Wall clock time and date at job start Tue Mar 31 2020 20:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00382 * 2 1 4 4 H 1.48497 * 109.46879 * 274.13968 * 3 2 1 5 5 H 1.48505 * 109.46839 * 34.13926 * 3 2 1 6 6 H 1.48499 * 109.47152 * 154.13682 * 3 2 1 7 7 C 1.38821 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00043 * 170.41207 * 7 2 1 9 9 N 1.36937 * 119.99482 * 350.41731 * 7 2 1 10 10 C 1.47021 * 125.64498 * 169.95225 * 9 7 2 11 11 C 1.54325 * 107.27240 * 178.97675 * 10 9 7 12 12 H 1.08996 * 110.71866 * 96.17222 * 11 10 9 13 13 N 1.46508 * 110.72069 * 219.44508 * 11 10 9 14 14 C 1.34774 * 119.99616 * 268.52167 * 13 11 10 15 15 O 1.21280 * 120.00571 * 359.97438 * 14 13 11 16 16 C 1.50699 * 119.99603 * 180.02562 * 14 13 11 17 17 C 1.53000 * 109.47172 * 179.97438 * 16 14 13 18 18 O 1.42898 * 109.47032 * 179.97438 * 17 16 14 19 19 C 1.35954 * 116.99839 * 180.02562 * 18 17 16 20 20 C 1.38664 * 120.06397 * 359.97438 * 19 18 17 21 21 C 1.38182 * 119.97130 * 179.97438 * 20 19 18 22 22 C 1.38265 * 120.09333 * 0.02929 * 21 20 19 23 23 C 1.38248 * 120.12651 * 359.97438 * 22 21 20 24 24 C 1.38331 * 120.03473 * 359.70819 * 23 22 21 25 25 F 1.35102 * 120.05602 * 180.27369 * 24 23 22 26 26 C 1.55154 * 102.94030 * 337.80748 * 11 10 9 27 27 H 1.09000 * 111.00394 * 153.61564 * 26 11 10 28 28 O 1.42898 * 111.00778 * 277.42543 * 26 11 10 29 29 C 1.47525 * 125.63986 * 349.99229 * 9 7 2 30 30 H 0.96998 * 120.00295 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.88452 * 59.55710 * 10 9 7 32 32 H 1.08994 * 110.01377 * 298.46776 * 10 9 7 33 33 H 0.96997 * 119.99428 * 88.52196 * 13 11 10 34 34 H 1.08996 * 109.47311 * 300.00005 * 16 14 13 35 35 H 1.09011 * 109.47024 * 60.00078 * 16 14 13 36 36 H 1.08996 * 109.47344 * 300.00398 * 17 16 14 37 37 H 1.08998 * 109.46755 * 59.99995 * 17 16 14 38 38 H 1.08002 * 120.01393 * 0.02562 * 20 19 18 39 39 H 1.08004 * 119.95541 * 180.02562 * 21 20 19 40 40 H 1.08004 * 119.93501 * 179.97438 * 22 21 20 41 41 H 1.08008 * 119.98529 * 179.97438 * 23 22 21 42 42 H 0.96702 * 114.00700 * 176.81829 * 28 26 11 43 43 H 1.09003 * 110.37039 * 85.27501 * 29 9 7 44 44 H 1.08995 * 110.41110 * 322.91902 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4102 2.0968 -1.3964 5 1 1.4942 2.6258 0.7858 6 1 3.5888 1.4164 0.6107 7 6 2.0103 -1.2022 0.0005 8 1 3.0790 -1.2088 -0.1552 9 7 1.3399 -2.3797 0.1985 10 6 1.9020 -3.7263 0.0192 11 6 0.7932 -4.7374 0.3794 12 1 0.2727 -5.0746 -0.5169 13 7 1.3487 -5.8750 1.1169 14 6 1.7620 -6.9720 0.4519 15 8 1.6737 -7.0178 -0.7568 16 6 2.3328 -8.1424 1.2105 17 6 2.7208 -9.2478 0.2264 18 8 3.2626 -10.3573 0.9457 19 6 3.6605 -11.4320 0.2143 20 6 3.5316 -11.4189 -1.1663 21 6 3.9372 -12.5121 -1.9079 22 6 4.4710 -13.6196 -1.2752 23 6 4.6012 -13.6369 0.1010 24 6 4.2030 -12.5428 0.8480 25 9 4.3352 -12.5571 2.1925 26 6 -0.1542 -3.9064 1.2845 27 1 -1.1722 -4.2938 1.2444 28 8 0.3244 -3.8702 2.6305 29 6 -0.0663 -2.5069 0.6262 30 1 -0.4850 0.8400 -0.0004 31 1 2.7571 -3.8623 0.6813 32 1 2.2097 -3.8672 -1.0169 33 1 1.4189 -5.8385 2.0836 34 1 3.2156 -7.8214 1.7633 35 1 1.5860 -8.5227 1.9076 36 1 1.8377 -9.5687 -0.3261 37 1 3.4674 -8.8677 -0.4709 38 1 3.1152 -10.5544 -1.6619 39 1 3.8370 -12.5015 -2.9832 40 1 4.7867 -14.4728 -1.8572 41 1 5.0181 -14.5034 0.5930 42 1 -0.2085 -3.3223 3.2229 43 1 -0.7315 -2.4505 -0.2355 44 1 -0.3151 -1.7309 1.3500 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220900799.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:51 Heat of formation + Delta-G solvation = -111.499468 kcal Electronic energy + Delta-G solvation = -28315.958651 eV Core-core repulsion = 23956.179491 eV Total energy + Delta-G solvation = -4359.779159 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.03143 -40.43856 -39.73720 -38.09897 -37.64758 -34.80102 -34.04662 -32.51544 -31.60038 -31.05225 -29.87634 -28.55497 -27.17995 -25.21848 -24.22258 -22.87514 -22.38318 -20.79000 -20.33353 -19.86474 -18.87932 -17.58838 -17.31871 -16.95239 -16.80678 -16.66659 -16.50543 -15.74437 -15.44788 -15.27252 -14.87151 -14.77286 -14.71922 -14.28734 -14.12616 -13.86417 -13.18308 -13.09961 -13.08019 -12.89916 -12.58605 -12.37196 -12.20456 -11.88772 -11.87036 -11.40419 -11.37340 -11.08599 -11.05634 -10.86278 -10.69161 -10.47492 -10.16233 -9.88258 -9.84298 -9.33049 -9.32132 -8.80485 -8.66304 -8.54774 -6.85841 -5.81266 -3.12913 0.75262 0.89255 2.51142 2.65804 3.21530 3.36666 3.42184 3.43705 3.47495 3.91192 4.32042 4.42098 4.45304 4.51954 4.60598 4.69125 4.79733 4.84731 4.91429 5.09801 5.19827 5.29394 5.30073 5.42316 5.46425 5.47893 5.62045 5.65854 5.67964 5.81456 5.85587 5.97750 6.01751 6.19829 6.28837 6.45131 6.65956 6.86788 6.95778 7.22248 7.36258 7.66336 7.69292 8.02389 8.19267 8.31696 9.12151 9.74058 10.39791 11.32286 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024641 B = 0.001867 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.038111 B =14992.854810 C =15350.228328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.224 4.224 8 H 0.077 0.923 9 N -0.595 5.595 10 C 0.131 3.869 11 C 0.142 3.858 12 H 0.104 0.896 13 N -0.703 5.703 14 C 0.516 3.484 15 O -0.548 6.548 16 C -0.140 4.140 17 C 0.075 3.925 18 O -0.310 6.310 19 C 0.104 3.896 20 C -0.181 4.181 21 C -0.088 4.088 22 C -0.133 4.133 23 C -0.118 4.118 24 C 0.065 3.935 25 F -0.133 7.133 26 C 0.066 3.934 27 H 0.061 0.939 28 O -0.562 6.562 29 C 0.148 3.852 30 H 0.253 0.747 31 H 0.029 0.971 32 H 0.028 0.972 33 H 0.410 0.590 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.143 0.857 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.141 0.859 42 H 0.380 0.620 43 H 0.037 0.963 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.723 -25.357 2.121 25.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.353 4.353 8 H 0.094 0.906 9 N -0.322 5.322 10 C 0.004 3.996 11 C 0.037 3.963 12 H 0.122 0.878 13 N -0.354 5.354 14 C 0.302 3.698 15 O -0.426 6.426 16 C -0.180 4.180 17 C -0.001 4.001 18 O -0.224 6.224 19 C 0.057 3.943 20 C -0.200 4.200 21 C -0.107 4.107 22 C -0.151 4.151 23 C -0.137 4.137 24 C 0.045 3.955 25 F -0.112 7.112 26 C 0.005 3.995 27 H 0.078 0.922 28 O -0.368 6.368 29 C 0.023 3.977 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.246 0.754 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.160 0.840 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.159 0.841 42 H 0.227 0.773 43 H 0.055 0.945 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.073 -25.497 1.263 25.852 hybrid contribution -0.013 1.454 0.647 1.592 sum 4.060 -24.043 1.909 24.458 Atomic orbital electron populations 1.69911 1.04976 1.25284 1.56829 1.24809 0.95681 0.97850 1.02137 0.86089 0.78750 0.83296 0.77553 1.21577 1.21604 1.20587 1.19035 0.91223 0.82606 1.42387 0.90559 1.44288 1.09034 0.99727 1.79154 1.21596 0.94410 0.85615 0.97989 1.22160 0.94937 0.84688 0.94513 0.87849 1.45788 1.62871 1.15316 1.11474 1.20192 0.78040 0.83612 0.87981 1.90721 1.55796 1.82011 1.14062 1.21455 1.03869 0.93349 0.99348 1.22526 0.99191 0.84194 0.94149 1.86043 1.76461 1.24032 1.35821 1.19001 0.96970 0.87524 0.90796 1.21336 1.05448 1.01440 0.91791 1.21074 0.96690 0.92478 1.00422 1.20946 1.01465 0.99211 0.93462 1.21025 1.00983 0.97136 0.94566 1.17025 1.06224 0.94594 0.77650 1.91506 1.94072 1.96750 1.28854 1.23612 0.94719 0.98691 0.82462 0.92150 1.86227 1.58100 1.72869 1.19645 1.22099 0.86897 0.91043 0.97705 0.93663 0.95271 0.95393 0.75416 0.87549 0.87683 0.90707 0.90625 0.83976 0.84917 0.84860 0.84130 0.77253 0.94477 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.40 10.68 55.49 0.59 -25.81 16 2 C -0.01 -0.24 5.40 -17.43 -0.09 -0.33 16 3 Si 0.91 21.93 29.56 -169.99 -5.03 16.90 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.22 -6.25 10.24 -15.06 -0.15 -6.40 16 8 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 9 N -0.60 -15.08 3.40 -169.99 -0.58 -15.66 16 10 C 0.13 2.84 6.99 -3.06 -0.02 2.82 16 11 C 0.14 2.52 3.20 -66.09 -0.21 2.31 16 12 H 0.10 1.89 7.55 -51.93 -0.39 1.50 16 13 N -0.70 -10.15 5.07 -52.03 -0.26 -10.42 16 14 C 0.52 7.19 7.83 -10.99 -0.09 7.10 16 15 O -0.55 -9.48 15.63 5.56 0.09 -9.39 16 16 C -0.14 -1.42 6.07 -27.88 -0.17 -1.59 16 17 C 0.07 0.79 4.03 37.16 0.15 0.94 16 18 O -0.31 -3.60 10.00 -19.60 -0.20 -3.79 16 19 C 0.10 1.13 6.69 -39.17 -0.26 0.86 16 20 C -0.18 -1.64 9.04 -39.44 -0.36 -2.00 16 21 C -0.09 -0.64 10.04 -39.59 -0.40 -1.04 16 22 C -0.13 -0.88 10.04 -39.57 -0.40 -1.27 16 23 C -0.12 -0.92 10.02 -39.54 -0.40 -1.32 16 24 C 0.06 0.68 7.31 -39.30 -0.29 0.40 16 25 F -0.13 -1.59 17.11 2.25 0.04 -1.55 16 26 C 0.07 1.14 4.28 -24.58 -0.11 1.03 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 O -0.56 -8.91 12.24 -35.23 -0.43 -9.34 16 29 C 0.15 3.37 5.16 -2.47 -0.01 3.36 16 30 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.03 0.64 8.03 -51.93 -0.42 0.23 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.41 5.27 7.59 -40.82 -0.31 4.96 16 34 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.10 0.89 8.14 -51.92 -0.42 0.46 16 36 H 0.07 0.77 7.62 -51.93 -0.40 0.37 16 37 H 0.08 0.81 7.62 -51.93 -0.40 0.42 16 38 H 0.14 1.19 6.30 -52.49 -0.33 0.86 16 39 H 0.13 0.66 8.06 -52.48 -0.42 0.23 16 40 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 41 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 42 H 0.38 4.78 9.12 45.56 0.42 5.20 16 43 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 44 H 0.08 1.93 6.94 -51.93 -0.36 1.57 16 LS Contribution 373.11 15.07 5.62 5.62 Total: -1.00 -33.43 373.11 -8.07 -41.50 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -5.11 Total: 7.07 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -2.80 Total: 4.86 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: -0.25 Total: -51.88 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.54 Total: -22.52 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.43 -8.07 -41.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220900799.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.999 kcal (2) G-P(sol) polarization free energy of solvation -33.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds