Wall clock time and date at job start Tue Mar 31 2020 20:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00142 * 2 1 4 4 H 1.48502 * 109.47020 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47082 * 120.00017 * 3 2 1 6 6 H 1.48499 * 109.47243 * 240.00073 * 3 2 1 7 7 C 1.37878 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00036 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00181 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.47332 * 179.97438 * 9 7 2 11 11 C 1.47477 * 110.99954 * 265.96996 * 10 9 7 12 12 C 1.53510 * 87.93204 * 221.29867 * 11 10 9 13 13 O 1.42905 * 114.34026 * 272.36382 * 12 11 10 14 14 C 1.35512 * 117.00047 * 251.36950 * 13 12 11 15 15 C 1.39454 * 119.81490 * 183.97082 * 14 13 12 16 16 C 1.36305 * 120.18222 * 179.71333 * 15 14 13 17 17 C 1.40980 * 119.81043 * 0.58572 * 16 15 14 18 18 N 1.34029 * 120.17729 * 179.72205 * 17 16 15 19 19 C 1.32434 * 120.00575 * 64.13939 * 18 17 16 20 20 C 1.46660 * 120.59060 * 6.05711 * 19 18 17 21 21 C 1.35128 * 119.31537 * 179.77634 * 20 19 18 22 22 C 1.41412 * 120.64320 * 0.50680 * 21 20 19 23 23 O 1.22079 * 119.37106 * 179.70336 * 22 21 20 24 24 C 1.41418 * 121.26670 * 359.72038 * 22 21 20 25 25 C 1.35133 * 120.63948 * 0.02686 * 24 22 21 26 26 C 1.40969 * 119.64098 * 359.68647 * 17 16 15 27 27 C 1.36306 * 119.81390 * 0.02562 * 26 17 16 28 28 C 1.47482 * 110.99782 * 169.99637 * 10 9 7 29 29 H 0.96994 * 120.00110 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47076 * 300.00165 * 9 7 2 31 31 H 1.09003 * 109.47110 * 59.99698 * 9 7 2 32 32 H 1.09004 * 113.47802 * 336.06290 * 11 10 9 33 33 H 1.09005 * 113.47545 * 106.52565 * 11 10 9 34 34 H 1.08992 * 114.17223 * 139.67329 * 12 11 10 35 35 H 1.08000 * 119.90819 * 0.02562 * 15 14 13 36 36 H 1.08006 * 120.09733 * 180.27358 * 16 15 14 37 37 H 1.08003 * 120.34317 * 359.97438 * 20 19 18 38 38 H 1.08006 * 119.68047 * 180.22715 * 21 20 19 39 39 H 1.07998 * 119.68157 * 180.02562 * 24 22 21 40 40 H 1.07998 * 120.34370 * 179.97438 * 25 24 22 41 41 H 1.08004 * 120.09568 * 180.02562 * 26 17 16 42 42 H 1.08002 * 119.90696 * 179.97438 * 27 26 17 43 43 H 1.08990 * 113.47580 * 253.46873 * 28 10 9 44 44 H 1.08995 * 113.47641 * 23.94305 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1029 1.6963 1.2124 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2057 -3.6158 0.0005 11 6 2.4755 -4.0804 -1.3729 12 6 2.4190 -5.5182 -0.8381 13 8 3.6659 -6.0128 -0.3454 14 6 4.2890 -6.9595 -1.0882 15 6 5.4666 -7.5430 -0.6216 16 6 6.0964 -8.5001 -1.3600 17 6 5.5608 -8.8909 -2.6041 18 7 6.1771 -9.8273 -3.3388 19 6 6.2805 -11.0659 -2.8815 20 6 5.6128 -11.4601 -1.6366 21 6 5.7318 -12.7320 -1.1960 22 6 6.4995 -13.6757 -1.9171 23 8 6.5958 -14.8171 -1.4950 24 6 7.1582 -13.3224 -3.1176 25 6 7.0698 -12.0662 -3.6077 26 6 4.3732 -8.2919 -3.0710 27 6 3.7525 -7.3405 -2.3177 28 6 1.5184 -4.8986 0.2397 29 1 -0.4850 0.8400 0.0004 30 1 0.6240 -2.5567 0.8903 31 1 0.6247 -2.5571 -0.8897 32 1 1.6756 -3.8466 -2.0755 33 1 3.4597 -3.7930 -1.7430 34 1 1.9080 -6.2198 -1.4974 35 1 5.8779 -7.2393 0.3297 36 1 7.0059 -8.9543 -0.9952 37 1 5.0293 -10.7421 -1.0794 38 1 5.2395 -13.0296 -0.2819 39 1 7.7375 -14.0638 -3.6479 40 1 7.5751 -11.8016 -4.5248 41 1 3.9562 -8.5861 -4.0229 42 1 2.8427 -6.8803 -2.6741 43 1 1.6915 -5.3047 1.2362 44 1 0.4631 -4.8832 -0.0325 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229694857.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:07 Heat of formation + Delta-G solvation = 77.981841 kcal Electronic energy + Delta-G solvation = -26735.697773 eV Core-core repulsion = 22814.904364 eV Total energy + Delta-G solvation = -3920.793409 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.01520 -40.55980 -39.56186 -38.08415 -36.62205 -34.49938 -32.91903 -32.25319 -31.66378 -29.71365 -29.04971 -26.46764 -25.73135 -25.34373 -23.57245 -23.40267 -22.83341 -21.70533 -21.08944 -19.73536 -18.48283 -17.78398 -17.22640 -16.78384 -16.44884 -16.23979 -15.66290 -15.20833 -15.13497 -14.86186 -14.84170 -14.64322 -14.47182 -14.15286 -13.86266 -13.72512 -13.53235 -13.30323 -13.16443 -12.90784 -12.54637 -12.43957 -12.06076 -11.89945 -11.60883 -11.10737 -11.02116 -10.76518 -10.59205 -10.41930 -10.34250 -10.31201 -10.05964 -9.75428 -9.52413 -9.47086 -9.35053 -8.49092 -7.97676 -7.88120 -6.09395 -4.10764 -1.00105 0.82295 0.99203 1.06491 1.75112 3.00686 3.10590 3.26212 3.30578 3.34147 3.37972 3.54325 3.77550 3.84207 4.25334 4.37125 4.43381 4.46120 4.60138 4.66237 4.69400 4.73825 4.79925 5.02473 5.06514 5.23020 5.25959 5.28898 5.32473 5.49902 5.58621 5.60877 5.65921 5.69521 5.76002 5.85864 5.95362 6.01019 6.03024 6.06691 6.16287 6.36520 6.49736 6.98965 7.04253 7.14729 7.37331 7.55848 7.77314 8.01570 8.37288 8.96552 9.53712 11.01602 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.033441 B = 0.001692 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.085099 B =16542.829430 C =16817.693750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.287 1.287 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.156 3.844 10 N -0.456 5.456 11 C -0.005 4.005 12 C 0.040 3.960 13 O -0.269 6.269 14 C 0.150 3.850 15 C -0.141 4.141 16 C -0.088 4.088 17 C 0.004 3.996 18 N -0.386 5.386 19 C 0.174 3.826 20 C -0.086 4.086 21 C -0.183 4.183 22 C 0.397 3.603 23 O -0.454 6.454 24 C -0.195 4.195 25 C -0.024 4.024 26 C -0.058 4.058 27 C -0.199 4.199 28 C 0.001 3.999 29 H 0.262 0.738 30 H 0.031 0.969 31 H 0.004 0.996 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.139 0.861 36 H 0.131 0.869 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.132 0.868 42 H 0.141 0.859 43 H 0.086 0.914 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.528 -25.279 -7.201 28.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.728 3.272 4 H -0.213 1.213 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.030 3.970 10 N -0.179 5.179 11 C -0.135 4.135 12 C -0.016 4.016 13 O -0.180 6.180 14 C 0.102 3.898 15 C -0.161 4.161 16 C -0.108 4.108 17 C -0.098 4.098 18 N -0.092 5.092 19 C -0.003 4.003 20 C -0.107 4.107 21 C -0.206 4.206 22 C 0.281 3.719 23 O -0.333 6.333 24 C -0.218 4.218 25 C -0.043 4.043 26 C -0.077 4.077 27 C -0.218 4.218 28 C -0.128 4.128 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.022 0.978 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.157 0.843 36 H 0.149 0.851 37 H 0.164 0.836 38 H 0.164 0.836 39 H 0.168 0.832 40 H 0.170 0.830 41 H 0.150 0.850 42 H 0.158 0.842 43 H 0.104 0.896 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.189 -24.722 -7.080 28.045 hybrid contribution -0.811 0.968 -0.050 1.264 sum 10.378 -23.754 -7.130 26.885 Atomic orbital electron populations 1.69935 1.06069 1.27015 1.50966 1.25002 0.94910 0.99431 0.95319 0.86517 0.79421 0.82493 0.78749 1.21297 1.20094 1.20240 1.21047 0.93613 0.89692 1.50147 0.91864 1.20309 0.90668 0.89248 0.96753 1.69112 1.33412 1.01440 1.13965 1.24253 1.03018 0.91629 0.94574 1.23818 0.83717 0.95505 0.98582 1.86124 1.34574 1.50640 1.46680 1.19578 0.92062 0.88116 0.90040 1.20098 0.94910 0.98944 1.02103 1.21217 1.00157 0.98313 0.91106 1.18676 0.97364 1.00242 0.93529 1.68523 1.09988 0.99800 1.30925 1.22233 0.94937 0.90986 0.92110 1.23510 0.96132 0.97212 0.93815 1.22867 1.01136 0.94365 1.02271 1.18069 0.79795 0.88250 0.85768 1.90798 1.54008 1.21424 1.67057 1.22832 1.02808 0.97703 0.98493 1.22413 0.93057 0.90761 0.98077 1.20726 0.92863 0.94936 0.99196 1.21045 1.03308 1.01913 0.95560 1.24003 0.96248 0.93224 0.99341 0.92809 0.95104 0.97798 0.90408 0.89881 0.89419 0.84284 0.85085 0.83627 0.83575 0.83156 0.83020 0.85041 0.84155 0.89591 0.90260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.40 13.29 55.43 0.74 -25.67 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.32 9.39 -34.44 -0.32 -14.64 16 8 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 9 C 0.16 3.97 4.57 -4.97 -0.02 3.95 16 10 N -0.46 -9.68 6.32 -246.09 -1.55 -11.24 16 11 C -0.01 -0.09 7.56 -7.54 -0.06 -0.15 16 12 C 0.04 0.58 4.06 -26.20 -0.11 0.47 16 13 O -0.27 -3.98 10.17 -18.23 -0.19 -4.16 16 14 C 0.15 1.83 6.71 -38.68 -0.26 1.57 16 15 C -0.14 -1.50 9.92 -39.82 -0.40 -1.90 16 16 C -0.09 -0.81 8.24 -39.24 -0.32 -1.14 16 17 C 0.00 0.04 4.94 -84.83 -0.42 -0.38 16 18 N -0.39 -3.46 10.33 -6.27 -0.06 -3.53 16 19 C 0.17 1.24 6.77 -80.81 -0.55 0.69 16 20 C -0.09 -0.56 8.97 -37.29 -0.33 -0.90 16 21 C -0.18 -1.22 9.88 -39.48 -0.39 -1.61 16 22 C 0.40 3.18 6.72 -37.17 -0.25 2.93 16 23 O -0.45 -5.16 17.80 4.85 0.09 -5.07 16 24 C -0.20 -1.10 9.88 -39.48 -0.39 -1.49 16 25 C -0.02 -0.12 10.24 -37.29 -0.38 -0.50 16 26 C -0.06 -0.56 9.98 -39.24 -0.39 -0.95 16 27 C -0.20 -2.10 8.97 -39.82 -0.36 -2.46 16 28 C 0.00 0.02 7.52 -7.54 -0.06 -0.04 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.03 0.84 8.08 -51.93 -0.42 0.42 16 31 H 0.00 0.11 7.30 -51.93 -0.38 -0.27 16 32 H 0.08 1.32 7.42 -51.93 -0.39 0.94 16 33 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.09 0.97 5.84 -51.93 -0.30 0.67 16 35 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 37 H 0.15 0.93 6.46 -52.48 -0.34 0.59 16 38 H 0.15 0.82 8.06 -52.48 -0.42 0.39 16 39 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 40 H 0.15 0.48 8.06 -52.49 -0.42 0.06 16 41 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 42 H 0.14 1.33 5.83 -52.49 -0.31 1.02 16 43 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.08 1.22 7.91 -51.93 -0.41 0.81 16 LS Contribution 378.12 15.07 5.70 5.70 Total: -1.00 -32.95 378.12 -10.88 -43.83 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -5.47 Total: -1.40 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -5.10 Total: -15.10 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: -0.88 Total: -40.43 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -0.10 Total: -9.24 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.95 -10.88 -43.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229694857.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.811 kcal (2) G-P(sol) polarization free energy of solvation -32.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds