1.08999 * 110.66718 * 85.55394 * 12 10 9 37 37 H 1.08996 * 109.47159 * 179.28065 * 14 13 12 38 38 H 1.09002 * 109.46850 * 299.27697 * 14 13 12 39 39 H 0.97003 * 119.99922 * 0.02562 * 17 15 14 40 40 H 0.96997 * 119.99530 * 180.02562 * 21 20 18 41 41 H 1.09003 * 109.91291 * 215.44910 * 26 13 12 42 42 H 1.08997 * 109.91654 * 94.36280 * 26 13 12 43 43 H 0.96703 * 114.00105 * 61.45759 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3783 1.1119 0.0000 4 7 3.5890 0.6352 -0.0051 5 8 3.5994 -0.5736 -0.0039 6 6 2.3507 -1.0771 0.0031 7 6 1.9694 -2.5021 0.0060 8 8 0.7951 -2.8171 0.0120 9 7 2.9226 -3.4548 0.0023 10 6 2.5439 -4.8700 0.0046 11 1 1.6052 -5.0176 -0.5293 12 6 2.4420 -5.4119 1.4526 13 7 2.6618 -6.8745 1.2884 14 6 3.0802 -7.4938 2.5530 15 6 2.0192 -7.2666 3.5989 16 8 0.9664 -6.7483 3.2921 17 7 2.2402 -7.6394 4.8751 18 6 1.2747 -7.4331 5.8263 19 1 0.3370 -6.9724 5.5530 20 6 1.5028 -7.8170 7.1422 21 7 2.6440 -8.3772 7.4749 22 14 0.1871 -7.5367 8.4382 23 1 -1.0462 -8.2717 8.0587 24 1 0.6733 -8.0298 9.7519 25 1 -0.1116 -6.0852 8.5345 26 6 3.7154 -7.0072 0.2590 27 6 3.6656 -5.7376 -0.6110 28 1 3.4223 -5.9948 -1.6419 29 8 4.9153 -5.0470 -0.5527 30 1 -0.3634 0.0024 1.0276 31 1 -0.3633 0.8889 -0.5159 32 1 -0.3634 -0.8911 -0.5118 33 1 2.0948 2.1541 -0.0004 34 1 3.8595 -3.2035 -0.0028 35 1 3.2188 -4.9771 2.0816 36 1 1.4549 -5.2124 1.8694 37 1 3.2206 -8.5644 2.4044 38 1 4.0178 -7.0468 2.8836 39 1 3.0823 -8.0536 5.1205 40 1 2.8030 -8.6455 8.3933 41 1 3.5249 -7.8867 -0.3561 42 1 4.6918 -7.0925 0.7360 43 1 5.6642 -5.5603 -0.8855 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220676317.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:37 Heat of formation + Delta-G solvation = -68.232763 kcal Electronic energy + Delta-G solvation = -29364.729511 eV Core-core repulsion = 25026.746498 eV Total energy + Delta-G solvation = -4337.983013 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -46.09249 -41.42254 -40.39616 -39.41319 -36.77147 -36.09517 -35.85355 -35.34072 -33.50820 -33.29184 -31.56553 -29.65458 -28.94360 -28.02049 -26.14109 -25.06506 -23.58238 -22.60872 -21.85323 -21.69178 -21.02474 -19.91334 -19.86124 -18.87171 -18.52518 -17.75327 -17.32616 -16.87113 -16.60802 -16.58141 -16.32634 -16.01107 -15.76933 -15.65510 -15.17361 -15.06910 -14.62377 -14.38685 -14.25600 -14.19979 -14.16624 -13.64760 -13.61313 -13.41873 -13.09586 -13.01479 -12.74926 -12.45523 -12.42681 -12.33970 -12.14152 -12.06396 -11.52148 -11.49029 -11.46666 -11.09582 -10.65085 -10.31240 -10.21107 -10.02061 -9.39961 -8.48377 -5.96850 -0.36269 1.01894 1.37842 1.39600 1.40427 1.50627 1.78874 2.00808 2.03288 2.27454 2.81899 3.07372 3.14847 3.18537 3.36618 3.49155 3.56314 3.66583 3.69885 3.92552 4.04693 4.18612 4.25918 4.27890 4.39105 4.43657 4.52405 4.68632 4.71242 4.77255 4.82927 4.89894 4.92196 5.05334 5.15351 5.27282 5.39091 5.72151 5.87178 6.05103 6.21345 6.58900 6.75907 6.93563 6.98393 7.11400 7.54098 8.10706 8.68911 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010961 B = 0.002896 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.968461 B = 9666.247772 C =11277.780075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.119 4.119 3 C 0.001 3.999 4 N -0.362 5.362 5 O 0.106 5.894 6 C -0.108 4.108 7 C 0.602 3.398 8 O -0.538 6.538 9 N -0.685 5.685 10 C 0.150 3.850 11 H 0.106 0.894 12 C 0.037 3.963 13 N -0.506 5.506 14 C 0.051 3.949 15 C 0.436 3.564 16 O -0.615 6.615 17 N -0.573 5.573 18 C -0.334 4.334 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.920 5.920 22 Si 0.991 3.009 23 H -0.271 1.271 24 H -0.268 1.268 25 H -0.274 1.274 26 C 0.002 3.998 27 C 0.107 3.893 28 H 0.107 0.893 29 O -0.572 6.572 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.237 0.763 34 H 0.423 0.577 35 H 0.034 0.966 36 H 0.061 0.939 37 H 0.119 0.881 38 H 0.068 0.932 39 H 0.396 0.604 40 H 0.278 0.722 41 H 0.112 0.888 42 H 0.074 0.926 43 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.944 11.506 -19.269 23.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.124 4.124 3 C -0.177 4.177 4 N -0.063 5.063 5 O 0.036 5.964 6 C -0.174 4.174 7 C 0.386 3.614 8 O -0.416 6.416 9 N -0.337 5.337 10 C 0.044 3.956 11 H 0.124 0.876 12 C -0.092 4.092 13 N -0.231 5.231 14 C -0.080 4.080 15 C 0.223 3.777 16 O -0.501 6.501 17 N -0.210 5.210 18 C -0.464 4.464 19 H 0.095 0.905 20 C -0.211 4.211 21 N -0.561 5.561 22 Si 0.814 3.186 23 H -0.196 1.196 24 H -0.193 1.193 25 H -0.199 1.199 26 C -0.126 4.126 27 C 0.047 3.953 28 H 0.125 0.875 29 O -0.382 6.382 30 H 0.101 0.899 31 H 0.126 0.874 32 H 0.091 0.909 33 H 0.254 0.746 34 H 0.262 0.738 35 H 0.052 0.948 36 H 0.080 0.920 37 H 0.137 0.863 38 H 0.086 0.914 39 H 0.230 0.770 40 H 0.088 0.912 41 H 0.130 0.870 42 H 0.092 0.908 43 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 5.900 12.258 -19.207 23.537 hybrid contribution 0.488 -0.334 1.362 1.484 sum 6.388 11.924 -17.846 22.393 Atomic orbital electron populations 1.20406 0.85191 1.04836 1.03899 1.22048 0.99960 0.90266 1.00142 1.25598 0.86497 1.03437 1.02137 1.73741 1.24302 0.91168 1.17134 1.84950 1.27896 1.15747 1.67852 1.23897 0.85434 0.95829 1.12192 1.16738 0.85515 0.82356 0.76798 1.90870 1.18368 1.81079 1.51297 1.45493 1.10481 1.05153 1.72587 1.22011 0.99061 0.79111 0.95433 0.87612 1.23487 1.01069 0.88194 0.96466 1.64521 1.40502 1.11225 1.06860 1.21988 0.94718 1.02582 0.88725 1.20810 0.89850 0.83259 0.83756 1.90502 1.29647 1.48791 1.81199 1.41910 1.17644 1.54665 1.06821 1.19604 0.98163 1.39498 0.89096 0.90538 1.26012 0.99576 0.96049 0.99482 1.69659 1.24473 1.41212 1.20713 0.85024 0.77870 0.78657 0.77010 1.19638 1.19262 1.19923 1.23905 0.94559 0.99866 0.94264 1.22745 0.83762 0.89356 0.99484 0.87516 1.86288 1.17645 1.45955 1.88290 0.89942 0.87439 0.90933 0.74623 0.73799 0.94792 0.92005 0.86282 0.91386 0.76987 0.91248 0.87025 0.90751 0.73983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.51 9.95 71.23 0.71 -0.80 16 2 C -0.12 -2.47 6.37 -19.45 -0.12 -2.59 16 3 C 0.00 0.02 12.14 85.69 1.04 1.06 16 4 N -0.36 -8.07 12.04 -58.56 -0.71 -8.78 16 5 O 0.11 2.50 11.04 65.84 0.73 3.23 16 6 C -0.11 -2.66 7.29 24.39 0.18 -2.48 16 7 C 0.60 17.05 7.82 86.69 0.68 17.73 16 8 O -0.54 -18.58 14.76 -3.97 -0.06 -18.64 16 9 N -0.68 -17.02 5.11 -440.03 -2.25 -19.27 16 10 C 0.15 3.91 3.38 46.20 0.16 4.07 16 11 H 0.11 3.03 7.55 -2.39 -0.02 3.01 16 12 C 0.04 1.29 5.29 86.59 0.46 1.75 16 13 N -0.51 -15.95 5.11 -886.82 -4.54 -20.49 16 14 C 0.05 1.76 5.31 85.56 0.45 2.21 16 15 C 0.44 21.18 7.42 87.66 0.65 21.83 16 16 O -0.62 -35.02 13.89 -3.08 -0.04 -35.07 16 17 N -0.57 -29.90 5.29 -306.98 -1.62 -31.52 16 18 C -0.33 -19.36 9.68 84.04 0.81 -18.54 16 19 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 20 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 21 N -0.92 -50.08 13.05 21.67 0.28 -49.80 16 22 Si 0.99 43.72 29.55 68.60 2.03 45.75 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 25 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 26 C 0.00 0.03 6.50 86.45 0.56 0.60 16 27 C 0.11 1.79 4.30 31.47 0.14 1.93 16 28 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 29 O -0.57 -7.75 11.64 -148.98 -1.73 -9.49 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.58 6.74 -2.39 -0.02 1.56 16 33 H 0.24 1.89 8.06 -2.91 -0.02 1.87 16 34 H 0.42 9.15 7.07 -92.71 -0.66 8.49 16 35 H 0.03 1.22 8.01 -2.39 -0.02 1.20 16 36 H 0.06 2.82 6.47 -2.39 -0.02 2.81 16 37 H 0.12 3.49 8.14 -2.39 -0.02 3.47 16 38 H 0.07 2.09 7.99 -2.39 -0.02 2.07 16 39 H 0.40 19.51 7.90 -92.71 -0.73 18.78 16 40 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 41 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.07 1.21 7.50 -2.39 -0.02 1.19 16 43 H 0.41 1.66 9.11 -74.06 -0.67 0.98 16 Total: -1.00 -78.59 366.31 -2.69 -81.28 By element: Atomic # 1 Polarization: 37.15 SS G_CDS: -0.96 Total: 36.19 kcal Atomic # 6 Polarization: 20.43 SS G_CDS: 6.18 Total: 26.60 kcal Atomic # 7 Polarization: -121.02 SS G_CDS: -8.83 Total: -129.85 kcal Atomic # 8 Polarization: -58.85 SS G_CDS: -1.11 Total: -59.96 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -78.59 -2.69 -81.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220676317.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.048 kcal (2) G-P(sol) polarization free energy of solvation -78.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds