Wall clock time and date at job start Tue Mar 31 2020 20:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86807 * 119.99401 * 2 1 4 4 H 1.48505 * 109.46740 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47128 * 299.99388 * 3 2 1 6 6 H 1.48494 * 109.47309 * 59.99902 * 3 2 1 7 7 C 1.40015 * 120.00310 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99968 * 180.02562 * 7 2 1 9 9 C 1.41393 * 119.99952 * 359.97438 * 7 2 1 10 10 C 1.40753 * 119.76552 * 180.02562 * 9 7 2 11 11 C 1.38230 * 119.18700 * 179.97438 * 10 9 7 12 12 C 1.38751 * 118.68741 * 359.75089 * 11 10 9 13 13 C 1.39860 * 119.45950 * 0.49682 * 12 11 10 14 14 C 1.48279 * 119.60666 * 179.76708 * 13 12 11 15 15 C 1.39498 * 119.98064 * 179.72868 * 14 13 12 16 16 C 1.37707 * 120.02287 * 180.02562 * 15 14 13 17 17 C 1.39668 * 119.97530 * 359.97438 * 16 15 14 18 18 C 1.47799 * 120.01850 * 179.97438 * 17 16 15 19 19 O 1.21559 * 120.00265 * 49.27864 * 18 17 16 20 20 N 1.34778 * 119.99972 * 229.28368 * 18 17 16 21 21 C 1.47156 * 120.98130 * 356.20217 * 20 18 17 22 22 C 1.53295 * 108.37986 * 129.44384 * 21 20 18 23 23 O 1.42964 * 109.22525 * 52.30670 * 22 21 20 24 24 C 1.42960 * 114.16070 * 297.41420 * 23 22 21 25 25 C 1.47154 * 120.98230 * 176.18322 * 20 18 17 26 26 C 1.39670 * 119.96480 * 0.25082 * 17 16 15 27 27 C 1.37710 * 119.97691 * 359.51669 * 26 17 16 28 28 N 1.32257 * 120.78644 * 359.49313 * 13 12 11 29 29 H 0.96998 * 120.00411 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.40817 * 359.96566 * 10 9 7 31 31 H 1.08003 * 120.65448 * 180.02562 * 11 10 9 32 32 H 1.07998 * 120.27329 * 180.24547 * 12 11 10 33 33 H 1.08008 * 119.98822 * 359.97438 * 15 14 13 34 34 H 1.07999 * 120.00953 * 180.02562 * 16 15 14 35 35 H 1.09000 * 109.68022 * 9.72706 * 21 20 18 36 36 H 1.08993 * 109.68240 * 249.16669 * 21 20 18 37 37 H 1.09008 * 109.50831 * 172.22621 * 22 21 20 38 38 H 1.08997 * 109.51695 * 292.32556 * 22 21 20 39 39 H 1.09009 * 109.50800 * 182.50250 * 24 23 22 40 40 H 1.08999 * 109.51768 * 302.65523 * 24 23 22 41 41 H 1.08999 * 109.68025 * 110.83084 * 25 20 18 42 42 H 1.09001 * 109.71304 * 350.29490 * 25 20 18 43 43 H 1.08002 * 120.01514 * 179.74574 * 26 17 16 44 44 H 1.07994 * 119.99107 * 180.20964 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6179 0.0000 4 1 3.7013 1.3466 0.0006 5 1 1.8826 2.3965 -1.2126 6 1 1.8825 2.3966 1.2124 7 6 2.0076 -1.2125 0.0005 8 1 3.0876 -1.2125 0.0010 9 6 1.3007 -2.4371 0.0016 10 6 2.0095 -3.6531 0.0027 11 6 1.3063 -4.8432 0.0043 12 6 -0.0804 -4.7975 0.0101 13 6 -0.7278 -3.5577 0.0036 14 6 -2.2097 -3.5051 0.0045 15 6 -2.8634 -2.2728 0.0037 16 6 -4.2396 -2.2229 0.0051 17 6 -4.9808 -3.4067 0.0067 18 6 -6.4578 -3.3542 0.0087 19 8 -7.0421 -2.6467 -0.7886 20 7 -7.1571 -4.0908 0.8948 21 6 -6.4768 -5.0169 1.8140 22 6 -6.9744 -4.7381 3.2369 23 8 -8.4037 -4.7665 3.2498 24 6 -9.0162 -3.7636 2.4357 25 6 -8.6233 -3.9924 0.9717 26 6 -4.3254 -4.6401 0.0122 27 6 -2.9492 -4.6880 0.0060 28 7 -0.0340 -2.4318 0.0020 29 1 -0.4851 0.8400 -0.0004 30 1 3.0894 -3.6563 0.0022 31 1 1.8261 -5.7899 0.0056 32 1 -0.6553 -5.7117 0.0155 33 1 -2.2900 -1.3575 0.0029 34 1 -4.7455 -1.2687 0.0041 35 1 -5.3995 -4.8583 1.7643 36 1 -6.7101 -6.0452 1.5384 37 1 -6.5890 -5.5010 3.9134 38 1 -6.6261 -3.7567 3.5588 39 1 -10.1000 -3.8254 2.5357 40 1 -8.6761 -2.7782 2.7542 41 1 -9.0727 -4.9177 0.6113 42 1 -8.9681 -3.1558 0.3640 43 1 -4.8978 -5.5559 0.0176 44 1 -2.4422 -5.6416 0.0068 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241530176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:32 Heat of formation + Delta-G solvation = -26.156958 kcal Electronic energy + Delta-G solvation = -28183.967157 eV Core-core repulsion = 24258.657951 eV Total energy + Delta-G solvation = -3925.309206 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.74079 -40.46409 -39.55852 -38.81618 -35.93684 -35.56477 -33.68740 -32.57288 -32.48006 -31.71953 -30.69000 -28.90453 -27.56564 -25.62417 -25.01833 -23.96616 -23.31061 -22.59767 -21.91737 -20.61663 -19.37974 -18.66073 -17.97303 -17.57178 -17.02098 -16.77342 -16.55046 -16.49383 -16.34349 -16.04296 -15.82219 -15.49997 -15.09172 -15.08340 -14.57990 -14.54432 -14.38165 -14.20609 -13.97744 -13.63816 -13.27401 -12.95785 -12.89263 -12.77189 -12.74592 -12.60979 -12.35818 -12.29261 -11.97057 -11.78498 -11.67609 -11.31660 -11.28943 -11.00107 -10.52077 -9.96280 -9.89303 -9.70228 -9.52154 -9.01259 -8.30636 -6.51209 -0.34159 0.43956 0.94385 1.17100 1.40127 1.48351 1.54233 1.57014 1.80309 2.21518 2.67299 2.84639 3.00318 3.32176 3.65784 3.73266 3.89768 3.90983 3.98157 4.02551 4.09462 4.20617 4.23269 4.33565 4.42487 4.49506 4.53946 4.63760 4.71529 4.73416 4.78275 4.82194 4.88000 4.90699 4.95299 5.07647 5.14986 5.24213 5.29297 5.40518 5.53799 5.60160 5.77402 5.86678 5.93404 6.07186 6.12637 6.18409 6.27170 6.73724 6.91243 6.95047 8.13688 8.43343 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.015540 B = 0.002736 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.366046 B =10229.641132 C =11188.372723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.751 5.751 2 C 0.027 3.973 3 Si 0.983 3.017 4 H -0.255 1.255 5 H -0.269 1.269 6 H -0.267 1.267 7 C -0.467 4.467 8 H 0.087 0.913 9 C 0.220 3.780 10 C -0.290 4.290 11 C -0.059 4.059 12 C -0.291 4.291 13 C 0.144 3.856 14 C -0.019 4.019 15 C -0.102 4.102 16 C -0.083 4.083 17 C -0.140 4.140 18 C 0.569 3.431 19 O -0.576 6.576 20 N -0.608 5.608 21 C 0.058 3.942 22 C 0.045 3.955 23 O -0.390 6.390 24 C 0.051 3.949 25 C 0.074 3.926 26 C -0.081 4.081 27 C -0.103 4.103 28 N -0.499 5.499 29 H 0.277 0.723 30 H 0.110 0.890 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.133 0.867 38 H 0.049 0.951 39 H 0.132 0.868 40 H 0.049 0.951 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.165 0.835 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.470 -10.047 5.790 18.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.195 4.195 3 Si 0.804 3.196 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.192 1.192 7 C -0.499 4.499 8 H 0.105 0.895 9 C 0.094 3.906 10 C -0.313 4.313 11 C -0.083 4.083 12 C -0.314 4.314 13 C 0.001 3.999 14 C -0.020 4.020 15 C -0.120 4.120 16 C -0.102 4.102 17 C -0.144 4.144 18 C 0.358 3.642 19 O -0.456 6.456 20 N -0.341 5.341 21 C -0.064 4.064 22 C -0.032 4.032 23 O -0.309 6.309 24 C -0.026 4.026 25 C -0.048 4.048 26 C -0.099 4.099 27 C -0.122 4.122 28 N -0.212 5.212 29 H 0.087 0.913 30 H 0.128 0.872 31 H 0.157 0.843 32 H 0.156 0.844 33 H 0.145 0.855 34 H 0.140 0.860 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.150 0.850 38 H 0.067 0.933 39 H 0.150 0.850 40 H 0.067 0.933 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.183 0.817 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -15.471 -8.862 5.495 18.657 hybrid contribution 1.335 0.619 -0.376 1.519 sum -14.136 -8.243 5.119 17.146 Atomic orbital electron populations 1.70165 1.08639 1.28769 1.29717 1.26886 0.95729 1.04238 0.92616 0.85138 0.79457 0.76363 0.78631 1.17856 1.19423 1.19233 1.19956 0.94675 0.90346 1.44889 0.89462 1.19014 0.88568 0.93491 0.89515 1.22029 0.99589 0.93851 1.15817 1.21267 0.94186 0.97555 0.95296 1.21666 0.94981 0.97472 1.17249 1.20355 0.93118 0.90512 0.95914 1.19151 0.91096 0.94151 0.97585 1.21475 0.93771 0.99184 0.97615 1.21025 0.93067 0.97673 0.98464 1.19822 0.92025 0.95148 1.07383 1.18495 0.87198 0.78497 0.79964 1.90749 1.71768 1.42671 1.40399 1.48145 1.07861 1.41977 1.36070 1.23020 0.99662 0.94201 0.89474 1.23137 0.80827 1.03206 0.96067 1.87953 1.19784 1.55134 1.67983 1.23071 1.00259 0.91227 0.88066 1.22460 0.79022 1.04410 0.98896 1.21362 0.93856 0.96700 0.98026 1.21403 0.93511 0.97870 0.99407 1.68663 1.07714 1.27129 1.17709 0.91253 0.87232 0.84319 0.84365 0.85488 0.86009 0.87345 0.87793 0.84961 0.93311 0.85012 0.93276 0.88899 0.89238 0.81735 0.82484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.71 11.09 21.83 0.24 -39.47 16 2 C 0.03 1.37 5.50 85.29 0.47 1.84 16 3 Si 0.98 38.18 29.56 68.60 2.03 40.21 16 4 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 5 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 6 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 7 C -0.47 -25.11 9.14 23.48 0.21 -24.90 16 8 H 0.09 4.41 7.85 -2.91 -0.02 4.38 16 9 C 0.22 12.04 6.55 40.29 0.26 12.30 16 10 C -0.29 -13.83 9.83 22.88 0.23 -13.61 16 11 C -0.06 -2.42 10.15 22.39 0.23 -2.19 16 12 C -0.29 -11.78 9.47 22.79 0.22 -11.56 16 13 C 0.14 6.72 6.73 42.15 0.28 7.00 16 14 C -0.02 -0.75 5.88 -20.00 -0.12 -0.86 16 15 C -0.10 -4.18 9.55 22.45 0.21 -3.97 16 16 C -0.08 -2.95 9.71 22.49 0.22 -2.73 16 17 C -0.14 -4.18 5.05 -20.06 -0.10 -4.29 16 18 C 0.57 16.54 7.26 86.77 0.63 17.17 16 19 O -0.58 -20.98 16.52 -3.90 -0.06 -21.05 16 20 N -0.61 -12.92 3.02 -820.80 -2.48 -15.39 16 21 C 0.06 0.88 5.42 86.35 0.47 1.35 16 22 C 0.04 0.64 6.98 72.08 0.50 1.15 16 23 O -0.39 -6.52 10.74 -148.98 -1.60 -8.12 16 24 C 0.05 0.74 6.98 72.08 0.50 1.24 16 25 C 0.07 1.29 6.62 86.35 0.57 1.87 16 26 C -0.08 -2.00 7.36 22.49 0.17 -1.83 16 27 C -0.10 -3.00 9.40 22.45 0.21 -2.79 16 28 N -0.50 -27.11 6.90 -178.21 -1.23 -28.34 16 29 H 0.28 13.33 8.29 -92.71 -0.77 12.56 16 30 H 0.11 4.82 8.06 -2.91 -0.02 4.79 16 31 H 0.14 4.47 8.06 -2.91 -0.02 4.44 16 32 H 0.14 4.38 6.16 -2.91 -0.02 4.36 16 33 H 0.13 6.10 7.14 -2.91 -0.02 6.08 16 34 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 35 H 0.11 1.73 4.70 -2.39 -0.01 1.72 16 36 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.13 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.13 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.09 1.81 7.11 -2.39 -0.02 1.80 16 43 H 0.17 2.71 6.93 -2.91 -0.02 2.69 16 44 H 0.16 3.67 6.15 -2.91 -0.02 3.66 16 Total: -1.00 -70.60 364.09 3.10 -67.50 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: 1.04 Total: 29.45 kcal Atomic # 6 Polarization: -29.96 SS G_CDS: 5.17 Total: -24.80 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -3.47 Total: -83.20 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -1.66 Total: -29.16 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Total: -70.60 3.10 -67.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241530176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.341 kcal (2) G-P(sol) polarization free energy of solvation -70.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds