Wall clock time and date at job start Tue Mar 31 2020 20:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30723 * 1 3 3 Si 1.86801 * 120.00034 * 2 1 4 4 H 1.48502 * 109.47015 * 240.00029 * 3 2 1 5 5 H 1.48506 * 109.47040 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47391 * 119.99818 * 3 2 1 7 7 C 1.40150 * 120.00343 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00280 * 163.56151 * 7 2 1 9 9 C 1.40839 * 119.99597 * 343.56090 * 7 2 1 10 10 C 1.41163 * 120.72181 * 333.01543 * 9 7 2 11 11 C 1.36860 * 118.38482 * 180.29774 * 10 9 7 12 12 C 1.38917 * 119.80336 * 359.45219 * 11 10 9 13 13 N 1.31688 * 121.51382 * 0.56699 * 12 11 10 14 14 C 1.32604 * 121.72457 * 359.71548 * 13 12 11 15 15 C 1.47755 * 119.99470 * 179.97438 * 14 13 12 16 16 C 1.39799 * 120.00996 * 136.18574 * 15 14 13 17 17 C 1.37600 * 119.99403 * 179.72243 * 16 15 14 18 18 C 1.39755 * 120.00782 * 0.57244 * 17 16 15 19 19 C 1.47755 * 119.99371 * 179.72231 * 18 17 16 20 20 O 1.21566 * 120.00315 * 32.33472 * 19 18 17 21 21 N 1.34778 * 119.99604 * 212.33308 * 19 18 17 22 22 C 1.47148 * 120.98341 * 5.18722 * 21 19 18 23 23 C 1.53712 * 108.16208 * 129.43550 * 22 21 19 24 24 O 1.42958 * 109.14699 * 52.53598 * 23 22 21 25 25 C 1.42965 * 114.16874 * 297.28999 * 24 23 22 26 26 C 1.47153 * 120.97796 * 185.47433 * 21 19 18 27 27 C 1.39742 * 120.00661 * 359.70047 * 18 17 16 28 28 C 1.37605 * 120.01076 * 359.97438 * 27 18 17 29 29 H 0.97000 * 119.99678 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.81041 * 0.02562 * 10 9 7 31 31 H 1.08002 * 120.09380 * 179.69895 * 11 10 9 32 32 H 1.08008 * 119.24435 * 180.30617 * 12 11 10 33 33 H 1.07997 * 119.99886 * 359.97438 * 16 15 14 34 34 H 1.08008 * 119.99614 * 180.29561 * 17 16 15 35 35 H 1.09005 * 109.68406 * 249.21158 * 22 21 19 36 36 H 1.08997 * 109.68515 * 9.76446 * 22 21 19 37 37 H 1.09004 * 109.65710 * 292.56954 * 23 22 21 38 38 H 1.09003 * 109.44223 * 172.37663 * 23 22 21 39 39 H 1.09000 * 109.51276 * 302.65521 * 25 24 23 40 40 H 1.09004 * 109.55212 * 182.53260 * 25 24 23 41 41 H 1.08999 * 109.68398 * 350.22908 * 26 21 19 42 42 H 1.09001 * 109.68500 * 110.78947 * 26 21 19 43 43 H 1.08007 * 119.99393 * 180.02562 * 27 18 17 44 44 H 1.07998 * 120.00422 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 3.0950 1.6964 -1.2125 5 1 1.2762 2.7465 -0.0006 6 1 3.0950 1.6965 1.2125 7 6 2.0081 -1.2137 0.0005 8 1 3.0549 -1.2329 -0.2641 9 6 1.3470 -2.4083 0.3463 10 6 0.2261 -2.3900 1.2041 11 6 -0.3759 -3.5795 1.5134 12 6 0.1148 -4.7623 0.9749 13 7 1.1609 -4.7726 0.1752 14 6 1.7936 -3.6564 -0.1598 15 6 2.9641 -3.7124 -1.0597 16 6 3.0943 -2.7832 -2.0961 17 6 4.1874 -2.8321 -2.9305 18 6 5.1614 -3.8179 -2.7494 19 6 6.3319 -3.8739 -3.6494 20 8 6.7869 -2.8492 -4.1193 21 7 6.8951 -5.0611 -3.9493 22 6 6.2959 -6.3225 -3.4854 23 6 6.1636 -7.2630 -4.6940 24 8 7.4300 -7.3654 -5.3493 25 6 7.9120 -6.1318 -5.8877 26 6 8.1308 -5.1337 -4.7449 27 6 5.0285 -4.7503 -1.7171 28 6 3.9390 -4.6978 -0.8782 29 1 -0.4850 0.8401 -0.0004 30 1 -0.1446 -1.4605 1.6101 31 1 -1.2325 -3.5981 2.1711 32 1 -0.3704 -5.6954 1.2211 33 1 2.3391 -2.0246 -2.2393 34 1 4.2904 -2.1113 -3.7282 35 1 6.9373 -6.7779 -2.7308 36 1 5.3111 -6.1270 -3.0613 37 1 5.4249 -6.8645 -5.3895 38 1 5.8490 -8.2494 -4.3533 39 1 7.1797 -5.7293 -6.5876 40 1 8.8551 -6.3040 -6.4064 41 1 8.3615 -4.1507 -5.1554 42 1 8.9538 -5.4715 -4.1150 43 1 5.7815 -5.5118 -1.5771 44 1 3.8366 -5.4182 -0.0801 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241530677.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:46 Heat of formation + Delta-G solvation = -29.419995 kcal Electronic energy + Delta-G solvation = -28498.058665 eV Core-core repulsion = 24572.607963 eV Total energy + Delta-G solvation = -3925.450702 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.74274 -40.57285 -39.53823 -38.75292 -36.07647 -35.94390 -33.76310 -32.69240 -32.38535 -31.75579 -30.55834 -28.87315 -27.59618 -25.55091 -25.02899 -23.83243 -23.22753 -22.90756 -21.91613 -20.66316 -19.32842 -18.56204 -18.02285 -17.59389 -17.29001 -17.00071 -16.68961 -16.43358 -16.19837 -15.94456 -15.79394 -15.59610 -15.26491 -15.14905 -14.52017 -14.43495 -14.32057 -14.21190 -13.92183 -13.50303 -13.36518 -13.25043 -13.19755 -12.99596 -12.76477 -12.63074 -12.36460 -12.22646 -12.01464 -11.72171 -11.66630 -11.26642 -11.23340 -10.95845 -10.39781 -10.00596 -9.95929 -9.78293 -9.65440 -9.17245 -8.75817 -6.44963 -0.23183 0.50402 0.78529 1.04627 1.35810 1.44731 1.49856 1.68290 1.82282 2.12946 2.66566 2.83061 2.89066 3.39644 3.64145 3.70693 3.81894 3.89780 4.01052 4.05347 4.11339 4.22217 4.24603 4.45605 4.48406 4.51823 4.55744 4.61973 4.65000 4.73523 4.79719 4.83411 4.88731 4.91242 4.97963 5.08335 5.16352 5.19990 5.29045 5.41947 5.48075 5.71640 5.79685 5.92061 5.98532 6.02945 6.08622 6.17604 6.45693 6.67821 6.75284 6.97543 7.66304 8.15071 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.014478 B = 0.003211 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.565849 B = 8718.830289 C =10358.786650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.045 3.955 3 Si 0.969 3.031 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.260 1.260 7 C -0.459 4.459 8 H 0.084 0.916 9 C 0.061 3.939 10 C -0.153 4.153 11 C -0.145 4.145 12 C -0.037 4.037 13 N -0.460 5.460 14 C -0.015 4.015 15 C 0.031 3.969 16 C -0.112 4.112 17 C -0.072 4.072 18 C -0.161 4.161 19 C 0.568 3.432 20 O -0.578 6.578 21 N -0.610 5.610 22 C 0.052 3.948 23 C 0.046 3.954 24 O -0.390 6.390 25 C 0.052 3.948 26 C 0.074 3.926 27 C -0.079 4.079 28 C -0.118 4.118 29 H 0.295 0.705 30 H 0.114 0.886 31 H 0.131 0.869 32 H 0.156 0.844 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.051 0.949 38 H 0.133 0.867 39 H 0.050 0.950 40 H 0.132 0.868 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.165 0.835 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.619 -9.963 -6.216 15.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.174 4.174 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.187 1.187 6 H -0.184 1.184 7 C -0.487 4.487 8 H 0.102 0.898 9 C 0.056 3.944 10 C -0.179 4.179 11 C -0.165 4.165 12 C -0.199 4.199 13 N -0.167 5.167 14 C -0.152 4.152 15 C 0.030 3.970 16 C -0.131 4.131 17 C -0.091 4.091 18 C -0.165 4.165 19 C 0.359 3.641 20 O -0.459 6.459 21 N -0.343 5.343 22 C -0.070 4.070 23 C -0.031 4.031 24 O -0.309 6.309 25 C -0.025 4.025 26 C -0.048 4.048 27 C -0.097 4.097 28 C -0.137 4.137 29 H 0.106 0.894 30 H 0.132 0.868 31 H 0.149 0.851 32 H 0.173 0.827 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.120 0.880 36 H 0.130 0.870 37 H 0.069 0.931 38 H 0.150 0.850 39 H 0.068 0.932 40 H 0.149 0.851 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.182 0.818 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 11.039 -10.245 -6.834 16.538 hybrid contribution -0.779 2.237 0.558 2.434 sum 10.260 -8.008 -6.276 14.449 Atomic orbital electron populations 1.69754 1.08895 1.31398 1.33058 1.26686 0.95370 1.04143 0.91153 0.85412 0.79126 0.76147 0.80311 1.18518 1.18721 1.18406 1.19723 0.97934 0.91344 1.39720 0.89770 1.18648 0.92216 0.93417 0.90089 1.21435 0.99186 0.97628 0.99682 1.21767 1.00356 0.93697 1.00695 1.22267 0.97545 0.97748 1.02304 1.67067 1.07605 1.30569 1.11477 1.19818 1.01143 0.89325 1.04924 1.18758 0.92306 0.93880 0.92052 1.21242 0.98293 0.99177 0.94416 1.21023 0.92741 0.96617 0.98671 1.19749 0.96720 0.99996 1.00005 1.18455 0.82683 0.83037 0.79905 1.90723 1.65010 1.34956 1.55195 1.48080 1.26783 1.05884 1.53566 1.23345 1.01657 0.83348 0.98643 1.23229 0.85287 1.01658 0.92929 1.87945 1.36936 1.31495 1.74514 1.23053 1.01582 0.84003 0.93883 1.22457 0.86113 1.01888 0.94371 1.21551 0.97779 0.97286 0.93034 1.21283 0.93574 0.98576 1.00255 0.89395 0.86812 0.85131 0.82705 0.86325 0.85663 0.88020 0.86953 0.93052 0.84967 0.93210 0.85056 0.89180 0.89037 0.81816 0.84880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.88 11.08 21.86 0.24 -38.63 16 2 C 0.04 2.09 5.17 85.32 0.44 2.53 16 3 Si 0.97 36.38 29.59 68.60 2.03 38.41 16 4 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 5 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 6 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 7 C -0.46 -22.87 6.76 23.37 0.16 -22.72 16 8 H 0.08 4.17 6.41 -2.91 -0.02 4.15 16 9 C 0.06 3.10 5.54 -21.02 -0.12 2.98 16 10 C -0.15 -7.52 8.73 22.67 0.20 -7.32 16 11 C -0.15 -6.24 10.03 22.11 0.22 -6.01 16 12 C -0.04 -1.57 11.16 84.88 0.95 -0.63 16 13 N -0.46 -21.14 10.14 -182.94 -1.86 -22.99 16 14 C -0.02 -0.72 6.42 42.45 0.27 -0.45 16 15 C 0.03 1.32 5.26 -20.01 -0.11 1.21 16 16 C -0.11 -4.64 7.79 22.50 0.18 -4.47 16 17 C -0.07 -2.63 9.58 22.49 0.22 -2.41 16 18 C -0.16 -5.22 5.39 -20.03 -0.11 -5.33 16 19 C 0.57 17.72 7.43 86.76 0.64 18.36 16 20 O -0.58 -21.91 16.22 -3.92 -0.06 -21.97 16 21 N -0.61 -14.10 3.01 -820.04 -2.47 -16.58 16 22 C 0.05 0.89 4.91 86.50 0.43 1.31 16 23 C 0.05 0.71 7.00 72.22 0.51 1.21 16 24 O -0.39 -6.87 10.74 -148.98 -1.60 -8.47 16 25 C 0.05 0.80 6.99 72.08 0.50 1.31 16 26 C 0.07 1.39 6.65 86.35 0.57 1.96 16 27 C -0.08 -2.23 7.37 22.48 0.17 -2.07 16 28 C -0.12 -4.09 9.64 22.50 0.22 -3.87 16 29 H 0.29 12.84 8.29 -92.71 -0.77 12.07 16 30 H 0.11 5.71 6.40 -2.91 -0.02 5.69 16 31 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 32 H 0.16 5.38 8.06 -2.91 -0.02 5.36 16 33 H 0.12 5.37 6.75 -2.91 -0.02 5.35 16 34 H 0.13 4.47 7.95 -2.91 -0.02 4.45 16 35 H 0.10 1.35 7.94 -2.38 -0.02 1.34 16 36 H 0.11 2.08 4.51 -2.39 -0.01 2.07 16 37 H 0.05 0.86 8.14 -2.39 -0.02 0.85 16 38 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.13 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.09 1.94 7.06 -2.39 -0.02 1.93 16 42 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.16 3.37 5.63 -2.91 -0.02 3.35 16 44 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -63.39 359.77 2.66 -60.73 By element: Atomic # 1 Polarization: 32.86 SS G_CDS: 1.04 Total: 33.90 kcal Atomic # 6 Polarization: -29.73 SS G_CDS: 5.34 Total: -24.39 kcal Atomic # 7 Polarization: -74.12 SS G_CDS: -4.09 Total: -78.20 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -1.66 Total: -30.44 kcal Atomic # 14 Polarization: 36.38 SS G_CDS: 2.03 Total: 38.41 kcal Total: -63.39 2.66 -60.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241530677.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.311 kcal (2) G-P(sol) polarization free energy of solvation -63.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds