Wall clock time and date at job start Tue Mar 31 2020 20:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30723 * 1 3 3 Si 1.86801 * 120.00034 * 2 1 4 4 H 1.48502 * 109.47015 * 240.00029 * 3 2 1 5 5 H 1.48506 * 109.47040 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47391 * 119.99818 * 3 2 1 7 7 C 1.40150 * 120.00343 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00280 * 163.56151 * 7 2 1 9 9 C 1.40839 * 119.99597 * 343.56090 * 7 2 1 10 10 C 1.41163 * 120.72181 * 333.01543 * 9 7 2 11 11 C 1.36860 * 118.38482 * 180.29774 * 10 9 7 12 12 C 1.38917 * 119.80336 * 359.45219 * 11 10 9 13 13 N 1.31688 * 121.51382 * 0.56699 * 12 11 10 14 14 C 1.32604 * 121.72457 * 359.71548 * 13 12 11 15 15 C 1.47755 * 119.99470 * 179.97438 * 14 13 12 16 16 C 1.39799 * 120.00996 * 136.18574 * 15 14 13 17 17 C 1.37600 * 119.99403 * 179.72243 * 16 15 14 18 18 C 1.39755 * 120.00782 * 0.57244 * 17 16 15 19 19 C 1.47755 * 119.99371 * 179.72231 * 18 17 16 20 20 O 1.21566 * 120.00315 * 32.33472 * 19 18 17 21 21 N 1.34778 * 119.99604 * 212.33308 * 19 18 17 22 22 C 1.47148 * 120.98341 * 5.18722 * 21 19 18 23 23 C 1.53712 * 108.16208 * 129.43550 * 22 21 19 24 24 O 1.42958 * 109.14699 * 52.53598 * 23 22 21 25 25 C 1.42965 * 114.16874 * 297.28999 * 24 23 22 26 26 C 1.47153 * 120.97796 * 185.47433 * 21 19 18 27 27 C 1.39742 * 120.00661 * 359.70047 * 18 17 16 28 28 C 1.37605 * 120.01076 * 359.97438 * 27 18 17 29 29 H 0.97000 * 119.99678 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.81041 * 0.02562 * 10 9 7 31 31 H 1.08002 * 120.09380 * 179.69895 * 11 10 9 32 32 H 1.08008 * 119.24435 * 180.30617 * 12 11 10 33 33 H 1.07997 * 119.99886 * 359.97438 * 16 15 14 34 34 H 1.08008 * 119.99614 * 180.29561 * 17 16 15 35 35 H 1.09005 * 109.68406 * 249.21158 * 22 21 19 36 36 H 1.08997 * 109.68515 * 9.76446 * 22 21 19 37 37 H 1.09004 * 109.65710 * 292.56954 * 23 22 21 38 38 H 1.09003 * 109.44223 * 172.37663 * 23 22 21 39 39 H 1.09000 * 109.51276 * 302.65521 * 25 24 23 40 40 H 1.09004 * 109.55212 * 182.53260 * 25 24 23 41 41 H 1.08999 * 109.68398 * 350.22908 * 26 21 19 42 42 H 1.09001 * 109.68500 * 110.78947 * 26 21 19 43 43 H 1.08007 * 119.99393 * 180.02562 * 27 18 17 44 44 H 1.07998 * 120.00422 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 3.0950 1.6964 -1.2125 5 1 1.2762 2.7465 -0.0006 6 1 3.0950 1.6965 1.2125 7 6 2.0081 -1.2137 0.0005 8 1 3.0549 -1.2329 -0.2641 9 6 1.3470 -2.4083 0.3463 10 6 0.2261 -2.3900 1.2041 11 6 -0.3759 -3.5795 1.5134 12 6 0.1148 -4.7623 0.9749 13 7 1.1609 -4.7726 0.1752 14 6 1.7936 -3.6564 -0.1598 15 6 2.9641 -3.7124 -1.0597 16 6 3.0943 -2.7832 -2.0961 17 6 4.1874 -2.8321 -2.9305 18 6 5.1614 -3.8179 -2.7494 19 6 6.3319 -3.8739 -3.6494 20 8 6.7869 -2.8492 -4.1193 21 7 6.8951 -5.0611 -3.9493 22 6 6.2959 -6.3225 -3.4854 23 6 6.1636 -7.2630 -4.6940 24 8 7.4300 -7.3654 -5.3493 25 6 7.9120 -6.1318 -5.8877 26 6 8.1308 -5.1337 -4.7449 27 6 5.0285 -4.7503 -1.7171 28 6 3.9390 -4.6978 -0.8782 29 1 -0.4850 0.8401 -0.0004 30 1 -0.1446 -1.4605 1.6101 31 1 -1.2325 -3.5981 2.1711 32 1 -0.3704 -5.6954 1.2211 33 1 2.3391 -2.0246 -2.2393 34 1 4.2904 -2.1113 -3.7282 35 1 6.9373 -6.7779 -2.7308 36 1 5.3111 -6.1270 -3.0613 37 1 5.4249 -6.8645 -5.3895 38 1 5.8490 -8.2494 -4.3533 39 1 7.1797 -5.7293 -6.5876 40 1 8.8551 -6.3040 -6.4064 41 1 8.3615 -4.1507 -5.1554 42 1 8.9538 -5.4715 -4.1150 43 1 5.7815 -5.5118 -1.5771 44 1 3.8366 -5.4182 -0.0801 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241530677.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:47 Heat of formation + Delta-G solvation = -13.791508 kcal Electronic energy + Delta-G solvation = -28497.380963 eV Core-core repulsion = 24572.607963 eV Total energy + Delta-G solvation = -3924.773000 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.59685 -39.06760 -38.37020 -37.33813 -34.92013 -34.32410 -32.41812 -31.42982 -30.87457 -30.32089 -29.09591 -27.82726 -25.89451 -24.53498 -23.80421 -22.34711 -22.00636 -21.32804 -20.43606 -19.53066 -17.62032 -17.34771 -16.76665 -16.34652 -16.06557 -15.70708 -15.63920 -15.27929 -15.04344 -14.58324 -14.48436 -14.24881 -13.89617 -13.74175 -13.19997 -13.10903 -12.99113 -12.64397 -12.43785 -12.24121 -12.10688 -11.77992 -11.65007 -11.58576 -11.55303 -11.25642 -11.13073 -10.93990 -10.70454 -10.54513 -10.33646 -9.98830 -9.71284 -9.52704 -8.79736 -8.65427 -8.45604 -8.22381 -8.17729 -7.52023 -7.05662 -4.66342 1.22192 1.92731 2.45484 2.74069 2.78601 2.93234 2.97003 3.07721 3.13527 3.56296 3.72272 4.28809 4.42157 4.47969 4.55507 4.77018 4.82103 4.99916 5.07089 5.21886 5.30444 5.32168 5.36616 5.43539 5.49978 5.51028 5.56859 5.67158 5.95602 6.00860 6.11286 6.16302 6.27424 6.40840 6.48850 6.60320 6.66108 6.75491 6.81657 6.85647 6.88374 7.08174 7.27130 7.31301 7.40043 7.56984 7.68993 7.75486 8.19636 8.22321 8.43827 8.51345 9.42138 9.82833 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.014478 B = 0.003211 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.565849 B = 8718.830289 C =10358.786650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.258 1.258 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.439 4.439 8 H 0.091 0.909 9 C 0.089 3.911 10 C -0.129 4.129 11 C -0.146 4.146 12 C -0.032 4.032 13 N -0.448 5.448 14 C -0.005 4.005 15 C 0.060 3.940 16 C -0.105 4.105 17 C -0.067 4.067 18 C -0.166 4.166 19 C 0.571 3.429 20 O -0.542 6.542 21 N -0.617 5.617 22 C 0.057 3.943 23 C 0.046 3.954 24 O -0.382 6.382 25 C 0.049 3.951 26 C 0.077 3.923 27 C -0.102 4.102 28 C -0.121 4.121 29 H 0.288 0.712 30 H 0.125 0.875 31 H 0.100 0.900 32 H 0.122 0.878 33 H 0.142 0.858 34 H 0.124 0.876 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.058 0.942 38 H 0.107 0.893 39 H 0.056 0.944 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.074 0.926 43 H 0.125 0.875 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.954 -8.006 -6.024 13.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.145 4.145 3 Si 0.732 3.268 4 H -0.182 1.182 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.467 4.467 8 H 0.109 0.891 9 C 0.085 3.915 10 C -0.155 4.155 11 C -0.166 4.166 12 C -0.195 4.195 13 N -0.155 5.155 14 C -0.142 4.142 15 C 0.058 3.942 16 C -0.123 4.123 17 C -0.086 4.086 18 C -0.170 4.170 19 C 0.362 3.638 20 O -0.420 6.420 21 N -0.352 5.352 22 C -0.066 4.066 23 C -0.032 4.032 24 O -0.301 6.301 25 C -0.029 4.029 26 C -0.045 4.045 27 C -0.120 4.120 28 C -0.140 4.140 29 H 0.099 0.901 30 H 0.143 0.857 31 H 0.118 0.882 32 H 0.140 0.860 33 H 0.160 0.840 34 H 0.142 0.858 35 H 0.096 0.904 36 H 0.136 0.864 37 H 0.076 0.924 38 H 0.125 0.875 39 H 0.074 0.926 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.092 0.908 43 H 0.143 0.857 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.378 -8.234 -6.641 14.137 hybrid contribution -0.303 1.807 0.563 1.917 sum 9.075 -6.427 -6.078 12.673 Atomic orbital electron populations 1.69726 1.07837 1.30330 1.32291 1.26039 0.94783 1.01753 0.91892 0.86311 0.80283 0.79460 0.80743 1.18248 1.20016 1.18423 1.19673 0.98103 0.90538 1.38357 0.89070 1.18306 0.91401 0.92475 0.89352 1.21378 0.98330 0.97045 0.98709 1.21457 0.99885 0.94474 1.00816 1.21657 0.98095 0.96423 1.03278 1.66982 1.06949 1.30731 1.10825 1.19421 1.00399 0.89512 1.04913 1.18689 0.91776 0.92118 0.91572 1.21477 0.97949 0.99389 0.93531 1.21002 0.92789 0.95897 0.98874 1.19562 0.97069 1.00571 0.99767 1.18574 0.82857 0.82363 0.79988 1.90736 1.63972 1.33431 1.53814 1.47987 1.26602 1.06165 1.54451 1.23135 1.01673 0.84342 0.97410 1.23135 0.85710 1.00685 0.93640 1.87943 1.36599 1.31051 1.74470 1.22975 1.00419 0.84823 0.94675 1.22254 0.86712 1.01804 0.93754 1.21270 0.98197 0.97534 0.95022 1.21191 0.93642 0.99398 0.99744 0.90074 0.85749 0.88184 0.86010 0.84045 0.85819 0.90386 0.86377 0.92394 0.87471 0.92591 0.87741 0.88055 0.90786 0.85722 0.85725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.14 11.08 55.56 0.62 -17.53 16 2 C 0.08 1.73 5.17 -17.31 -0.09 1.64 16 3 Si 0.91 17.34 29.59 -169.99 -5.03 12.31 16 4 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 5 H -0.28 -5.11 7.11 56.52 0.40 -4.71 16 6 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 7 C -0.44 -10.44 6.76 -37.88 -0.26 -10.70 16 8 H 0.09 2.14 6.41 -52.49 -0.34 1.80 16 9 C 0.09 2.19 5.54 -106.41 -0.59 1.60 16 10 C -0.13 -3.07 8.73 -38.97 -0.34 -3.41 16 11 C -0.15 -3.16 10.03 -39.83 -0.40 -3.56 16 12 C -0.03 -0.70 11.16 -17.36 -0.19 -0.90 16 13 N -0.45 -10.32 10.14 -9.18 -0.09 -10.41 16 14 C -0.01 -0.13 6.42 -82.25 -0.53 -0.66 16 15 C 0.06 1.24 5.26 -104.84 -0.55 0.69 16 16 C -0.10 -2.08 7.79 -39.23 -0.31 -2.38 16 17 C -0.07 -1.20 9.58 -39.25 -0.38 -1.58 16 18 C -0.17 -2.78 5.39 -104.88 -0.57 -3.34 16 19 C 0.57 9.27 7.43 -12.37 -0.09 9.17 16 20 O -0.54 -10.36 16.22 5.31 0.09 -10.27 16 21 N -0.62 -7.89 3.01 -173.16 -0.52 -8.41 16 22 C 0.06 0.59 4.91 -3.32 -0.02 0.57 16 23 C 0.05 0.43 7.00 37.53 0.26 0.69 16 24 O -0.38 -4.01 10.74 -35.23 -0.38 -4.39 16 25 C 0.05 0.44 6.99 37.31 0.26 0.70 16 26 C 0.08 0.83 6.65 -3.53 -0.02 0.80 16 27 C -0.10 -1.56 7.37 -39.25 -0.29 -1.85 16 28 C -0.12 -2.16 9.64 -39.23 -0.38 -2.53 16 29 H 0.29 6.12 8.29 -40.82 -0.34 5.78 16 30 H 0.12 3.00 6.40 -52.49 -0.34 2.66 16 31 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 32 H 0.12 2.26 8.06 -52.48 -0.42 1.84 16 33 H 0.14 2.97 6.75 -52.49 -0.35 2.61 16 34 H 0.12 2.13 7.95 -52.48 -0.42 1.71 16 35 H 0.08 0.71 7.94 -51.93 -0.41 0.30 16 36 H 0.12 1.29 4.51 -51.93 -0.23 1.06 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.10 1.16 7.06 -51.93 -0.37 0.80 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.13 1.54 5.63 -52.48 -0.30 1.24 16 44 H 0.12 2.15 8.06 -52.49 -0.42 1.72 16 LS Contribution 359.77 15.07 5.42 5.42 Total: -1.00 -28.40 359.77 -9.64 -38.04 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -5.27 Total: 10.27 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -4.47 Total: -15.04 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.00 Total: -36.35 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.29 Total: -14.66 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.31 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.40 -9.64 -38.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241530677.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.248 kcal (2) G-P(sol) polarization free energy of solvation -28.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds