Wall clock time and date at job start Tue Mar 31 2020 20:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00382 * 2 1 4 4 H 1.48497 * 109.46879 * 274.13968 * 3 2 1 5 5 H 1.48505 * 109.46839 * 34.13926 * 3 2 1 6 6 H 1.48499 * 109.47152 * 154.13682 * 3 2 1 7 7 C 1.38821 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00043 * 170.41207 * 7 2 1 9 9 N 1.36937 * 119.99482 * 350.41731 * 7 2 1 10 10 C 1.47021 * 125.64498 * 169.95225 * 9 7 2 11 11 C 1.54325 * 107.27240 * 178.97675 * 10 9 7 12 12 H 1.08996 * 110.71866 * 96.17222 * 11 10 9 13 13 N 1.46508 * 110.72069 * 219.44508 * 11 10 9 14 14 C 1.34774 * 119.99616 * 268.52167 * 13 11 10 15 15 O 1.21280 * 120.00571 * 359.97438 * 14 13 11 16 16 C 1.50699 * 119.99603 * 180.02562 * 14 13 11 17 17 C 1.53000 * 109.47172 * 179.97438 * 16 14 13 18 18 O 1.42898 * 109.47032 * 179.97438 * 17 16 14 19 19 C 1.35954 * 116.99839 * 180.02562 * 18 17 16 20 20 C 1.38664 * 120.06397 * 359.97438 * 19 18 17 21 21 C 1.38182 * 119.97130 * 179.97438 * 20 19 18 22 22 C 1.38265 * 120.09333 * 0.02929 * 21 20 19 23 23 C 1.38248 * 120.12651 * 359.97438 * 22 21 20 24 24 C 1.38331 * 120.03473 * 359.70819 * 23 22 21 25 25 F 1.35102 * 120.05602 * 180.27369 * 24 23 22 26 26 C 1.55154 * 102.94030 * 337.80748 * 11 10 9 27 27 H 1.09000 * 111.00394 * 153.61564 * 26 11 10 28 28 O 1.42898 * 111.00778 * 277.42543 * 26 11 10 29 29 C 1.47525 * 125.63986 * 349.99229 * 9 7 2 30 30 H 0.96998 * 120.00295 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.88452 * 59.55710 * 10 9 7 32 32 H 1.08994 * 110.01377 * 298.46776 * 10 9 7 33 33 H 0.96997 * 119.99428 * 88.52196 * 13 11 10 34 34 H 1.08996 * 109.47311 * 300.00005 * 16 14 13 35 35 H 1.09011 * 109.47024 * 60.00078 * 16 14 13 36 36 H 1.08996 * 109.47344 * 300.00398 * 17 16 14 37 37 H 1.08998 * 109.46755 * 59.99995 * 17 16 14 38 38 H 1.08002 * 120.01393 * 0.02562 * 20 19 18 39 39 H 1.08004 * 119.95541 * 180.02562 * 21 20 19 40 40 H 1.08004 * 119.93501 * 179.97438 * 22 21 20 41 41 H 1.08008 * 119.98529 * 179.97438 * 23 22 21 42 42 H 0.96702 * 114.00700 * 176.81829 * 28 26 11 43 43 H 1.09003 * 110.37039 * 85.27501 * 29 9 7 44 44 H 1.08995 * 110.41110 * 322.91902 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4102 2.0968 -1.3964 5 1 1.4942 2.6258 0.7858 6 1 3.5888 1.4164 0.6107 7 6 2.0103 -1.2022 0.0005 8 1 3.0790 -1.2088 -0.1552 9 7 1.3399 -2.3797 0.1985 10 6 1.9020 -3.7263 0.0192 11 6 0.7932 -4.7374 0.3794 12 1 0.2727 -5.0746 -0.5169 13 7 1.3487 -5.8750 1.1169 14 6 1.7620 -6.9720 0.4519 15 8 1.6737 -7.0178 -0.7568 16 6 2.3328 -8.1424 1.2105 17 6 2.7208 -9.2478 0.2264 18 8 3.2626 -10.3573 0.9457 19 6 3.6605 -11.4320 0.2143 20 6 3.5316 -11.4189 -1.1663 21 6 3.9372 -12.5121 -1.9079 22 6 4.4710 -13.6196 -1.2752 23 6 4.6012 -13.6369 0.1010 24 6 4.2030 -12.5428 0.8480 25 9 4.3352 -12.5571 2.1925 26 6 -0.1542 -3.9064 1.2845 27 1 -1.1722 -4.2938 1.2444 28 8 0.3244 -3.8702 2.6305 29 6 -0.0663 -2.5069 0.6262 30 1 -0.4850 0.8400 -0.0004 31 1 2.7571 -3.8623 0.6813 32 1 2.2097 -3.8672 -1.0169 33 1 1.4189 -5.8385 2.0836 34 1 3.2156 -7.8214 1.7633 35 1 1.5860 -8.5227 1.9076 36 1 1.8377 -9.5687 -0.3261 37 1 3.4674 -8.8677 -0.4709 38 1 3.1152 -10.5544 -1.6619 39 1 3.8370 -12.5015 -2.9832 40 1 4.7867 -14.4728 -1.8572 41 1 5.0181 -14.5034 0.5930 42 1 -0.2085 -3.3223 3.2229 43 1 -0.7315 -2.4505 -0.2355 44 1 -0.3151 -1.7309 1.3500 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220900799.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:50 Heat of formation + Delta-G solvation = -136.031401 kcal Electronic energy + Delta-G solvation = -28317.022435 eV Core-core repulsion = 23956.179491 eV Total energy + Delta-G solvation = -4360.842944 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.82843 -41.33698 -40.82873 -39.47437 -38.43788 -36.37509 -35.48099 -33.78368 -33.10067 -31.67172 -30.69914 -30.17296 -28.80765 -26.65915 -25.56601 -23.56353 -23.18126 -22.43443 -21.67734 -21.23956 -19.68051 -19.15275 -18.37962 -18.13826 -17.61633 -17.59497 -17.58861 -16.92496 -16.74380 -16.60835 -16.00227 -15.90525 -15.67369 -15.41295 -15.39548 -14.93052 -14.65186 -14.46484 -14.36088 -13.94559 -13.83854 -13.61590 -13.18388 -13.01522 -12.95872 -12.82061 -12.75107 -12.54175 -12.30461 -12.14791 -12.05126 -11.97926 -11.87736 -11.84961 -11.08193 -10.83505 -10.75724 -10.12222 -9.95520 -9.24856 -8.89658 -7.92485 -5.26800 0.11844 0.25263 1.45109 1.45710 1.52509 1.56008 1.63368 2.37308 2.50017 2.59836 3.17906 3.22985 3.28115 3.53608 3.62000 3.78245 3.81814 3.87510 3.90215 3.94556 4.04076 4.19652 4.29000 4.32020 4.37480 4.46032 4.52707 4.67185 4.71705 4.74070 4.85303 4.96930 4.98503 5.09412 5.25713 5.36104 5.37002 5.43245 5.47272 5.60334 5.68702 6.14406 6.21809 6.53465 6.87135 7.04522 7.19155 7.69456 8.34737 9.18897 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024641 B = 0.001867 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.038111 B =14992.854810 C =15350.228328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.058 4.058 3 Si 0.978 3.022 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.616 5.616 10 C 0.130 3.870 11 C 0.154 3.846 12 H 0.099 0.901 13 N -0.695 5.695 14 C 0.518 3.482 15 O -0.583 6.583 16 C -0.129 4.129 17 C 0.078 3.922 18 O -0.323 6.323 19 C 0.078 3.922 20 C -0.191 4.191 21 C -0.087 4.087 22 C -0.124 4.124 23 C -0.116 4.116 24 C 0.036 3.964 25 F -0.148 7.148 26 C 0.091 3.909 27 H 0.096 0.904 28 O -0.562 6.562 29 C 0.150 3.850 30 H 0.251 0.749 31 H 0.027 0.973 32 H 0.009 0.991 33 H 0.421 0.579 34 H 0.122 0.878 35 H 0.130 0.870 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.143 0.857 39 H 0.159 0.841 40 H 0.167 0.833 41 H 0.163 0.837 42 H 0.396 0.604 43 H 0.011 0.989 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.211 -27.288 2.501 27.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.252 4.252 3 Si 0.806 3.194 4 H -0.214 1.214 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.342 5.342 10 C 0.003 3.997 11 C 0.048 3.952 12 H 0.117 0.883 13 N -0.347 5.347 14 C 0.306 3.694 15 O -0.463 6.463 16 C -0.168 4.168 17 C 0.003 3.997 18 O -0.238 6.238 19 C 0.032 3.968 20 C -0.210 4.210 21 C -0.105 4.105 22 C -0.142 4.142 23 C -0.134 4.134 24 C 0.016 3.984 25 F -0.127 7.127 26 C 0.030 3.970 27 H 0.113 0.887 28 O -0.370 6.370 29 C 0.024 3.976 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.027 0.973 33 H 0.259 0.741 34 H 0.140 0.860 35 H 0.148 0.852 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.161 0.839 39 H 0.176 0.824 40 H 0.185 0.815 41 H 0.180 0.820 42 H 0.247 0.753 43 H 0.028 0.972 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.567 -27.459 1.681 27.886 hybrid contribution -0.117 1.982 0.452 2.037 sum 4.450 -25.476 2.133 25.950 Atomic orbital electron populations 1.70089 1.06112 1.25712 1.57409 1.25601 0.96613 1.00853 1.02144 0.85085 0.77801 0.79165 0.77353 1.21446 1.21408 1.19723 1.19333 0.91486 0.84128 1.42548 0.91004 1.44569 1.10060 1.00348 1.79238 1.21665 0.95755 0.85422 0.96828 1.21794 0.93522 0.84929 0.94976 0.88326 1.45638 1.62787 1.14435 1.11806 1.20779 0.76963 0.84020 0.87633 1.90712 1.57063 1.82656 1.15881 1.21388 1.04902 0.91507 0.99021 1.22451 0.98936 0.84253 0.94102 1.85992 1.76936 1.24447 1.36401 1.19276 0.98303 0.87615 0.91623 1.21481 1.05896 1.02346 0.91295 1.21463 0.95471 0.91856 1.01708 1.21376 0.99868 0.99855 0.93122 1.21371 1.00032 0.96857 0.95162 1.17436 1.07857 0.95722 0.77338 1.91456 1.94378 1.96902 1.29988 1.23285 0.96312 0.94776 0.82634 0.88661 1.86194 1.58837 1.73132 1.18856 1.22008 0.85184 0.93908 0.96468 0.94000 0.95534 0.97301 0.74123 0.86009 0.85237 0.90790 0.91394 0.83944 0.82380 0.81500 0.81960 0.75310 0.97155 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.19 10.68 21.65 0.23 -54.96 16 2 C -0.06 -3.30 5.40 84.86 0.46 -2.84 16 3 Si 0.98 45.52 29.56 68.60 2.03 47.55 16 4 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 7 C -0.25 -14.00 10.24 84.04 0.86 -13.14 16 8 H 0.07 4.02 7.85 -2.91 -0.02 4.00 16 9 N -0.62 -31.86 3.40 -691.73 -2.35 -34.21 16 10 C 0.13 5.72 6.99 86.73 0.61 6.33 16 11 C 0.15 5.36 3.20 46.18 0.15 5.51 16 12 H 0.10 3.58 7.55 -2.39 -0.02 3.56 16 13 N -0.69 -18.93 5.07 -436.91 -2.22 -21.15 16 14 C 0.52 13.82 7.83 87.66 0.69 14.50 16 15 O -0.58 -20.03 15.63 -3.03 -0.05 -20.08 16 16 C -0.13 -2.40 6.07 29.85 0.18 -2.21 16 17 C 0.08 1.61 4.03 71.98 0.29 1.90 16 18 O -0.32 -7.46 10.00 -93.03 -0.93 -8.39 16 19 C 0.08 1.68 6.69 22.53 0.15 1.83 16 20 C -0.19 -3.33 9.04 22.36 0.20 -3.13 16 21 C -0.09 -1.06 10.04 22.26 0.22 -0.84 16 22 C -0.12 -1.28 10.04 22.28 0.22 -1.06 16 23 C -0.12 -1.59 10.02 22.29 0.22 -1.37 16 24 C 0.04 0.75 7.31 22.45 0.16 0.91 16 25 F -0.15 -3.56 17.11 44.97 0.77 -2.79 16 26 C 0.09 3.01 4.28 31.99 0.14 3.14 16 27 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 28 O -0.56 -16.57 12.24 -148.98 -1.82 -18.39 16 29 C 0.15 6.93 5.16 86.84 0.45 7.38 16 30 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 31 H 0.03 1.18 8.03 -2.39 -0.02 1.16 16 32 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.42 9.77 7.59 -92.71 -0.70 9.07 16 34 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.13 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.07 1.51 7.62 -2.39 -0.02 1.49 16 37 H 0.07 1.47 7.62 -2.39 -0.02 1.46 16 38 H 0.14 2.36 6.30 -2.91 -0.02 2.34 16 39 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 40 H 0.17 0.59 8.06 -2.91 -0.02 0.57 16 41 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 42 H 0.40 9.07 9.12 -74.06 -0.68 8.39 16 43 H 0.01 0.53 8.07 -2.39 -0.02 0.51 16 44 H 0.05 2.68 6.94 -2.39 -0.02 2.66 16 Total: -1.00 -74.60 373.11 0.34 -74.26 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -0.33 Total: 21.23 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: 5.00 Total: 16.92 kcal Atomic # 7 Polarization: -105.98 SS G_CDS: -4.33 Total: -110.31 kcal Atomic # 8 Polarization: -44.05 SS G_CDS: -2.80 Total: -46.85 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.77 Total: -2.79 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -74.60 0.34 -74.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220900799.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.769 kcal (2) G-P(sol) polarization free energy of solvation -74.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds