Wall clock time and date at job start Tue Mar 31 2020 20:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86807 * 119.99401 * 2 1 4 4 H 1.48505 * 109.46740 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47128 * 299.99388 * 3 2 1 6 6 H 1.48494 * 109.47309 * 59.99902 * 3 2 1 7 7 C 1.40015 * 120.00310 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99968 * 180.02562 * 7 2 1 9 9 C 1.41393 * 119.99952 * 359.97438 * 7 2 1 10 10 C 1.40753 * 119.76552 * 180.02562 * 9 7 2 11 11 C 1.38230 * 119.18700 * 179.97438 * 10 9 7 12 12 C 1.38751 * 118.68741 * 359.75089 * 11 10 9 13 13 C 1.39860 * 119.45950 * 0.49682 * 12 11 10 14 14 C 1.48279 * 119.60666 * 179.76708 * 13 12 11 15 15 C 1.39498 * 119.98064 * 179.72868 * 14 13 12 16 16 C 1.37707 * 120.02287 * 180.02562 * 15 14 13 17 17 C 1.39668 * 119.97530 * 359.97438 * 16 15 14 18 18 C 1.47799 * 120.01850 * 179.97438 * 17 16 15 19 19 O 1.21559 * 120.00265 * 49.27864 * 18 17 16 20 20 N 1.34778 * 119.99972 * 229.28368 * 18 17 16 21 21 C 1.47156 * 120.98130 * 356.20217 * 20 18 17 22 22 C 1.53295 * 108.37986 * 129.44384 * 21 20 18 23 23 O 1.42964 * 109.22525 * 52.30670 * 22 21 20 24 24 C 1.42960 * 114.16070 * 297.41420 * 23 22 21 25 25 C 1.47154 * 120.98230 * 176.18322 * 20 18 17 26 26 C 1.39670 * 119.96480 * 0.25082 * 17 16 15 27 27 C 1.37710 * 119.97691 * 359.51669 * 26 17 16 28 28 N 1.32257 * 120.78644 * 359.49313 * 13 12 11 29 29 H 0.96998 * 120.00411 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.40817 * 359.96566 * 10 9 7 31 31 H 1.08003 * 120.65448 * 180.02562 * 11 10 9 32 32 H 1.07998 * 120.27329 * 180.24547 * 12 11 10 33 33 H 1.08008 * 119.98822 * 359.97438 * 15 14 13 34 34 H 1.07999 * 120.00953 * 180.02562 * 16 15 14 35 35 H 1.09000 * 109.68022 * 9.72706 * 21 20 18 36 36 H 1.08993 * 109.68240 * 249.16669 * 21 20 18 37 37 H 1.09008 * 109.50831 * 172.22621 * 22 21 20 38 38 H 1.08997 * 109.51695 * 292.32556 * 22 21 20 39 39 H 1.09009 * 109.50800 * 182.50250 * 24 23 22 40 40 H 1.08999 * 109.51768 * 302.65523 * 24 23 22 41 41 H 1.08999 * 109.68025 * 110.83084 * 25 20 18 42 42 H 1.09001 * 109.71304 * 350.29490 * 25 20 18 43 43 H 1.08002 * 120.01514 * 179.74574 * 26 17 16 44 44 H 1.07994 * 119.99107 * 180.20964 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6179 0.0000 4 1 3.7013 1.3466 0.0006 5 1 1.8826 2.3965 -1.2126 6 1 1.8825 2.3966 1.2124 7 6 2.0076 -1.2125 0.0005 8 1 3.0876 -1.2125 0.0010 9 6 1.3007 -2.4371 0.0016 10 6 2.0095 -3.6531 0.0027 11 6 1.3063 -4.8432 0.0043 12 6 -0.0804 -4.7975 0.0101 13 6 -0.7278 -3.5577 0.0036 14 6 -2.2097 -3.5051 0.0045 15 6 -2.8634 -2.2728 0.0037 16 6 -4.2396 -2.2229 0.0051 17 6 -4.9808 -3.4067 0.0067 18 6 -6.4578 -3.3542 0.0087 19 8 -7.0421 -2.6467 -0.7886 20 7 -7.1571 -4.0908 0.8948 21 6 -6.4768 -5.0169 1.8140 22 6 -6.9744 -4.7381 3.2369 23 8 -8.4037 -4.7665 3.2498 24 6 -9.0162 -3.7636 2.4357 25 6 -8.6233 -3.9924 0.9717 26 6 -4.3254 -4.6401 0.0122 27 6 -2.9492 -4.6880 0.0060 28 7 -0.0340 -2.4318 0.0020 29 1 -0.4851 0.8400 -0.0004 30 1 3.0894 -3.6563 0.0022 31 1 1.8261 -5.7899 0.0056 32 1 -0.6553 -5.7117 0.0155 33 1 -2.2900 -1.3575 0.0029 34 1 -4.7455 -1.2687 0.0041 35 1 -5.3995 -4.8583 1.7643 36 1 -6.7101 -6.0452 1.5384 37 1 -6.5890 -5.5010 3.9134 38 1 -6.6261 -3.7567 3.5588 39 1 -10.1000 -3.8254 2.5357 40 1 -8.6761 -2.7782 2.7542 41 1 -9.0727 -4.9177 0.6113 42 1 -8.9681 -3.1558 0.3640 43 1 -4.8978 -5.5559 0.0176 44 1 -2.4422 -5.6416 0.0068 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241530176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:33 Heat of formation + Delta-G solvation = -9.010307 kcal Electronic energy + Delta-G solvation = -28183.223623 eV Core-core repulsion = 24258.657951 eV Total energy + Delta-G solvation = -3924.565671 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.66722 -39.08320 -38.36631 -37.42665 -34.95198 -33.81586 -32.36008 -31.49485 -30.96733 -30.26251 -29.20294 -27.91627 -25.83994 -24.60702 -23.90006 -22.50771 -22.19819 -21.00829 -20.48826 -19.55896 -17.73617 -17.46271 -16.83753 -16.32962 -16.03332 -15.80410 -15.34948 -15.19312 -14.97358 -14.87156 -14.54029 -14.29512 -13.73337 -13.60865 -13.24167 -13.14991 -13.05239 -12.85941 -12.60329 -12.41058 -12.19510 -11.78364 -11.70243 -11.35354 -11.27968 -11.11410 -11.03092 -10.88204 -10.71457 -10.49817 -10.43969 -10.01903 -9.83567 -9.56182 -8.97129 -8.77941 -8.60673 -8.18406 -7.75484 -7.37553 -6.53914 -4.63617 1.05990 1.75392 2.51497 2.64997 2.79264 3.02172 3.04434 3.07992 3.13748 3.50363 3.87092 4.15219 4.37453 4.46575 4.69299 4.71830 4.75891 4.93159 4.98039 5.05185 5.19207 5.22523 5.29415 5.32793 5.43990 5.48857 5.60399 5.74051 5.80330 5.84564 5.98984 6.11586 6.20622 6.29414 6.38671 6.52182 6.62164 6.68221 6.74135 6.75825 7.02031 7.11213 7.16442 7.21453 7.36276 7.45668 7.59429 7.89162 8.04809 8.11221 8.54248 8.79093 9.90702 10.19033 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.015540 B = 0.002736 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.366046 B =10229.641132 C =11188.372723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.718 5.718 2 C 0.071 3.929 3 Si 0.908 3.092 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.428 4.428 8 H 0.085 0.915 9 C 0.255 3.745 10 C -0.266 4.266 11 C -0.061 4.061 12 C -0.297 4.297 13 C 0.166 3.834 14 C 0.010 3.990 15 C -0.084 4.084 16 C -0.078 4.078 17 C -0.147 4.147 18 C 0.571 3.429 19 O -0.536 6.536 20 N -0.615 5.615 21 C 0.062 3.938 22 C 0.046 3.954 23 O -0.381 6.381 24 C 0.048 3.952 25 C 0.077 3.923 26 C -0.104 4.104 27 C -0.117 4.117 28 N -0.465 5.465 29 H 0.273 0.727 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.162 0.838 34 H 0.124 0.876 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.059 0.941 39 H 0.106 0.894 40 H 0.056 0.944 41 H 0.075 0.925 42 H 0.101 0.899 43 H 0.122 0.878 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.996 -7.159 5.053 15.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.339 5.339 2 C -0.155 4.155 3 Si 0.732 3.268 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.459 4.459 8 H 0.103 0.897 9 C 0.129 3.871 10 C -0.289 4.289 11 C -0.085 4.085 12 C -0.320 4.320 13 C 0.022 3.978 14 C 0.009 3.991 15 C -0.102 4.102 16 C -0.097 4.097 17 C -0.150 4.150 18 C 0.361 3.639 19 O -0.413 6.413 20 N -0.350 5.350 21 C -0.061 4.061 22 C -0.031 4.031 23 O -0.300 6.300 24 C -0.029 4.029 25 C -0.045 4.045 26 C -0.122 4.122 27 C -0.136 4.136 28 N -0.178 5.178 29 H 0.084 0.916 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.179 0.821 34 H 0.142 0.858 35 H 0.130 0.870 36 H 0.096 0.904 37 H 0.126 0.874 38 H 0.077 0.923 39 H 0.124 0.876 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.119 0.881 43 H 0.140 0.860 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.984 -5.923 4.723 15.904 hybrid contribution 1.048 -0.098 -0.190 1.069 sum -12.936 -6.021 4.532 14.971 Atomic orbital electron populations 1.70047 1.07264 1.27803 1.28821 1.26035 0.94921 1.01112 0.93385 0.86254 0.80808 0.81050 0.78639 1.18436 1.19767 1.19787 1.19654 0.94345 0.89252 1.42691 0.89666 1.18530 0.87773 0.92093 0.88683 1.21834 0.98901 0.93555 1.14640 1.20805 0.93844 0.96768 0.97073 1.21208 0.94581 0.96752 1.19499 1.19704 0.91383 0.90250 0.96456 1.19088 0.92335 0.92697 0.94954 1.21756 0.92969 0.99994 0.95512 1.21088 0.93982 0.96606 0.97993 1.19660 0.91460 0.95117 1.08769 1.18594 0.87483 0.78274 0.79580 1.90762 1.71294 1.40807 1.38444 1.48052 1.06880 1.42918 1.37139 1.22789 1.00039 0.93635 0.89593 1.23030 0.81211 1.02781 0.96127 1.87954 1.19280 1.54891 1.67840 1.22992 0.98800 0.91792 0.89366 1.22274 0.80370 1.03933 0.97940 1.21004 0.94485 0.95945 1.00787 1.21193 0.92947 0.98466 1.01013 1.68690 1.07512 1.25137 1.16472 0.91575 0.88128 0.88330 0.88307 0.82079 0.85831 0.87031 0.90371 0.87415 0.92311 0.87619 0.92520 0.90690 0.88073 0.85971 0.85192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -17.83 11.09 55.55 0.62 -17.21 16 2 C 0.07 1.71 5.50 -17.35 -0.10 1.61 16 3 Si 0.91 17.87 29.56 -169.99 -5.02 12.85 16 4 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 5 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 6 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.43 -10.92 9.14 -37.72 -0.34 -11.27 16 8 H 0.09 2.04 7.85 -52.49 -0.41 1.63 16 9 C 0.25 6.66 6.55 -85.01 -0.56 6.10 16 10 C -0.27 -6.24 9.83 -38.63 -0.38 -6.62 16 11 C -0.06 -1.29 10.15 -39.39 -0.40 -1.69 16 12 C -0.30 -6.28 9.47 -38.79 -0.37 -6.64 16 13 C 0.17 3.82 6.73 -82.95 -0.56 3.26 16 14 C 0.01 0.20 5.88 -104.83 -0.62 -0.41 16 15 C -0.08 -1.64 9.55 -39.31 -0.38 -2.01 16 16 C -0.08 -1.33 9.71 -39.24 -0.38 -1.72 16 17 C -0.15 -2.28 5.05 -104.92 -0.53 -2.81 16 18 C 0.57 8.70 7.26 -12.35 -0.09 8.61 16 19 O -0.54 -9.83 16.52 5.31 0.09 -9.74 16 20 N -0.61 -7.32 3.02 -173.40 -0.52 -7.84 16 21 C 0.06 0.59 5.42 -3.53 -0.02 0.57 16 22 C 0.05 0.40 6.98 37.31 0.26 0.66 16 23 O -0.38 -3.79 10.74 -35.23 -0.38 -4.17 16 24 C 0.05 0.41 6.98 37.31 0.26 0.67 16 25 C 0.08 0.77 6.62 -3.53 -0.02 0.74 16 26 C -0.10 -1.45 7.36 -39.24 -0.29 -1.74 16 27 C -0.12 -1.87 9.40 -39.30 -0.37 -2.24 16 28 N -0.47 -12.05 6.90 -7.68 -0.05 -12.10 16 29 H 0.27 6.15 8.29 -40.82 -0.34 5.81 16 30 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 31 H 0.10 1.76 8.06 -52.48 -0.42 1.34 16 32 H 0.10 1.78 6.16 -52.49 -0.32 1.45 16 33 H 0.16 3.53 7.14 -52.48 -0.37 3.15 16 34 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 35 H 0.11 1.11 4.70 -51.93 -0.24 0.87 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.11 0.72 8.14 -51.92 -0.42 0.30 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.11 0.65 8.14 -51.92 -0.42 0.23 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.10 1.08 7.11 -51.93 -0.37 0.71 16 43 H 0.12 1.35 6.93 -52.49 -0.36 0.99 16 44 H 0.13 1.84 6.15 -52.49 -0.32 1.52 16 LS Contribution 364.09 15.07 5.49 5.49 Total: -1.00 -30.17 364.09 -10.01 -40.19 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -5.35 Total: 7.48 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -4.87 Total: -14.93 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.04 Total: -37.16 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.29 Total: -13.91 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.02 Total: 12.85 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.17 -10.01 -40.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241530176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.175 kcal (2) G-P(sol) polarization free energy of solvation -30.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds