Wall clock time and date at job start Tue Mar 31 2020 20:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00142 * 2 1 4 4 H 1.48502 * 109.47020 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47082 * 120.00017 * 3 2 1 6 6 H 1.48499 * 109.47243 * 240.00073 * 3 2 1 7 7 C 1.37878 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00036 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00181 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.47332 * 179.97438 * 9 7 2 11 11 C 1.47477 * 110.99954 * 265.96996 * 10 9 7 12 12 C 1.53510 * 87.93204 * 221.29867 * 11 10 9 13 13 O 1.42905 * 114.34026 * 272.36382 * 12 11 10 14 14 C 1.35512 * 117.00047 * 251.36950 * 13 12 11 15 15 C 1.39454 * 119.81490 * 183.97082 * 14 13 12 16 16 C 1.36305 * 120.18222 * 179.71333 * 15 14 13 17 17 C 1.40980 * 119.81043 * 0.58572 * 16 15 14 18 18 N 1.34029 * 120.17729 * 179.72205 * 17 16 15 19 19 C 1.32434 * 120.00575 * 64.13939 * 18 17 16 20 20 C 1.46660 * 120.59060 * 6.05711 * 19 18 17 21 21 C 1.35128 * 119.31537 * 179.77634 * 20 19 18 22 22 C 1.41412 * 120.64320 * 0.50680 * 21 20 19 23 23 O 1.22079 * 119.37106 * 179.70336 * 22 21 20 24 24 C 1.41418 * 121.26670 * 359.72038 * 22 21 20 25 25 C 1.35133 * 120.63948 * 0.02686 * 24 22 21 26 26 C 1.40969 * 119.64098 * 359.68647 * 17 16 15 27 27 C 1.36306 * 119.81390 * 0.02562 * 26 17 16 28 28 C 1.47482 * 110.99782 * 169.99637 * 10 9 7 29 29 H 0.96994 * 120.00110 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47076 * 300.00165 * 9 7 2 31 31 H 1.09003 * 109.47110 * 59.99698 * 9 7 2 32 32 H 1.09004 * 113.47802 * 336.06290 * 11 10 9 33 33 H 1.09005 * 113.47545 * 106.52565 * 11 10 9 34 34 H 1.08992 * 114.17223 * 139.67329 * 12 11 10 35 35 H 1.08000 * 119.90819 * 0.02562 * 15 14 13 36 36 H 1.08006 * 120.09733 * 180.27358 * 16 15 14 37 37 H 1.08003 * 120.34317 * 359.97438 * 20 19 18 38 38 H 1.08006 * 119.68047 * 180.22715 * 21 20 19 39 39 H 1.07998 * 119.68157 * 180.02562 * 24 22 21 40 40 H 1.07998 * 120.34370 * 179.97438 * 25 24 22 41 41 H 1.08004 * 120.09568 * 180.02562 * 26 17 16 42 42 H 1.08002 * 119.90696 * 179.97438 * 27 26 17 43 43 H 1.08990 * 113.47580 * 253.46873 * 28 10 9 44 44 H 1.08995 * 113.47641 * 23.94305 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1029 1.6963 1.2124 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2057 -3.6158 0.0005 11 6 2.4755 -4.0804 -1.3729 12 6 2.4190 -5.5182 -0.8381 13 8 3.6659 -6.0128 -0.3454 14 6 4.2890 -6.9595 -1.0882 15 6 5.4666 -7.5430 -0.6216 16 6 6.0964 -8.5001 -1.3600 17 6 5.5608 -8.8909 -2.6041 18 7 6.1771 -9.8273 -3.3388 19 6 6.2805 -11.0659 -2.8815 20 6 5.6128 -11.4601 -1.6366 21 6 5.7318 -12.7320 -1.1960 22 6 6.4995 -13.6757 -1.9171 23 8 6.5958 -14.8171 -1.4950 24 6 7.1582 -13.3224 -3.1176 25 6 7.0698 -12.0662 -3.6077 26 6 4.3732 -8.2919 -3.0710 27 6 3.7525 -7.3405 -2.3177 28 6 1.5184 -4.8986 0.2397 29 1 -0.4850 0.8400 0.0004 30 1 0.6240 -2.5567 0.8903 31 1 0.6247 -2.5571 -0.8897 32 1 1.6756 -3.8466 -2.0755 33 1 3.4597 -3.7930 -1.7430 34 1 1.9080 -6.2198 -1.4974 35 1 5.8779 -7.2393 0.3297 36 1 7.0059 -8.9543 -0.9952 37 1 5.0293 -10.7421 -1.0794 38 1 5.2395 -13.0296 -0.2819 39 1 7.7375 -14.0638 -3.6479 40 1 7.5751 -11.8016 -4.5248 41 1 3.9562 -8.5861 -4.0229 42 1 2.8427 -6.8803 -2.6741 43 1 1.6915 -5.3047 1.2362 44 1 0.4631 -4.8832 -0.0325 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229694857.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:06 Heat of formation + Delta-G solvation = 56.216496 kcal Electronic energy + Delta-G solvation = -26736.641589 eV Core-core repulsion = 22814.904364 eV Total energy + Delta-G solvation = -3921.737225 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.89463 -41.38925 -40.51443 -39.06089 -37.47691 -35.28499 -34.94575 -32.76641 -32.43992 -31.25992 -29.98840 -27.55131 -27.07379 -26.74386 -24.52956 -24.18166 -23.47496 -23.21078 -21.89084 -20.83945 -19.34708 -18.61555 -18.52791 -17.84899 -17.43502 -17.24689 -16.97656 -16.46612 -16.13059 -15.91631 -15.76929 -15.48250 -15.33060 -15.02988 -14.95255 -14.74143 -14.60376 -14.38434 -13.95405 -13.85855 -13.62741 -13.52315 -13.31466 -13.13469 -12.98022 -12.74301 -12.44048 -12.33231 -11.95836 -11.75812 -11.47988 -11.35490 -11.17003 -10.84841 -10.82423 -10.63498 -10.26080 -10.13221 -9.62050 -8.69666 -8.25272 -6.35180 -1.59423 0.06761 0.29428 0.52433 1.12693 1.38117 1.40878 1.49256 2.00077 2.37350 2.47504 2.59550 2.92645 3.06798 3.21487 3.27533 3.30553 3.31961 3.64594 3.72721 3.75839 3.89836 4.02102 4.20076 4.28187 4.29830 4.37330 4.42826 4.52257 4.59317 4.61118 4.69532 4.82224 4.85132 4.91303 4.94479 4.98993 5.02358 5.11128 5.11941 5.22421 5.26279 5.26825 5.54847 5.57801 5.75951 6.04999 6.33829 6.40126 6.44448 6.54846 6.78302 7.34292 8.85227 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.033441 B = 0.001692 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.085099 B =16542.829430 C =16817.693750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.968 3.032 4 H -0.279 1.279 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.530 4.530 8 H 0.053 0.947 9 C 0.172 3.828 10 N -0.488 5.488 11 C -0.010 4.010 12 C 0.070 3.930 13 O -0.293 6.293 14 C 0.119 3.881 15 C -0.144 4.144 16 C -0.088 4.088 17 C 0.011 3.989 18 N -0.406 5.406 19 C 0.184 3.816 20 C -0.083 4.083 21 C -0.182 4.182 22 C 0.395 3.605 23 O -0.495 6.495 24 C -0.195 4.195 25 C -0.012 4.012 26 C -0.066 4.066 27 C -0.195 4.195 28 C -0.001 4.001 29 H 0.266 0.734 30 H 0.004 0.996 31 H -0.011 1.011 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.128 0.872 35 H 0.142 0.858 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.155 0.845 39 H 0.169 0.831 40 H 0.178 0.822 41 H 0.146 0.854 42 H 0.151 0.849 43 H 0.089 0.911 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.784 -26.469 -8.540 30.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.792 3.208 4 H -0.204 1.204 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.568 4.568 8 H 0.072 0.928 9 C 0.045 3.955 10 N -0.211 5.211 11 C -0.139 4.139 12 C 0.013 3.987 13 O -0.205 6.205 14 C 0.073 3.927 15 C -0.163 4.163 16 C -0.108 4.108 17 C -0.091 4.091 18 N -0.113 5.113 19 C 0.008 3.992 20 C -0.103 4.103 21 C -0.205 4.205 22 C 0.282 3.718 23 O -0.377 6.377 24 C -0.218 4.218 25 C -0.031 4.031 26 C -0.085 4.085 27 C -0.214 4.214 28 C -0.130 4.130 29 H 0.075 0.925 30 H 0.022 0.978 31 H 0.007 0.993 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.145 0.855 35 H 0.159 0.841 36 H 0.165 0.835 37 H 0.167 0.833 38 H 0.172 0.828 39 H 0.187 0.813 40 H 0.195 0.805 41 H 0.164 0.836 42 H 0.168 0.832 43 H 0.108 0.892 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.458 -25.924 -8.431 29.972 hybrid contribution -1.121 1.160 0.331 1.647 sum 11.338 -24.764 -8.100 28.415 Atomic orbital electron populations 1.70042 1.07477 1.28077 1.51460 1.25874 0.95819 1.03047 0.94650 0.85465 0.78254 0.78077 0.79010 1.20361 1.19630 1.19364 1.21381 0.93408 0.91495 1.50541 0.92846 1.19969 0.90647 0.90317 0.94596 1.69002 1.33145 1.02126 1.16803 1.24289 1.02503 0.94182 0.92941 1.23521 0.83662 0.94423 0.97092 1.86078 1.34864 1.51887 1.47692 1.19783 0.93064 0.88879 0.90997 1.20232 0.94591 0.98983 1.02452 1.21358 1.00531 0.97881 0.91029 1.18846 0.96934 1.00028 0.93316 1.68498 1.11442 1.00342 1.30975 1.22544 0.93900 0.90831 0.91950 1.23536 0.95967 0.97106 0.93706 1.22922 1.00901 0.94150 1.02546 1.18488 0.79282 0.87682 0.86318 1.90795 1.55699 1.22953 1.68227 1.22878 1.02840 0.98359 0.97676 1.22618 0.92224 0.89782 0.98498 1.20921 0.92960 0.94868 0.99755 1.21138 1.03548 1.01830 0.94899 1.24076 0.97260 0.90997 1.00684 0.92526 0.97807 0.99314 0.89985 0.90865 0.85515 0.84056 0.83467 0.83302 0.82776 0.81328 0.80482 0.83588 0.83185 0.89250 0.89064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.43 13.29 21.45 0.28 -55.15 16 2 C 0.00 0.26 5.46 84.65 0.46 0.72 16 3 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 4 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.53 -30.75 9.39 25.60 0.24 -30.51 16 8 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 9 C 0.17 9.04 4.57 85.56 0.39 9.43 16 10 N -0.49 -21.19 6.32 -932.90 -5.89 -27.09 16 11 C -0.01 -0.34 7.56 83.58 0.63 0.29 16 12 C 0.07 1.91 4.06 30.94 0.13 2.04 16 13 O -0.29 -8.49 10.17 -88.14 -0.90 -9.38 16 14 C 0.12 2.78 6.71 22.86 0.15 2.93 16 15 C -0.14 -2.89 9.92 22.11 0.22 -2.67 16 16 C -0.09 -1.47 8.24 22.49 0.19 -1.28 16 17 C 0.01 0.18 4.94 40.15 0.20 0.38 16 18 N -0.41 -6.22 10.33 -173.76 -1.79 -8.01 16 19 C 0.18 2.13 6.77 43.45 0.29 2.42 16 20 C -0.08 -0.90 8.97 23.75 0.21 -0.69 16 21 C -0.18 -2.12 9.88 22.33 0.22 -1.90 16 22 C 0.40 5.75 6.72 23.83 0.16 5.91 16 23 O -0.50 -10.96 17.80 -5.57 -0.10 -11.06 16 24 C -0.19 -1.70 9.88 22.34 0.22 -1.48 16 25 C -0.01 -0.09 10.24 23.76 0.24 0.16 16 26 C -0.07 -1.13 9.98 22.49 0.22 -0.91 16 27 C -0.20 -3.77 8.97 22.11 0.20 -3.57 16 28 C 0.00 -0.04 7.52 83.58 0.63 0.59 16 29 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 30 H 0.00 0.22 8.08 -2.39 -0.02 0.20 16 31 H -0.01 -0.59 7.30 -2.39 -0.02 -0.61 16 32 H 0.08 2.80 7.42 -2.38 -0.02 2.78 16 33 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 34 H 0.13 2.50 5.84 -2.39 -0.01 2.49 16 35 H 0.14 2.68 8.06 -2.91 -0.02 2.65 16 36 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 37 H 0.15 1.58 6.46 -2.91 -0.02 1.56 16 38 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 39 H 0.17 0.87 8.06 -2.91 -0.02 0.84 16 40 H 0.18 0.42 8.06 -2.91 -0.02 0.39 16 41 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 42 H 0.15 2.48 5.83 -2.91 -0.02 2.46 16 43 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 44 H 0.09 2.77 7.91 -2.39 -0.02 2.75 16 Total: -1.00 -72.66 378.12 -0.34 -72.99 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 1.02 Total: 9.14 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: 5.01 Total: -18.14 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -7.40 Total: -90.24 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -1.00 Total: -20.44 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -72.66 -0.34 -72.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229694857.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.208 kcal (2) G-P(sol) polarization free energy of solvation -72.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds