Wall clock time and date at job start Tue Mar 31 2020 22:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.62607 * 2 1 4 4 N 1.46500 * 109.47373 * 180.30832 * 3 2 1 5 5 C 1.34770 * 120.00256 * 180.02562 * 4 3 2 6 6 O 1.21360 * 120.00477 * 359.97438 * 5 4 3 7 7 C 1.49348 * 120.00144 * 180.02562 * 5 4 3 8 8 O 1.21382 * 119.99788 * 359.97438 * 7 5 4 9 9 N 1.34770 * 120.00144 * 179.97438 * 7 5 4 10 10 C 1.39937 * 119.99823 * 179.97438 * 9 7 5 11 11 C 1.40453 * 125.98116 * 359.97438 * 10 9 7 12 12 C 1.35215 * 107.86384 * 179.71599 * 11 10 9 13 13 N 1.34979 * 107.87970 * 0.42460 * 12 11 10 14 14 C 1.46500 * 125.97555 * 179.83561 * 13 12 11 15 15 C 1.50706 * 109.47299 * 124.71172 * 14 13 12 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 N 1.31273 * 125.97523 * 179.97438 * 10 9 7 24 24 O 1.43751 * 109.51095 * 120.32156 * 2 1 3 25 25 C 1.44781 * 104.81755 * 95.49574 * 24 2 1 26 26 C 1.54906 * 101.72188 * 36.09907 * 25 24 2 27 27 O 1.43371 * 109.63304 * 239.61359 * 2 1 3 28 28 H 1.09003 * 109.47311 * 59.99833 * 1 2 3 29 29 H 1.09008 * 109.47294 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47268 * 299.99251 * 1 2 3 31 31 H 1.09002 * 109.47102 * 60.30909 * 3 2 1 32 32 H 1.08996 * 109.47676 * 300.31430 * 3 2 1 33 33 H 0.97008 * 119.99919 * 0.02562 * 4 3 2 34 34 H 0.96999 * 120.00441 * 359.97438 * 9 7 5 35 35 H 1.07994 * 126.06888 * 359.97438 * 11 10 9 36 36 H 1.08004 * 126.05929 * 180.25923 * 12 11 10 37 37 H 1.09004 * 109.47078 * 4.71934 * 14 13 12 38 38 H 1.08993 * 109.47364 * 244.71705 * 14 13 12 39 39 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 40 40 H 1.09003 * 110.97618 * 277.99395 * 25 24 2 41 41 H 1.08997 * 111.00837 * 154.22511 * 25 24 2 42 42 H 1.08998 * 110.70039 * 206.04066 * 26 25 24 43 43 H 1.09006 * 110.69538 * 82.84084 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0438 1.4411 0.0000 4 7 3.5088 1.4372 -0.0074 5 6 4.1858 2.6025 -0.0082 6 8 3.5820 3.6552 -0.0033 7 6 5.6793 2.5985 -0.0164 8 8 6.2833 1.5457 -0.0218 9 7 6.3563 3.7639 -0.0177 10 6 7.7556 3.7600 -0.0248 11 6 8.5777 2.6212 -0.0305 12 6 9.8639 3.0382 -0.0429 13 7 9.8620 4.3880 -0.0354 14 6 11.0464 5.2502 -0.0407 15 6 10.9665 6.2065 -1.2028 16 1 10.1180 6.1752 -1.8703 17 6 11.9763 7.1210 -1.4138 18 7 13.0069 7.1626 -0.5978 19 14 11.8769 8.3068 -2.8538 20 1 13.0746 9.1847 -2.8558 21 1 11.8235 7.5394 -4.1241 22 1 10.6535 9.1387 -2.7263 23 7 8.5297 4.8203 -0.0273 24 8 2.0101 -0.6841 1.1696 25 6 2.2601 -2.0403 0.7289 26 6 2.7855 -1.8117 -0.7103 27 8 2.0117 -0.6831 -1.1649 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.6864 1.9543 0.8928 32 1 1.6774 1.9576 -0.8871 33 1 3.9916 0.5958 -0.0118 34 1 5.8736 4.6052 -0.0137 35 1 8.2421 1.5948 -0.0298 36 1 10.7378 2.4037 -0.0538 37 1 11.9422 4.6365 -0.1363 38 1 11.0898 5.8137 0.8912 39 1 13.0585 6.5471 0.1501 40 1 1.3394 -2.6237 0.7200 41 1 3.0174 -2.5195 1.3493 42 1 2.5948 -2.6855 -1.3334 43 1 3.8484 -1.5703 -0.6986 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254129821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:33 Heat of formation + Delta-G solvation = -67.514881 kcal Electronic energy + Delta-G solvation = -28610.005796 eV Core-core repulsion = 24272.053913 eV Total energy + Delta-G solvation = -4337.951883 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.43589 -40.99182 -40.14802 -38.51413 -35.71315 -35.58550 -34.78415 -33.68768 -32.57359 -30.98598 -29.49421 -29.08882 -27.82966 -26.44348 -24.57450 -23.82726 -22.90261 -21.86862 -21.36104 -20.54490 -19.79283 -18.66407 -17.81159 -17.32029 -17.23015 -16.82310 -16.53709 -16.25531 -15.93665 -15.77910 -15.17194 -14.73377 -14.69349 -14.28909 -14.11006 -13.80270 -13.75915 -13.66729 -13.41981 -13.30000 -12.94539 -12.80236 -12.68777 -12.53381 -12.33130 -12.02396 -11.92184 -11.53568 -11.19250 -10.84504 -10.76359 -10.59052 -10.35344 -10.16257 -10.09062 -9.62795 -9.60370 -9.04134 -8.59704 -8.31697 -7.64645 -6.59918 -4.34186 1.15518 1.97092 2.57450 2.77066 2.97024 3.08738 3.22577 3.37943 3.40172 3.58678 3.59261 3.75644 3.95593 4.08475 4.28637 4.35454 4.40584 4.47010 4.55285 4.80583 4.97817 5.04058 5.07197 5.11063 5.13613 5.24830 5.32303 5.33041 5.51074 5.61395 5.82168 6.00827 6.23266 6.31852 6.46565 6.50496 6.69919 6.81684 7.16041 7.26501 7.53971 7.65788 7.75663 7.89132 8.31402 8.44056 8.58831 9.33869 10.77816 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026045 B = 0.001974 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.784148 B =14178.320164 C =14672.014738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.243 3.757 3 C 0.118 3.882 4 N -0.691 5.691 5 C 0.517 3.483 6 O -0.515 6.515 7 C 0.515 3.485 8 O -0.500 6.500 9 N -0.598 5.598 10 C 0.253 3.747 11 C -0.283 4.283 12 C 0.053 3.947 13 N -0.313 5.313 14 C 0.248 3.752 15 C -0.609 4.609 16 H 0.064 0.936 17 C 0.023 3.977 18 N -0.904 5.904 19 Si 1.077 2.923 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.285 1.285 23 N -0.291 5.291 24 O -0.366 6.366 25 C 0.014 3.986 26 C 0.015 3.985 27 O -0.372 6.372 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.413 0.587 34 H 0.424 0.576 35 H 0.162 0.838 36 H 0.170 0.830 37 H 0.048 0.952 38 H 0.036 0.964 39 H 0.267 0.733 40 H 0.078 0.922 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.745 -20.356 2.352 31.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.165 3.835 3 C -0.006 4.006 4 N -0.345 5.345 5 C 0.297 3.703 6 O -0.390 6.390 7 C 0.295 3.705 8 O -0.373 6.373 9 N -0.246 5.246 10 C 0.000 4.000 11 C -0.314 4.314 12 C -0.097 4.097 13 N -0.095 5.095 14 C 0.130 3.870 15 C -0.647 4.647 16 H 0.082 0.918 17 C -0.182 4.182 18 N -0.539 5.539 19 Si 0.904 3.096 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.211 1.211 23 N -0.122 5.122 24 O -0.286 6.286 25 C -0.062 4.062 26 C -0.061 4.061 27 O -0.293 6.293 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.250 0.750 34 H 0.261 0.739 35 H 0.180 0.820 36 H 0.188 0.812 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.132 0.868 42 H 0.123 0.877 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -22.835 -17.598 1.614 28.874 hybrid contribution -0.795 -2.322 0.793 2.580 sum -23.629 -19.920 2.408 30.999 Atomic orbital electron populations 1.22304 0.92197 1.04002 1.04115 1.23667 0.93916 0.90269 0.75613 1.21883 0.79537 0.94641 1.04556 1.45411 1.06979 1.08968 1.73101 1.19843 0.87930 0.84459 0.78047 1.90798 1.69836 1.30632 1.47725 1.19870 0.88056 0.83981 0.78633 1.90697 1.69153 1.30723 1.46735 1.41985 1.03273 1.09863 1.69505 1.19014 0.83108 0.93567 1.04333 1.21520 0.90490 0.99657 1.19770 1.22578 0.99090 0.85705 1.02326 1.48872 1.04575 1.04542 1.51490 1.19812 0.78069 0.89697 0.99407 1.22096 1.09985 1.19996 1.12647 0.91785 1.25933 0.91992 0.98114 1.02113 1.70858 1.30035 1.37811 1.15200 0.83417 0.76258 0.75688 0.74275 1.20516 1.21218 1.21073 1.77435 0.88056 1.19710 1.27041 1.89335 1.86029 1.21968 1.31312 1.24451 1.01846 0.84826 0.95068 1.24326 0.96939 0.89834 0.95039 1.88975 1.69647 1.41899 1.28803 0.90076 0.91073 0.89990 0.88839 0.88607 0.74999 0.73851 0.82022 0.81242 0.93462 0.94591 0.92286 0.90347 0.86832 0.87729 0.89984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 9.19 37.15 0.34 -0.52 16 2 C 0.24 1.75 1.02 -26.73 -0.03 1.72 16 3 C 0.12 1.00 5.09 -4.04 -0.02 0.98 16 4 N -0.69 -7.25 5.33 -60.77 -0.32 -7.57 16 5 C 0.52 6.78 7.89 -11.64 -0.09 6.68 16 6 O -0.51 -7.59 16.48 5.49 0.09 -7.50 16 7 C 0.51 7.75 7.85 -11.64 -0.09 7.66 16 8 O -0.50 -8.00 13.60 5.47 0.07 -7.92 16 9 N -0.60 -9.97 5.43 -11.58 -0.06 -10.04 16 10 C 0.25 5.11 8.10 -154.55 -1.25 3.85 16 11 C -0.28 -5.43 9.60 -39.82 -0.38 -5.81 16 12 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 13 N -0.31 -7.24 3.67 -62.56 -0.23 -7.47 16 14 C 0.25 6.22 5.57 -5.19 -0.03 6.19 16 15 C -0.61 -17.09 9.24 -34.44 -0.32 -17.41 16 16 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 17 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 18 N -0.90 -26.23 13.65 55.43 0.76 -25.47 16 19 Si 1.08 24.99 29.90 -169.99 -5.08 19.91 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 N -0.29 -6.79 12.42 31.41 0.39 -6.40 16 24 O -0.37 -2.79 10.76 -59.04 -0.64 -3.42 16 25 C 0.01 0.07 7.91 38.16 0.30 0.37 16 26 C 0.01 0.08 7.67 38.16 0.29 0.37 16 27 O -0.37 -2.91 10.61 -59.04 -0.63 -3.54 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.41 4.10 6.90 -40.82 -0.28 3.82 16 34 H 0.42 6.50 8.29 -40.82 -0.34 6.16 16 35 H 0.16 2.89 5.91 -52.49 -0.31 2.57 16 36 H 0.17 2.63 8.06 -52.48 -0.42 2.20 16 37 H 0.05 1.14 7.94 -51.93 -0.41 0.72 16 38 H 0.04 0.94 8.00 -51.93 -0.42 0.52 16 39 H 0.27 7.56 7.22 -40.82 -0.29 7.26 16 40 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.08 0.44 7.76 -51.93 -0.40 0.03 16 LS Contribution 372.24 15.07 5.61 5.61 Total: -1.00 -34.32 372.24 -7.08 -41.40 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -5.47 Total: 6.94 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -1.57 Total: 5.48 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.53 Total: -56.95 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -1.10 Total: -22.38 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.08 Total: 19.91 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.32 -7.08 -41.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254129821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.115 kcal (2) G-P(sol) polarization free energy of solvation -34.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds