Wall clock time and date at job start Tue Mar 31 2020 20:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30709 * 1 3 3 Si 1.86792 * 120.00589 * 2 1 4 4 H 1.48497 * 109.47299 * 240.00061 * 3 2 1 5 5 H 1.48499 * 109.47070 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47420 * 119.99718 * 3 2 1 7 7 C 1.40110 * 119.99597 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99892 * 180.02562 * 7 2 1 9 9 C 1.40993 * 120.00210 * 359.97438 * 7 2 1 10 10 C 1.40873 * 119.68626 * 179.97438 * 9 7 2 11 11 C 1.36687 * 119.25429 * 180.02562 * 10 9 7 12 12 C 1.40256 * 118.60475 * 0.02562 * 11 10 9 13 13 C 1.47996 * 120.34317 * 179.97438 * 12 11 10 14 14 C 1.39728 * 120.07544 * 359.97438 * 13 12 11 15 15 C 1.38026 * 120.14792 * 180.02562 * 14 13 12 16 16 C 1.38138 * 120.29671 * 0.03918 * 15 14 13 17 17 C 1.39677 * 120.15184 * 359.95664 * 16 15 14 18 18 C 1.47864 * 120.07514 * 180.02562 * 17 16 15 19 19 O 1.21554 * 120.00040 * 219.07157 * 18 17 16 20 20 N 1.34777 * 120.00220 * 39.06699 * 18 17 16 21 21 C 1.47156 * 120.97902 * 5.51146 * 20 18 17 22 22 C 1.53709 * 108.16149 * 129.42673 * 21 20 18 23 23 O 1.42960 * 109.14613 * 52.54054 * 22 21 20 24 24 C 1.42967 * 114.16533 * 297.28061 * 23 22 21 25 25 C 1.47151 * 120.98371 * 185.78811 * 20 18 17 26 26 C 1.39319 * 119.84848 * 0.02562 * 17 16 15 27 27 C 1.40077 * 119.31230 * 0.24665 * 12 11 10 28 28 N 1.31203 * 120.68902 * 359.47825 * 27 12 11 29 29 H 0.97003 * 119.99750 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.36900 * 0.05305 * 10 9 7 31 31 H 1.07996 * 120.69616 * 179.97438 * 11 10 9 32 32 H 1.08002 * 119.92854 * 0.02562 * 14 13 12 33 33 H 1.07999 * 119.85112 * 180.02562 * 15 14 13 34 34 H 1.08000 * 119.91895 * 179.97438 * 16 15 14 35 35 H 1.09000 * 109.67879 * 249.20684 * 21 20 18 36 36 H 1.09007 * 109.68195 * 9.76009 * 21 20 18 37 37 H 1.09001 * 109.65818 * 292.57276 * 22 21 20 38 38 H 1.09000 * 109.48463 * 172.39808 * 22 21 20 39 39 H 1.08993 * 109.51642 * 302.66248 * 24 23 22 40 40 H 1.08999 * 109.55831 * 182.52843 * 24 23 22 41 41 H 1.08991 * 109.68146 * 350.24054 * 25 20 18 42 42 H 1.08995 * 109.68152 * 110.79551 * 25 20 18 43 43 H 1.08008 * 120.14565 * 179.72032 * 26 17 16 44 44 H 1.07996 * 119.65968 * 179.72471 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2412 1.6176 0.0000 4 1 3.0950 1.6962 -1.2125 5 1 1.2763 2.7464 -0.0006 6 1 3.0950 1.6963 1.2125 7 6 2.0076 -1.2134 -0.0005 8 1 3.0876 -1.2135 -0.0001 9 6 1.3025 -2.4344 -0.0005 10 6 2.0135 -3.6506 -0.0016 11 6 1.3212 -4.8291 -0.0022 12 6 -0.0807 -4.7844 -0.0021 13 6 -0.8687 -6.0371 -0.0033 14 6 -0.2181 -7.2736 -0.0049 15 6 -0.9515 -8.4429 -0.0065 16 6 -2.3322 -8.3994 -0.0073 17 6 -2.9955 -7.1701 -0.0056 18 6 -4.4734 -7.1256 -0.0059 19 8 -5.0562 -6.2894 -0.6682 20 7 -5.1745 -8.0122 0.7282 21 6 -4.4940 -8.9550 1.6302 22 6 -5.1642 -8.8659 3.0106 23 8 -6.5751 -9.0393 2.8589 24 6 -7.2078 -8.0277 2.0713 25 6 -6.6427 -8.0701 0.6469 26 6 -2.2613 -5.9861 -0.0036 27 6 -0.7271 -3.5417 -0.0068 28 7 -0.0352 -2.4269 -0.0010 29 1 -0.4850 0.8401 -0.0004 30 1 3.0935 -3.6517 -0.0016 31 1 1.8426 -5.7749 -0.0034 32 1 0.8612 -7.3146 -0.0049 33 1 -0.4437 -9.3960 -0.0073 34 1 -2.9001 -9.3181 -0.0089 35 1 -4.5858 -9.9683 1.2391 36 1 -3.4407 -8.6873 1.7142 37 1 -4.9628 -7.8906 3.4537 38 1 -4.7687 -9.6486 3.6580 39 1 -7.0138 -7.0495 2.5110 40 1 -8.2825 -8.2071 2.0420 41 1 -7.0128 -7.2163 0.0796 42 1 -6.9470 -8.9958 0.1586 43 1 -2.7692 -5.0329 -0.0068 44 1 -1.8063 -3.5007 -0.0114 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240072601.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:25 Heat of formation + Delta-G solvation = -10.730948 kcal Electronic energy + Delta-G solvation = -27908.845122 eV Core-core repulsion = 23984.204838 eV Total energy + Delta-G solvation = -3924.640284 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.65582 -39.08806 -38.32975 -37.49402 -34.97699 -34.01091 -32.35965 -31.54853 -31.11304 -30.41252 -28.94343 -27.99758 -25.75143 -24.60543 -23.82270 -22.74656 -22.20501 -21.13386 -20.55880 -19.36159 -17.74617 -17.40227 -16.85762 -16.38808 -16.02173 -15.78167 -15.69151 -15.29553 -15.09615 -14.81668 -14.50094 -14.34244 -13.78443 -13.67018 -13.30826 -13.22804 -12.84147 -12.77283 -12.61312 -12.29165 -12.19939 -11.91161 -11.77398 -11.58626 -11.31259 -11.15996 -11.01422 -10.96708 -10.77877 -10.54053 -10.43485 -10.16958 -9.81872 -9.68900 -8.95952 -8.82272 -8.62867 -8.35079 -7.74430 -7.31845 -6.64098 -4.70560 1.16075 1.53060 2.58606 2.68062 2.87273 2.96121 2.97416 2.97825 3.14647 3.51069 3.76098 4.14898 4.38812 4.45960 4.63327 4.71014 4.76192 4.94380 4.98191 5.10430 5.17657 5.24215 5.31073 5.43153 5.44384 5.52202 5.60786 5.65593 5.74958 5.75265 5.92536 5.95346 6.16287 6.22895 6.35199 6.51882 6.59914 6.65340 6.68496 6.76588 6.87304 6.89980 7.17086 7.20063 7.24253 7.47119 7.62503 7.82385 7.98441 8.09371 8.38855 8.68116 9.89512 10.05372 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.017562 B = 0.002428 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.952861 B =11528.228678 C =12475.297956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.695 5.695 2 C 0.061 3.939 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.262 1.262 7 C -0.402 4.402 8 H 0.089 0.911 9 C 0.250 3.750 10 C -0.272 4.272 11 C -0.033 4.033 12 C -0.284 4.284 13 C 0.034 3.966 14 C -0.128 4.128 15 C -0.112 4.112 16 C -0.140 4.140 17 C -0.122 4.122 18 C 0.567 3.433 19 O -0.532 6.532 20 N -0.616 5.616 21 C 0.065 3.935 22 C 0.045 3.955 23 O -0.382 6.382 24 C 0.048 3.952 25 C 0.077 3.923 26 C -0.092 4.092 27 C 0.161 3.839 28 N -0.488 5.488 29 H 0.279 0.721 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.059 0.941 38 H 0.107 0.893 39 H 0.057 0.943 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.075 0.925 43 H 0.129 0.871 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.598 -15.195 4.309 17.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.314 5.314 2 C -0.167 4.167 3 Si 0.737 3.263 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.431 4.431 8 H 0.107 0.893 9 C 0.128 3.872 10 C -0.294 4.294 11 C -0.056 4.056 12 C -0.290 4.290 13 C 0.033 3.967 14 C -0.147 4.147 15 C -0.130 4.130 16 C -0.159 4.159 17 C -0.125 4.125 18 C 0.358 3.642 19 O -0.409 6.409 20 N -0.351 5.351 21 C -0.058 4.058 22 C -0.032 4.032 23 O -0.300 6.300 24 C -0.030 4.030 25 C -0.045 4.045 26 C -0.111 4.111 27 C -0.009 4.009 28 N -0.199 5.199 29 H 0.091 0.909 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.095 0.905 36 H 0.129 0.871 37 H 0.077 0.923 38 H 0.125 0.875 39 H 0.076 0.924 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.093 0.907 43 H 0.146 0.854 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.565 -13.850 4.029 16.775 hybrid contribution 0.980 -0.074 -0.167 0.996 sum -7.585 -13.924 3.863 16.319 Atomic orbital electron populations 1.70105 1.07417 1.28705 1.25192 1.26232 0.95064 1.01617 0.93811 0.86272 0.80106 0.79774 0.80158 1.18643 1.19905 1.18648 1.19813 0.94704 0.89596 1.38973 0.89313 1.18689 0.88602 0.91978 0.87950 1.21438 0.98937 0.93535 1.15506 1.20625 0.92906 0.96780 0.95294 1.18970 0.93151 0.92161 1.24681 1.18821 0.91839 0.93044 0.92994 1.21348 0.99971 0.91709 1.01659 1.20860 0.93448 0.97996 1.00707 1.21064 0.94673 0.95921 1.04260 1.19548 0.91402 0.94835 1.06688 1.18624 0.87544 0.79632 0.78442 1.90774 1.71353 1.36185 1.42553 1.48003 1.06682 1.36582 1.43878 1.22896 0.99242 0.93577 0.90096 1.23117 0.81344 1.02727 0.96020 1.87944 1.20598 1.49749 1.71733 1.22989 0.97871 0.92024 0.90069 1.22275 0.80042 1.04012 0.98212 1.21215 0.93257 0.97002 0.99637 1.22806 0.98760 0.87903 0.91414 1.68825 1.07049 1.26284 1.17773 0.90918 0.88025 0.88237 0.86033 0.86255 0.86322 0.90507 0.87074 0.92317 0.87534 0.92431 0.87627 0.87938 0.90722 0.85361 0.85944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.72 11.44 55.56 0.64 -17.09 16 2 C 0.06 1.47 5.50 -17.33 -0.10 1.37 16 3 Si 0.91 17.50 29.56 -169.99 -5.02 12.47 16 4 H -0.26 -4.95 7.11 56.52 0.40 -4.54 16 5 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 6 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 7 C -0.40 -10.15 9.12 -37.84 -0.35 -10.50 16 8 H 0.09 2.05 7.85 -52.48 -0.41 1.64 16 9 C 0.25 6.55 6.55 -84.98 -0.56 6.00 16 10 C -0.27 -6.33 9.76 -39.15 -0.38 -6.71 16 11 C -0.03 -0.70 9.46 -39.38 -0.37 -1.08 16 12 C -0.28 -6.16 5.92 -104.45 -0.62 -6.78 16 13 C 0.03 0.63 5.88 -104.93 -0.62 0.02 16 14 C -0.13 -2.00 9.44 -39.10 -0.37 -2.37 16 15 C -0.11 -1.45 10.02 -39.70 -0.40 -1.84 16 16 C -0.14 -1.82 7.41 -39.08 -0.29 -2.10 16 17 C -0.12 -1.91 5.16 -105.02 -0.54 -2.45 16 18 C 0.57 8.93 7.35 -12.32 -0.09 8.84 16 19 O -0.53 -10.19 16.38 5.32 0.09 -10.10 16 20 N -0.62 -7.46 3.01 -173.12 -0.52 -7.98 16 21 C 0.06 0.60 5.03 -3.32 -0.02 0.58 16 22 C 0.05 0.39 7.00 37.53 0.26 0.65 16 23 O -0.38 -3.82 10.74 -35.23 -0.38 -4.19 16 24 C 0.05 0.42 6.99 37.31 0.26 0.69 16 25 C 0.08 0.79 6.65 -3.53 -0.02 0.77 16 26 C -0.09 -1.66 9.02 -38.77 -0.35 -2.01 16 27 C 0.16 3.86 10.60 -17.13 -0.18 3.68 16 28 N -0.49 -13.09 7.83 -10.85 -0.08 -13.17 16 29 H 0.28 6.43 8.29 -40.82 -0.34 6.09 16 30 H 0.10 2.15 8.06 -52.49 -0.42 1.72 16 31 H 0.10 1.78 6.29 -52.49 -0.33 1.45 16 32 H 0.12 1.75 6.24 -52.49 -0.33 1.42 16 33 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.12 1.23 6.40 -52.49 -0.34 0.89 16 35 H 0.08 0.60 8.02 -51.93 -0.42 0.18 16 36 H 0.11 1.06 4.92 -51.92 -0.26 0.80 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.10 1.15 7.06 -51.93 -0.37 0.79 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.13 2.44 6.20 -52.48 -0.33 2.11 16 44 H 0.12 2.73 6.21 -52.49 -0.33 2.40 16 LS Contribution 361.42 15.07 5.45 5.45 Total: -1.00 -30.68 361.42 -9.75 -40.43 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -5.19 Total: 7.43 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -4.72 Total: -13.25 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.03 Total: -38.24 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.29 Total: -14.29 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.02 Total: 12.47 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.68 -9.75 -40.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240072601.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.703 kcal (2) G-P(sol) polarization free energy of solvation -30.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds