Wall clock time and date at job start Tue Mar 31 2020 20:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99892 * 2 1 4 4 H 1.48509 * 109.47040 * 240.00275 * 3 2 1 5 5 H 1.48502 * 109.47167 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47245 * 120.00146 * 3 2 1 7 7 C 1.38808 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99686 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00375 * 0.02562 * 7 2 1 10 10 C 1.47019 * 125.64252 * 359.96859 * 9 7 2 11 11 C 1.54329 * 107.26637 * 178.96768 * 10 9 7 12 12 C 1.55150 * 102.94180 * 337.80461 * 11 10 9 13 13 H 1.09004 * 111.00900 * 277.38802 * 12 11 10 14 14 O 1.42904 * 111.00193 * 153.57994 * 12 11 10 15 15 C 1.35515 * 117.00011 * 157.16224 * 14 12 11 16 16 C 1.39462 * 119.81691 * 3.75163 * 15 14 12 17 17 C 1.36304 * 120.18362 * 179.97438 * 16 15 14 18 18 C 1.40975 * 119.81073 * 0.02562 * 17 16 15 19 19 N 1.34028 * 120.17982 * 179.97438 * 18 17 16 20 20 C 1.32437 * 119.99707 * 63.60556 * 19 18 17 21 21 C 1.46671 * 120.59311 * 185.99247 * 20 19 18 22 22 C 1.35126 * 119.31607 * 179.72385 * 21 20 19 23 23 C 1.41409 * 120.64207 * 0.27746 * 22 21 20 24 24 O 1.22081 * 119.36404 * 179.97438 * 23 22 21 25 25 C 1.41405 * 121.26927 * 359.95271 * 23 22 21 26 26 C 1.35123 * 120.64403 * 0.04596 * 25 23 22 27 27 C 1.40977 * 119.64410 * 0.25710 * 18 17 16 28 28 C 1.36299 * 119.81014 * 359.46415 * 27 18 17 29 29 C 1.47416 * 125.65066 * 180.02562 * 9 7 2 30 30 H 0.97002 * 120.00516 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.88626 * 59.55556 * 10 9 7 32 32 H 1.08998 * 109.88888 * 298.37919 * 10 9 7 33 33 H 1.09006 * 110.71471 * 219.44651 * 11 10 9 34 34 H 1.08994 * 110.87581 * 96.24047 * 11 10 9 35 35 H 1.07992 * 119.90911 * 359.97438 * 16 15 14 36 36 H 1.07994 * 120.09422 * 180.02562 * 17 16 15 37 37 H 1.08000 * 120.33476 * 0.02562 * 21 20 19 38 38 H 1.08003 * 119.67674 * 180.25316 * 22 21 20 39 39 H 1.08005 * 119.67804 * 180.02562 * 25 23 22 40 40 H 1.08000 * 120.34932 * 179.97438 * 26 25 23 41 41 H 1.07999 * 120.09289 * 179.72201 * 27 18 17 42 42 H 1.08002 * 119.90855 * 180.27239 * 28 27 18 43 43 H 1.09002 * 110.37313 * 85.26186 * 29 9 7 44 44 H 1.09004 * 110.36527 * 322.94235 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1375 -2.5327 0.0007 11 6 -0.4484 -4.0441 -0.0259 12 6 0.8519 -4.6561 -0.6107 13 1 0.8565 -4.5971 -1.6991 14 8 1.0248 -6.0055 -0.1730 15 6 1.8072 -6.8049 -0.9380 16 6 2.4623 -6.2755 -2.0496 17 6 3.2515 -7.0727 -2.8239 18 6 3.4042 -8.4359 -2.4985 19 7 4.1780 -9.2266 -3.2551 20 6 5.4781 -8.9908 -3.3447 21 6 6.3151 -9.7639 -4.2683 22 6 7.6378 -9.4980 -4.3429 23 6 8.2169 -8.4902 -3.5376 24 8 9.4146 -8.2697 -3.6235 25 6 7.4354 -7.7326 -2.6349 26 6 6.1077 -7.9553 -2.5185 27 6 2.7337 -8.9643 -1.3767 28 6 1.9527 -8.1524 -0.6095 29 6 1.9334 -3.7311 0.0016 30 1 -0.4851 0.8400 0.0004 31 1 -0.5576 -2.0523 -0.8829 32 1 -0.5543 -2.0844 0.9025 33 1 -1.2985 -4.2515 -0.6760 34 1 -0.6332 -4.4204 0.9802 35 1 2.3440 -5.2312 -2.2976 36 1 3.7585 -6.6612 -3.6841 37 1 5.8777 -10.5344 -4.8859 38 1 8.2588 -10.0609 -5.0240 39 1 7.9043 -6.9686 -2.0323 40 1 5.5154 -7.3742 -1.8272 41 1 2.8419 -10.0086 -1.1234 42 1 1.4419 -8.5546 0.2529 43 1 2.1660 -4.0415 1.0203 44 1 2.8333 -3.7407 -0.6135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229695124.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:13 Heat of formation + Delta-G solvation = 40.642411 kcal Electronic energy + Delta-G solvation = -27489.637914 eV Core-core repulsion = 23567.225346 eV Total energy + Delta-G solvation = -3922.412568 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.85103 -40.44128 -39.22755 -38.40159 -37.04890 -35.96364 -33.83966 -33.21783 -31.83565 -31.06717 -30.38208 -29.21227 -28.37247 -25.66675 -24.19769 -23.90961 -22.82475 -22.40055 -21.82092 -20.94959 -20.51049 -19.39856 -19.10339 -17.58892 -17.38715 -17.09760 -16.66315 -16.28302 -16.14207 -16.01588 -15.53818 -15.27959 -14.75986 -14.62889 -14.51239 -14.46012 -14.27687 -14.15834 -14.01784 -13.97305 -13.76679 -13.52680 -13.40578 -13.19424 -12.73736 -12.37670 -12.31768 -12.17254 -12.02207 -11.89738 -11.75634 -11.58979 -11.31786 -11.26201 -10.78734 -9.86755 -9.73101 -9.31973 -9.11007 -8.88898 -7.62756 -5.49154 -1.69953 0.32352 0.70544 0.82233 0.94614 1.02118 1.31181 1.59520 1.87386 2.06817 2.28599 2.36089 2.51554 2.87668 2.97314 3.31007 3.55236 3.66770 3.75220 3.90391 3.92207 4.04242 4.08568 4.21707 4.31318 4.38278 4.43681 4.55943 4.56396 4.62305 4.71889 4.81958 4.84233 4.91880 4.94687 4.97908 5.01852 5.25298 5.37484 5.43362 5.58525 5.69181 5.90755 5.94169 6.12815 6.30898 6.41425 6.53677 6.58902 6.77532 6.84619 7.22789 8.62127 8.88588 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.012207 B = 0.002498 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.147380 B =11205.247233 C =13141.107676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.076 4.076 3 Si 1.035 2.965 4 H -0.241 1.241 5 H -0.254 1.254 6 H -0.230 1.230 7 C 0.356 3.644 8 H 0.265 0.735 9 N -0.402 5.402 10 C 0.078 3.922 11 C -0.133 4.133 12 C 0.051 3.949 13 H 0.097 0.903 14 O -0.296 6.296 15 C 0.015 3.985 16 C -0.138 4.138 17 C -0.216 4.216 18 C 0.198 3.802 19 N -0.796 5.796 20 C 0.129 3.871 21 C -0.184 4.184 22 C -0.314 4.314 23 C 0.230 3.770 24 O -0.762 6.762 25 C -0.308 4.308 26 C -0.208 4.208 27 C -0.204 4.204 28 C -0.096 4.096 29 C 0.025 3.975 30 H 0.379 0.621 31 H 0.141 0.859 32 H 0.149 0.851 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.149 0.851 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.135 0.865 43 H 0.146 0.854 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -39.403 51.479 24.463 69.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.164 5.164 2 C -0.311 4.311 3 Si 0.848 3.152 4 H -0.164 1.164 5 H -0.177 1.177 6 H -0.153 1.153 7 C 0.176 3.824 8 H 0.280 0.720 9 N -0.070 5.070 10 C -0.042 4.042 11 C -0.171 4.171 12 C -0.007 4.007 13 H 0.115 0.885 14 O -0.210 6.210 15 C -0.030 4.030 16 C -0.157 4.157 17 C -0.240 4.240 18 C 0.081 3.919 19 N -0.533 5.533 20 C 0.011 3.989 21 C -0.208 4.208 22 C -0.335 4.335 23 C 0.155 3.845 24 O -0.683 6.683 25 C -0.329 4.329 26 C -0.233 4.233 27 C -0.227 4.227 28 C -0.115 4.115 29 C -0.096 4.096 30 H 0.199 0.801 31 H 0.159 0.841 32 H 0.167 0.833 33 H 0.131 0.869 34 H 0.123 0.877 35 H 0.167 0.833 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.152 0.848 43 H 0.164 0.836 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -39.918 50.561 24.201 68.815 hybrid contribution 0.729 0.203 -0.560 0.941 sum -39.189 50.763 23.642 68.349 Atomic orbital electron populations 1.69955 1.08911 1.41532 0.96014 1.28443 0.97906 1.05943 0.98769 0.84114 0.78770 0.69078 0.83242 1.16366 1.17724 1.15275 1.26498 1.02685 0.80799 0.72390 0.71979 1.49632 1.12894 1.07817 1.36686 1.23675 0.75083 0.96707 1.08730 1.23042 0.96483 0.92295 1.05232 1.23687 0.95598 0.80848 1.00590 0.88549 1.85924 1.65429 1.20788 1.48865 1.18250 0.99784 0.90206 0.94777 1.20664 0.99506 0.99719 0.95846 1.21441 1.04732 0.95774 1.02044 1.19100 0.94591 0.89924 0.88276 1.66960 1.03108 1.43456 1.39804 1.20212 0.89033 0.94162 0.95471 1.20894 0.92967 1.03660 1.03284 1.21331 0.95760 1.07377 1.09015 1.16850 0.88520 0.89525 0.89608 1.90239 1.19374 1.78949 1.79692 1.21289 0.95875 1.07268 1.08420 1.21779 0.94083 1.02524 1.04930 1.21021 1.06041 0.99574 0.96047 1.19887 0.99832 0.91440 1.00320 1.24324 0.99232 0.78114 1.07936 0.80095 0.84139 0.83319 0.86879 0.87717 0.83321 0.91072 0.90427 0.91440 0.91105 0.89281 0.89300 0.84751 0.83602 0.84787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.54 10.56 10.31 21.65 0.22 10.78 16 2 C -0.08 1.66 5.49 84.86 0.47 2.13 16 3 Si 1.04 -19.08 29.55 68.60 2.03 -17.05 16 4 H -0.24 3.44 7.11 99.48 0.71 4.15 16 5 H -0.25 3.68 7.11 99.48 0.71 4.39 16 6 H -0.23 3.75 7.11 99.48 0.71 4.45 16 7 C 0.36 -8.21 10.28 84.03 0.86 -7.35 16 8 H 0.26 -8.32 7.83 -2.91 -0.02 -8.34 16 9 N -0.40 6.57 3.39 -691.96 -2.35 4.22 16 10 C 0.08 -1.18 5.37 86.73 0.47 -0.72 16 11 C -0.13 0.87 6.69 31.78 0.21 1.08 16 12 C 0.05 0.15 2.81 31.99 0.09 0.24 16 13 H 0.10 0.45 6.17 -2.38 -0.01 0.43 16 14 O -0.30 -5.19 9.93 -88.17 -0.88 -6.07 16 15 C 0.01 0.46 6.71 22.86 0.15 0.62 16 16 C -0.14 -4.78 8.88 22.11 0.20 -4.58 16 17 C -0.22 -11.28 8.20 22.49 0.18 -11.09 16 18 C 0.20 12.22 4.96 40.15 0.20 12.42 16 19 N -0.80 -58.46 10.33 -173.74 -1.79 -60.26 16 20 C 0.13 10.15 6.76 43.46 0.29 10.44 16 21 C -0.18 -14.77 10.24 23.76 0.24 -14.53 16 22 C -0.31 -26.29 9.88 22.33 0.22 -26.07 16 23 C 0.23 20.18 6.72 23.83 0.16 20.34 16 24 O -0.76 -70.10 17.80 -5.58 -0.10 -70.20 16 25 C -0.31 -24.74 9.88 22.33 0.22 -24.52 16 26 C -0.21 -15.74 8.96 23.75 0.21 -15.52 16 27 C -0.20 -10.87 9.98 22.49 0.22 -10.64 16 28 C -0.10 -3.80 9.92 22.11 0.22 -3.58 16 29 C 0.02 -0.16 6.85 86.86 0.60 0.43 16 30 H 0.38 -8.01 8.31 -92.71 -0.77 -8.78 16 31 H 0.14 -2.38 7.38 -2.39 -0.02 -2.40 16 32 H 0.15 -2.76 7.51 -2.39 -0.02 -2.77 16 33 H 0.11 -0.70 8.14 -2.38 -0.02 -0.72 16 34 H 0.10 -0.60 8.14 -2.39 -0.02 -0.61 16 35 H 0.15 3.21 5.63 -2.91 -0.02 3.19 16 36 H 0.07 4.07 8.06 -2.91 -0.02 4.05 16 37 H 0.08 5.92 8.06 -2.91 -0.02 5.90 16 38 H 0.07 5.44 8.06 -2.91 -0.02 5.41 16 39 H 0.07 5.36 8.06 -2.91 -0.02 5.33 16 40 H 0.09 6.19 6.45 -2.91 -0.02 6.17 16 41 H 0.09 4.93 8.06 -2.91 -0.02 4.90 16 42 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 43 H 0.15 -1.03 8.14 -2.39 -0.02 -1.05 16 44 H 0.13 -0.79 7.84 -2.38 -0.02 -0.81 16 Total: -1.00 -185.59 371.10 3.38 -182.21 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: 1.02 Total: 27.27 kcal Atomic # 6 Polarization: -76.13 SS G_CDS: 5.22 Total: -70.91 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: -3.92 Total: -45.25 kcal Atomic # 8 Polarization: -75.29 SS G_CDS: -0.97 Total: -76.27 kcal Atomic # 14 Polarization: -19.08 SS G_CDS: 2.03 Total: -17.05 kcal Total: -185.59 3.38 -182.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229695124.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.855 kcal (2) G-P(sol) polarization free energy of solvation -185.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -182.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds