Wall clock time and date at job start Tue Mar 31 2020 20:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30765 * 1 3 3 Si 1.86798 * 119.99792 * 2 1 4 4 H 1.48501 * 109.47350 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47152 * 299.99399 * 3 2 1 6 6 H 1.48496 * 109.47355 * 59.99525 * 3 2 1 7 7 C 1.40075 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00208 * 178.42106 * 7 2 1 9 9 C 1.40892 * 120.00029 * 358.42901 * 7 2 1 10 10 C 1.41128 * 120.71477 * 327.84072 * 9 7 2 11 11 C 1.36885 * 118.39006 * 180.26165 * 10 9 7 12 12 C 1.38874 * 119.79714 * 359.46278 * 11 10 9 13 13 N 1.31736 * 121.50357 * 0.28421 * 12 11 10 14 14 C 1.32572 * 121.72699 * 359.97438 * 13 12 11 15 15 C 1.47835 * 119.99476 * 180.02562 * 14 13 12 16 16 C 1.39782 * 120.07970 * 137.14402 * 15 14 13 17 17 C 1.38026 * 120.14083 * 179.74477 * 16 15 14 18 18 C 1.38142 * 120.30064 * 0.55935 * 17 16 15 19 19 C 1.39684 * 120.16118 * 359.69585 * 18 17 16 20 20 C 1.47862 * 120.06908 * 180.02562 * 19 18 17 21 21 O 1.21547 * 120.00243 * 222.01923 * 20 19 18 22 22 N 1.34780 * 120.00182 * 42.01840 * 20 19 18 23 23 C 1.47150 * 120.97885 * 4.95195 * 22 20 19 24 24 C 1.53713 * 108.16096 * 129.43286 * 23 22 20 25 25 O 1.42959 * 109.14809 * 52.53463 * 24 23 22 26 26 C 1.42958 * 114.16915 * 297.28782 * 25 24 23 27 27 C 1.47153 * 120.98537 * 185.23107 * 22 20 19 28 28 C 1.39306 * 119.85735 * 0.02562 * 19 18 17 29 29 H 0.96998 * 120.00561 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.80862 * 0.03227 * 10 9 7 31 31 H 1.08002 * 120.10356 * 179.74874 * 11 10 9 32 32 H 1.08006 * 119.24344 * 180.25434 * 12 11 10 33 33 H 1.08004 * 119.93256 * 0.02562 * 16 15 14 34 34 H 1.07995 * 119.84642 * 180.27472 * 17 16 15 35 35 H 1.07999 * 119.91826 * 179.71850 * 18 17 16 36 36 H 1.08998 * 109.68269 * 249.21217 * 23 22 20 37 37 H 1.09000 * 109.68594 * 9.76502 * 23 22 20 38 38 H 1.09007 * 109.65693 * 292.57028 * 24 23 22 39 39 H 1.09003 * 109.48926 * 172.40242 * 24 23 22 40 40 H 1.08998 * 109.51678 * 302.65967 * 26 25 24 41 41 H 1.09000 * 109.55505 * 182.52838 * 26 25 24 42 42 H 1.09003 * 109.67664 * 350.23948 * 27 22 20 43 43 H 1.09004 * 109.67636 * 110.78753 * 27 22 20 44 44 H 1.08005 * 120.14768 * 180.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 3.7016 1.3465 0.0006 5 1 1.8829 2.3964 -1.2126 6 1 1.8828 2.3965 1.2124 7 6 2.0081 -1.2131 0.0005 8 1 3.0878 -1.2132 -0.0252 9 6 1.3041 -2.4330 0.0345 10 6 0.0698 -2.5344 0.7113 11 6 -0.5709 -3.7440 0.7188 12 6 -0.0063 -4.8281 0.0597 13 7 1.1437 -4.7253 -0.5747 14 6 1.8176 -3.5844 -0.6159 15 6 3.1046 -3.5120 -1.3397 16 6 3.3906 -2.4110 -2.1520 17 6 4.5941 -2.3396 -2.8241 18 6 5.5186 -3.3594 -2.7084 19 6 5.2437 -4.4680 -1.9043 20 6 6.2350 -5.5582 -1.7814 21 8 5.8692 -6.7172 -1.7997 22 7 7.5442 -5.2669 -1.6492 23 6 8.0006 -3.8743 -1.5159 24 6 8.9312 -3.7898 -0.2954 25 8 9.9521 -4.7834 -0.4144 26 6 9.4637 -6.1269 -0.4186 27 6 8.5601 -6.3315 -1.6398 28 6 4.0336 -4.5442 -1.2184 29 1 -0.4851 0.8400 -0.0004 30 1 -0.3570 -1.6794 1.2144 31 1 -1.5150 -3.8537 1.2318 32 1 -0.5216 -5.7773 0.0678 33 1 2.6703 -1.6122 -2.2504 34 1 4.8119 -1.4846 -3.4469 35 1 6.4564 -3.2993 -3.2406 36 1 8.5414 -3.5777 -2.4146 37 1 7.1420 -3.2189 -1.3704 38 1 8.3581 -3.9640 0.6154 39 1 9.3882 -2.8011 -0.2543 40 1 8.8926 -6.3096 0.4916 41 1 10.3035 -6.8202 -0.4669 42 1 8.0719 -7.3041 -1.5765 43 1 9.1562 -6.2780 -2.5509 44 1 3.8163 -5.3991 -0.5950 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240067000.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:56 Heat of formation + Delta-G solvation = -36.224171 kcal Electronic energy + Delta-G solvation = -28713.571139 eV Core-core repulsion = 24787.825386 eV Total energy + Delta-G solvation = -3925.745753 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.70845 -40.58422 -39.54669 -38.77181 -36.00190 -35.91997 -33.70834 -32.71259 -32.38910 -31.81848 -30.35496 -28.86981 -27.57346 -25.44441 -24.81773 -24.38624 -23.36653 -22.64124 -22.01072 -20.46158 -19.28452 -18.63549 -17.83671 -17.45801 -17.20921 -16.91655 -16.75996 -16.50506 -16.37886 -16.01063 -15.92098 -15.62142 -15.25439 -15.12128 -14.63716 -14.40133 -14.30389 -14.13766 -13.83877 -13.50573 -13.24514 -13.20349 -13.14192 -12.85815 -12.77587 -12.60974 -12.35412 -12.32765 -12.05928 -11.76989 -11.62948 -11.28358 -11.20485 -10.98370 -10.38699 -10.00992 -9.92948 -9.85286 -9.61360 -9.11386 -8.61921 -6.44772 -0.02568 0.24281 0.84998 1.11621 1.43057 1.52095 1.57993 1.59536 1.80752 2.20226 2.73769 2.83272 2.88434 3.37425 3.63454 3.71997 3.79013 3.94032 4.05331 4.07465 4.16113 4.20784 4.24635 4.42998 4.47071 4.50729 4.52569 4.64128 4.64605 4.73123 4.77980 4.83471 4.89672 4.90388 5.02998 5.07445 5.19700 5.23767 5.31791 5.43444 5.53377 5.72322 5.80958 5.94843 6.00369 6.05709 6.06794 6.16003 6.48649 6.74341 6.78282 6.95058 7.65223 8.28044 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.012611 B = 0.003530 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.794098 B = 7929.487244 C = 9294.835040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.035 3.965 3 Si 0.983 3.017 4 H -0.247 1.247 5 H -0.264 1.264 6 H -0.270 1.270 7 C -0.455 4.455 8 H 0.089 0.911 9 C 0.058 3.942 10 C -0.147 4.147 11 C -0.151 4.151 12 C -0.037 4.037 13 N -0.479 5.479 14 C -0.001 4.001 15 C -0.009 4.009 16 C -0.077 4.077 17 C -0.117 4.117 18 C -0.086 4.086 19 C -0.147 4.147 20 C 0.566 3.434 21 O -0.580 6.580 22 N -0.609 5.609 23 C 0.061 3.939 24 C 0.045 3.955 25 O -0.388 6.388 26 C 0.052 3.948 27 C 0.073 3.927 28 C -0.071 4.071 29 H 0.291 0.709 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.148 0.852 33 H 0.126 0.874 34 H 0.167 0.833 35 H 0.162 0.838 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.046 0.954 39 H 0.135 0.865 40 H 0.045 0.955 41 H 0.133 0.867 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.988 1.089 -3.244 17.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.170 1.170 5 H -0.188 1.188 6 H -0.195 1.195 7 C -0.484 4.484 8 H 0.107 0.893 9 C 0.053 3.947 10 C -0.173 4.173 11 C -0.171 4.171 12 C -0.197 4.197 13 N -0.187 5.187 14 C -0.139 4.139 15 C -0.010 4.010 16 C -0.096 4.096 17 C -0.135 4.135 18 C -0.104 4.104 19 C -0.150 4.150 20 C 0.356 3.644 21 O -0.460 6.460 22 N -0.342 5.342 23 C -0.061 4.061 24 C -0.032 4.032 25 O -0.307 6.307 26 C -0.026 4.026 27 C -0.048 4.048 28 C -0.091 4.091 29 H 0.102 0.898 30 H 0.143 0.857 31 H 0.148 0.852 32 H 0.166 0.834 33 H 0.144 0.856 34 H 0.184 0.816 35 H 0.180 0.820 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.064 0.936 39 H 0.153 0.847 40 H 0.064 0.936 41 H 0.151 0.849 42 H 0.105 0.895 43 H 0.115 0.885 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 17.138 -0.057 -3.673 17.528 hybrid contribution -1.449 0.821 0.862 1.875 sum 15.689 0.764 -2.811 15.958 Atomic orbital electron populations 1.69765 1.09068 1.30845 1.35471 1.26832 0.95577 1.04471 0.91164 0.85115 0.79931 0.75745 0.78940 1.16985 1.18817 1.19466 1.19717 0.95196 0.89833 1.43679 0.89294 1.18725 0.93058 0.93459 0.89422 1.21677 0.97760 0.96993 1.00899 1.21781 1.00564 0.94116 1.00644 1.22236 0.94615 0.99117 1.03748 1.67119 1.08015 1.27034 1.16567 1.20031 0.97851 0.90952 1.05085 1.18430 0.91723 0.94642 0.96236 1.21702 0.97909 0.96568 0.93471 1.21344 0.92372 0.99981 0.99787 1.21549 1.00567 0.91167 0.97141 1.19632 0.94792 0.96804 1.03759 1.18589 0.82666 0.88015 0.75085 1.90732 1.80231 1.22574 1.52502 1.48120 1.04863 1.09348 1.71891 1.23096 1.00434 0.81550 1.01002 1.23229 0.89954 0.94009 0.96048 1.87940 1.33167 1.15209 1.94361 1.23046 0.98998 0.84632 0.95884 1.22465 0.89773 0.91785 1.00821 1.21037 0.92186 0.97157 0.98759 0.89804 0.85652 0.85175 0.83422 0.85563 0.81584 0.82029 0.87516 0.87562 0.93609 0.84698 0.93649 0.84898 0.89518 0.88541 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -39.24 10.68 21.85 0.23 -39.00 16 2 C 0.03 1.56 5.39 85.30 0.46 2.02 16 3 Si 0.98 33.53 29.56 68.60 2.03 35.56 16 4 H -0.25 -7.97 7.11 99.48 0.71 -7.26 16 5 H -0.26 -8.64 7.11 99.48 0.71 -7.94 16 6 H -0.27 -9.09 7.11 99.48 0.71 -8.38 16 7 C -0.45 -21.89 6.53 23.37 0.15 -21.73 16 8 H 0.09 4.11 6.66 -2.91 -0.02 4.09 16 9 C 0.06 2.99 5.54 -21.02 -0.12 2.87 16 10 C -0.15 -7.46 8.72 22.66 0.20 -7.26 16 11 C -0.15 -6.93 10.03 22.10 0.22 -6.70 16 12 C -0.04 -1.72 11.16 84.86 0.95 -0.78 16 13 N -0.48 -24.68 10.13 -182.91 -1.85 -26.53 16 14 C 0.00 -0.07 6.44 42.47 0.27 0.20 16 15 C -0.01 -0.42 5.29 -20.08 -0.11 -0.52 16 16 C -0.08 -2.91 7.91 22.59 0.18 -2.73 16 17 C -0.12 -3.21 10.02 22.20 0.22 -2.98 16 18 C -0.09 -2.22 7.44 22.60 0.17 -2.05 16 19 C -0.15 -4.98 5.06 -20.12 -0.10 -5.08 16 20 C 0.57 18.85 7.31 86.79 0.63 19.48 16 21 O -0.58 -24.00 16.42 -3.86 -0.06 -24.07 16 22 N -0.61 -14.66 3.01 -819.92 -2.47 -17.14 16 23 C 0.06 1.04 5.12 86.50 0.44 1.48 16 24 C 0.04 0.72 7.00 72.22 0.51 1.23 16 25 O -0.39 -7.08 10.74 -148.98 -1.60 -8.68 16 26 C 0.05 0.86 6.98 72.08 0.50 1.36 16 27 C 0.07 1.46 6.65 86.35 0.57 2.03 16 28 C -0.07 -3.01 9.25 22.81 0.21 -2.80 16 29 H 0.29 12.47 8.29 -92.71 -0.77 11.70 16 30 H 0.13 6.46 6.24 -2.91 -0.02 6.44 16 31 H 0.13 5.01 8.06 -2.91 -0.02 4.98 16 32 H 0.15 5.92 8.06 -2.91 -0.02 5.90 16 33 H 0.13 5.07 6.66 -2.91 -0.02 5.05 16 34 H 0.17 3.15 8.06 -2.91 -0.02 3.13 16 35 H 0.16 2.83 6.69 -2.91 -0.02 2.81 16 36 H 0.11 1.29 8.08 -2.39 -0.02 1.27 16 37 H 0.11 1.93 5.03 -2.39 -0.01 1.92 16 38 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 39 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.09 2.02 7.06 -2.39 -0.02 2.00 16 43 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.10 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -68.29 361.37 2.68 -65.61 By element: Atomic # 1 Polarization: 35.17 SS G_CDS: 1.04 Total: 36.21 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: 5.37 Total: -21.97 kcal Atomic # 7 Polarization: -78.58 SS G_CDS: -4.09 Total: -82.67 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -1.66 Total: -32.75 kcal Atomic # 14 Polarization: 33.53 SS G_CDS: 2.03 Total: 35.56 kcal Total: -68.29 2.68 -65.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240067000.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.390 kcal (2) G-P(sol) polarization free energy of solvation -68.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds