Wall clock time and date at job start Tue Mar 31 2020 20:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30765 * 1 3 3 Si 1.86798 * 119.99792 * 2 1 4 4 H 1.48501 * 109.47350 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47152 * 299.99399 * 3 2 1 6 6 H 1.48496 * 109.47355 * 59.99525 * 3 2 1 7 7 C 1.40075 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00208 * 178.42106 * 7 2 1 9 9 C 1.40892 * 120.00029 * 358.42901 * 7 2 1 10 10 C 1.41128 * 120.71477 * 327.84072 * 9 7 2 11 11 C 1.36885 * 118.39006 * 180.26165 * 10 9 7 12 12 C 1.38874 * 119.79714 * 359.46278 * 11 10 9 13 13 N 1.31736 * 121.50357 * 0.28421 * 12 11 10 14 14 C 1.32572 * 121.72699 * 359.97438 * 13 12 11 15 15 C 1.47835 * 119.99476 * 180.02562 * 14 13 12 16 16 C 1.39782 * 120.07970 * 137.14402 * 15 14 13 17 17 C 1.38026 * 120.14083 * 179.74477 * 16 15 14 18 18 C 1.38142 * 120.30064 * 0.55935 * 17 16 15 19 19 C 1.39684 * 120.16118 * 359.69585 * 18 17 16 20 20 C 1.47862 * 120.06908 * 180.02562 * 19 18 17 21 21 O 1.21547 * 120.00243 * 222.01923 * 20 19 18 22 22 N 1.34780 * 120.00182 * 42.01840 * 20 19 18 23 23 C 1.47150 * 120.97885 * 4.95195 * 22 20 19 24 24 C 1.53713 * 108.16096 * 129.43286 * 23 22 20 25 25 O 1.42959 * 109.14809 * 52.53463 * 24 23 22 26 26 C 1.42958 * 114.16915 * 297.28782 * 25 24 23 27 27 C 1.47153 * 120.98537 * 185.23107 * 22 20 19 28 28 C 1.39306 * 119.85735 * 0.02562 * 19 18 17 29 29 H 0.96998 * 120.00561 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.80862 * 0.03227 * 10 9 7 31 31 H 1.08002 * 120.10356 * 179.74874 * 11 10 9 32 32 H 1.08006 * 119.24344 * 180.25434 * 12 11 10 33 33 H 1.08004 * 119.93256 * 0.02562 * 16 15 14 34 34 H 1.07995 * 119.84642 * 180.27472 * 17 16 15 35 35 H 1.07999 * 119.91826 * 179.71850 * 18 17 16 36 36 H 1.08998 * 109.68269 * 249.21217 * 23 22 20 37 37 H 1.09000 * 109.68594 * 9.76502 * 23 22 20 38 38 H 1.09007 * 109.65693 * 292.57028 * 24 23 22 39 39 H 1.09003 * 109.48926 * 172.40242 * 24 23 22 40 40 H 1.08998 * 109.51678 * 302.65967 * 26 25 24 41 41 H 1.09000 * 109.55505 * 182.52838 * 26 25 24 42 42 H 1.09003 * 109.67664 * 350.23948 * 27 22 20 43 43 H 1.09004 * 109.67636 * 110.78753 * 27 22 20 44 44 H 1.08005 * 120.14768 * 180.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 3.7016 1.3465 0.0006 5 1 1.8829 2.3964 -1.2126 6 1 1.8828 2.3965 1.2124 7 6 2.0081 -1.2131 0.0005 8 1 3.0878 -1.2132 -0.0252 9 6 1.3041 -2.4330 0.0345 10 6 0.0698 -2.5344 0.7113 11 6 -0.5709 -3.7440 0.7188 12 6 -0.0063 -4.8281 0.0597 13 7 1.1437 -4.7253 -0.5747 14 6 1.8176 -3.5844 -0.6159 15 6 3.1046 -3.5120 -1.3397 16 6 3.3906 -2.4110 -2.1520 17 6 4.5941 -2.3396 -2.8241 18 6 5.5186 -3.3594 -2.7084 19 6 5.2437 -4.4680 -1.9043 20 6 6.2350 -5.5582 -1.7814 21 8 5.8692 -6.7172 -1.7997 22 7 7.5442 -5.2669 -1.6492 23 6 8.0006 -3.8743 -1.5159 24 6 8.9312 -3.7898 -0.2954 25 8 9.9521 -4.7834 -0.4144 26 6 9.4637 -6.1269 -0.4186 27 6 8.5601 -6.3315 -1.6398 28 6 4.0336 -4.5442 -1.2184 29 1 -0.4851 0.8400 -0.0004 30 1 -0.3570 -1.6794 1.2144 31 1 -1.5150 -3.8537 1.2318 32 1 -0.5216 -5.7773 0.0678 33 1 2.6703 -1.6122 -2.2504 34 1 4.8119 -1.4846 -3.4469 35 1 6.4564 -3.2993 -3.2406 36 1 8.5414 -3.5777 -2.4146 37 1 7.1420 -3.2189 -1.3704 38 1 8.3581 -3.9640 0.6154 39 1 9.3882 -2.8011 -0.2543 40 1 8.8926 -6.3096 0.4916 41 1 10.3035 -6.8202 -0.4669 42 1 8.0719 -7.3041 -1.5765 43 1 9.1562 -6.2780 -2.5509 44 1 3.8163 -5.3991 -0.5950 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240067000.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:57 Heat of formation + Delta-G solvation = -19.356287 kcal Electronic energy + Delta-G solvation = -28712.839692 eV Core-core repulsion = 24787.825386 eV Total energy + Delta-G solvation = -3925.014307 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.54777 -39.07015 -38.33900 -37.36047 -34.86041 -34.24899 -32.32635 -31.49882 -30.84600 -30.40915 -28.80007 -27.86806 -25.82434 -24.50420 -23.58782 -22.89394 -21.84803 -21.29880 -20.53101 -19.29355 -17.56142 -17.34655 -16.73304 -16.19443 -15.88817 -15.70535 -15.62623 -15.23425 -15.05503 -14.97546 -14.50442 -14.18542 -13.89421 -13.75047 -13.33632 -13.15795 -12.81810 -12.61874 -12.50938 -12.17288 -12.02010 -11.74651 -11.62090 -11.55055 -11.46678 -11.17833 -11.13718 -10.96131 -10.81279 -10.60358 -10.36497 -9.96535 -9.72190 -9.52292 -8.75422 -8.70662 -8.44232 -8.20494 -8.11659 -7.43546 -6.92309 -4.65984 1.37503 1.72713 2.51109 2.74158 2.82247 2.93180 2.97739 3.02718 3.08408 3.57533 3.73533 4.27473 4.47404 4.49359 4.55223 4.78543 4.83834 5.01410 5.06866 5.20772 5.29684 5.32099 5.37954 5.48665 5.51198 5.54432 5.55593 5.68461 5.92582 5.98142 6.12841 6.18390 6.24805 6.38311 6.50836 6.63790 6.65465 6.78325 6.83059 6.88459 6.94940 7.10932 7.23076 7.32936 7.39531 7.60884 7.74046 7.81389 8.19058 8.27120 8.51292 8.56116 9.45177 9.94781 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.012611 B = 0.003530 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.794098 B = 7929.487244 C = 9294.835040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.071 3.929 3 Si 0.913 3.087 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.444 4.444 8 H 0.087 0.913 9 C 0.084 3.916 10 C -0.122 4.122 11 C -0.152 4.152 12 C -0.022 4.022 13 N -0.454 5.454 14 C 0.013 3.987 15 C 0.021 3.979 16 C -0.068 4.068 17 C -0.134 4.134 18 C -0.112 4.112 19 C -0.146 4.146 20 C 0.571 3.429 21 O -0.534 6.534 22 N -0.617 5.617 23 C 0.066 3.934 24 C 0.046 3.954 25 O -0.382 6.382 26 C 0.048 3.952 27 C 0.077 3.923 28 C -0.054 4.054 29 H 0.284 0.716 30 H 0.135 0.865 31 H 0.101 0.899 32 H 0.123 0.877 33 H 0.141 0.859 34 H 0.123 0.877 35 H 0.118 0.882 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.059 0.941 39 H 0.107 0.893 40 H 0.057 0.943 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.074 0.926 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.794 -0.930 -1.816 13.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.147 4.147 3 Si 0.736 3.264 4 H -0.180 1.180 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.473 4.473 8 H 0.105 0.895 9 C 0.080 3.920 10 C -0.148 4.148 11 C -0.172 4.172 12 C -0.183 4.183 13 N -0.162 5.162 14 C -0.124 4.124 15 C 0.020 3.980 16 C -0.087 4.087 17 C -0.153 4.153 18 C -0.131 4.131 19 C -0.149 4.149 20 C 0.361 3.639 21 O -0.411 6.411 22 N -0.352 5.352 23 C -0.057 4.057 24 C -0.032 4.032 25 O -0.300 6.300 26 C -0.029 4.029 27 C -0.045 4.045 28 C -0.074 4.074 29 H 0.095 0.905 30 H 0.152 0.848 31 H 0.119 0.881 32 H 0.140 0.860 33 H 0.158 0.842 34 H 0.141 0.859 35 H 0.136 0.864 36 H 0.095 0.905 37 H 0.129 0.871 38 H 0.077 0.923 39 H 0.125 0.875 40 H 0.075 0.925 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.092 0.908 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 13.918 -2.076 -2.255 14.251 hybrid contribution -0.527 1.497 0.434 1.645 sum 13.391 -0.580 -1.820 13.526 Atomic orbital electron populations 1.69702 1.07574 1.29542 1.35345 1.25984 0.94925 1.01499 0.92264 0.86157 0.80920 0.80399 0.78879 1.18005 1.19595 1.19628 1.19591 0.95118 0.89538 1.43094 0.89469 1.18367 0.92359 0.92449 0.88816 1.21614 0.96961 0.96426 0.99776 1.21520 0.99714 0.94949 1.01066 1.21745 0.94772 0.97860 1.03954 1.67056 1.07118 1.26420 1.15583 1.19521 0.96660 0.91192 1.05047 1.18402 0.92252 0.92911 0.94445 1.21730 0.96405 0.97745 0.92807 1.20936 0.94393 0.98790 1.01133 1.21135 0.99488 0.93189 0.99272 1.19510 0.95773 0.95649 1.03948 1.18608 0.81409 0.88898 0.74987 1.90756 1.79239 1.21064 1.50055 1.48025 1.05863 1.07395 1.73947 1.22834 1.00221 0.83441 0.99202 1.23117 0.90137 0.92860 0.97069 1.87939 1.32760 1.14852 1.94487 1.22979 0.98410 0.84328 0.97218 1.22262 0.90212 0.93025 0.99024 1.21272 0.90531 0.98046 0.97516 0.90511 0.84759 0.88120 0.85959 0.84165 0.85945 0.86378 0.90502 0.87142 0.92306 0.87491 0.92510 0.87703 0.88024 0.90768 0.85642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -18.58 10.68 55.55 0.59 -17.98 16 2 C 0.07 1.59 5.39 -17.32 -0.09 1.50 16 3 Si 0.91 16.77 29.56 -169.99 -5.03 11.74 16 4 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 5 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 6 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 7 C -0.44 -10.40 6.53 -37.89 -0.25 -10.65 16 8 H 0.09 1.98 6.66 -52.49 -0.35 1.63 16 9 C 0.08 2.09 5.54 -106.41 -0.59 1.50 16 10 C -0.12 -2.95 8.72 -38.98 -0.34 -3.29 16 11 C -0.15 -3.38 10.03 -39.84 -0.40 -3.78 16 12 C -0.02 -0.50 11.16 -17.36 -0.19 -0.69 16 13 N -0.45 -11.09 10.13 -9.17 -0.09 -11.19 16 14 C 0.01 0.32 6.44 -82.24 -0.53 -0.21 16 15 C 0.02 0.44 5.29 -104.96 -0.55 -0.11 16 16 C -0.07 -1.29 7.91 -39.08 -0.31 -1.60 16 17 C -0.13 -2.06 10.02 -39.69 -0.40 -2.46 16 18 C -0.11 -1.64 7.44 -39.08 -0.29 -1.93 16 19 C -0.15 -2.51 5.06 -105.02 -0.53 -3.04 16 20 C 0.57 9.60 7.31 -12.32 -0.09 9.51 16 21 O -0.53 -10.73 16.42 5.32 0.09 -10.64 16 22 N -0.62 -8.05 3.01 -173.13 -0.52 -8.57 16 23 C 0.07 0.69 5.12 -3.32 -0.02 0.67 16 24 C 0.05 0.44 7.00 37.53 0.26 0.70 16 25 O -0.38 -4.09 10.74 -35.23 -0.38 -4.47 16 26 C 0.05 0.46 6.98 37.31 0.26 0.72 16 27 C 0.08 0.84 6.65 -3.53 -0.02 0.82 16 28 C -0.05 -1.09 9.25 -38.75 -0.36 -1.45 16 29 H 0.28 6.03 8.29 -40.82 -0.34 5.69 16 30 H 0.13 3.30 6.24 -52.49 -0.33 2.97 16 31 H 0.10 1.93 8.06 -52.49 -0.42 1.50 16 32 H 0.12 2.41 8.06 -52.48 -0.42 1.98 16 33 H 0.14 2.79 6.66 -52.48 -0.35 2.44 16 34 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 35 H 0.12 1.38 6.69 -52.49 -0.35 1.03 16 36 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 37 H 0.11 1.21 5.03 -51.93 -0.26 0.95 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.10 1.20 7.06 -51.93 -0.37 0.84 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.13 2.70 8.06 -52.48 -0.42 2.28 16 LS Contribution 361.37 15.07 5.45 5.45 Total: -1.00 -29.14 361.37 -9.70 -38.84 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -5.36 Total: 10.62 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -4.44 Total: -13.79 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: -0.02 Total: -37.74 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.29 Total: -15.11 kcal Atomic # 14 Polarization: 16.77 SS G_CDS: -5.03 Total: 11.74 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.14 -9.70 -38.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240067000.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.481 kcal (2) G-P(sol) polarization free energy of solvation -29.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds