Wall clock time and date at job start Tue Mar 31 2020 22:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.62607 * 2 1 4 4 N 1.46500 * 109.47373 * 180.30832 * 3 2 1 5 5 C 1.34770 * 120.00256 * 180.02562 * 4 3 2 6 6 O 1.21360 * 120.00477 * 359.97438 * 5 4 3 7 7 C 1.49348 * 120.00144 * 180.02562 * 5 4 3 8 8 O 1.21382 * 119.99788 * 359.97438 * 7 5 4 9 9 N 1.34770 * 120.00144 * 179.97438 * 7 5 4 10 10 C 1.39937 * 119.99823 * 179.97438 * 9 7 5 11 11 C 1.40453 * 125.98116 * 359.97438 * 10 9 7 12 12 C 1.35215 * 107.86384 * 179.71599 * 11 10 9 13 13 N 1.34979 * 107.87970 * 0.42460 * 12 11 10 14 14 C 1.46500 * 125.97555 * 179.83561 * 13 12 11 15 15 C 1.50706 * 109.47299 * 124.71172 * 14 13 12 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 N 1.31273 * 125.97523 * 179.97438 * 10 9 7 24 24 O 1.43751 * 109.51095 * 120.32156 * 2 1 3 25 25 C 1.44781 * 104.81755 * 95.49574 * 24 2 1 26 26 C 1.54906 * 101.72188 * 36.09907 * 25 24 2 27 27 O 1.43371 * 109.63304 * 239.61359 * 2 1 3 28 28 H 1.09003 * 109.47311 * 59.99833 * 1 2 3 29 29 H 1.09008 * 109.47294 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47268 * 299.99251 * 1 2 3 31 31 H 1.09002 * 109.47102 * 60.30909 * 3 2 1 32 32 H 1.08996 * 109.47676 * 300.31430 * 3 2 1 33 33 H 0.97008 * 119.99919 * 0.02562 * 4 3 2 34 34 H 0.96999 * 120.00441 * 359.97438 * 9 7 5 35 35 H 1.07994 * 126.06888 * 359.97438 * 11 10 9 36 36 H 1.08004 * 126.05929 * 180.25923 * 12 11 10 37 37 H 1.09004 * 109.47078 * 4.71934 * 14 13 12 38 38 H 1.08993 * 109.47364 * 244.71705 * 14 13 12 39 39 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 40 40 H 1.09003 * 110.97618 * 277.99395 * 25 24 2 41 41 H 1.08997 * 111.00837 * 154.22511 * 25 24 2 42 42 H 1.08998 * 110.70039 * 206.04066 * 26 25 24 43 43 H 1.09006 * 110.69538 * 82.84084 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0438 1.4411 0.0000 4 7 3.5088 1.4372 -0.0074 5 6 4.1858 2.6025 -0.0082 6 8 3.5820 3.6552 -0.0033 7 6 5.6793 2.5985 -0.0164 8 8 6.2833 1.5457 -0.0218 9 7 6.3563 3.7639 -0.0177 10 6 7.7556 3.7600 -0.0248 11 6 8.5777 2.6212 -0.0305 12 6 9.8639 3.0382 -0.0429 13 7 9.8620 4.3880 -0.0354 14 6 11.0464 5.2502 -0.0407 15 6 10.9665 6.2065 -1.2028 16 1 10.1180 6.1752 -1.8703 17 6 11.9763 7.1210 -1.4138 18 7 13.0069 7.1626 -0.5978 19 14 11.8769 8.3068 -2.8538 20 1 13.0746 9.1847 -2.8558 21 1 11.8235 7.5394 -4.1241 22 1 10.6535 9.1387 -2.7263 23 7 8.5297 4.8203 -0.0273 24 8 2.0101 -0.6841 1.1696 25 6 2.2601 -2.0403 0.7289 26 6 2.7855 -1.8117 -0.7103 27 8 2.0117 -0.6831 -1.1649 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.6864 1.9543 0.8928 32 1 1.6774 1.9576 -0.8871 33 1 3.9916 0.5958 -0.0118 34 1 5.8736 4.6052 -0.0137 35 1 8.2421 1.5948 -0.0298 36 1 10.7378 2.4037 -0.0538 37 1 11.9422 4.6365 -0.1363 38 1 11.0898 5.8137 0.8912 39 1 13.0585 6.5471 0.1501 40 1 1.3394 -2.6237 0.7200 41 1 3.0174 -2.5195 1.3493 42 1 2.5948 -2.6855 -1.3334 43 1 3.8484 -1.5703 -0.6986 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254129821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:32 Heat of formation + Delta-G solvation = -93.371299 kcal Electronic energy + Delta-G solvation = -28611.127014 eV Core-core repulsion = 24272.053913 eV Total energy + Delta-G solvation = -4339.073101 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.56696 -41.93946 -41.33331 -39.71108 -36.88444 -36.13147 -36.07511 -35.48080 -33.15297 -32.77660 -31.10992 -29.49757 -28.88810 -28.02796 -25.91928 -24.69531 -24.21443 -22.77635 -22.42962 -21.99210 -21.10624 -19.79156 -19.24708 -18.45594 -18.33772 -17.81659 -17.62855 -17.34022 -16.79664 -16.62756 -16.55261 -16.09072 -15.66746 -15.60727 -15.42304 -15.05303 -14.97734 -14.41687 -14.31445 -14.19280 -13.98347 -13.87390 -13.80914 -13.64462 -13.27492 -13.21103 -13.08284 -12.81179 -12.62366 -12.29754 -12.18024 -11.95997 -11.70371 -11.17186 -11.04404 -11.00939 -10.72709 -10.69789 -10.49929 -9.93589 -9.32176 -8.79129 -6.56473 -0.04205 0.74911 1.03299 1.50985 1.57196 1.65099 1.70057 1.79489 2.16952 2.35051 2.44007 2.49796 2.72626 3.00534 3.14465 3.49615 3.66830 3.79110 3.92021 4.07722 4.08456 4.16801 4.29571 4.48831 4.49298 4.55551 4.60002 4.69838 4.73105 4.74349 4.75315 4.80849 4.87457 4.90822 4.96852 5.17683 5.51842 5.66897 5.70494 5.88746 6.00543 6.03504 6.24282 6.39789 6.44733 6.67350 6.84836 7.18470 8.58122 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026045 B = 0.001974 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.784148 B =14178.320164 C =14672.014738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.243 3.757 3 C 0.111 3.889 4 N -0.676 5.676 5 C 0.524 3.476 6 O -0.533 6.533 7 C 0.519 3.481 8 O -0.506 6.506 9 N -0.600 5.600 10 C 0.260 3.740 11 C -0.285 4.285 12 C 0.060 3.940 13 N -0.339 5.339 14 C 0.258 3.742 15 C -0.623 4.623 16 H 0.044 0.956 17 C -0.018 4.018 18 N -0.922 5.922 19 Si 1.119 2.881 20 H -0.275 1.275 21 H -0.270 1.270 22 H -0.277 1.277 23 N -0.340 5.340 24 O -0.385 6.385 25 C 0.012 3.988 26 C 0.008 3.992 27 O -0.390 6.390 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.417 0.583 34 H 0.429 0.571 35 H 0.179 0.821 36 H 0.208 0.792 37 H 0.059 0.941 38 H 0.018 0.982 39 H 0.261 0.739 40 H 0.094 0.906 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.020 -22.096 1.845 33.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.166 3.834 3 C -0.012 4.012 4 N -0.329 5.329 5 C 0.303 3.697 6 O -0.410 6.410 7 C 0.300 3.700 8 O -0.379 6.379 9 N -0.249 5.249 10 C 0.006 3.994 11 C -0.315 4.315 12 C -0.088 4.088 13 N -0.121 5.121 14 C 0.139 3.861 15 C -0.661 4.661 16 H 0.063 0.937 17 C -0.218 4.218 18 N -0.558 5.558 19 Si 0.940 3.060 20 H -0.199 1.199 21 H -0.196 1.196 22 H -0.203 1.203 23 N -0.171 5.171 24 O -0.306 6.306 25 C -0.063 4.063 26 C -0.067 4.067 27 O -0.311 6.311 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.254 0.746 34 H 0.267 0.733 35 H 0.196 0.804 36 H 0.225 0.775 37 H 0.077 0.923 38 H 0.036 0.964 39 H 0.071 0.929 40 H 0.113 0.887 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -24.147 -19.406 1.122 30.999 hybrid contribution -0.502 -1.957 0.995 2.253 sum -24.648 -21.363 2.117 32.686 Atomic orbital electron populations 1.22298 0.90567 1.04743 1.04676 1.23702 0.94907 0.89212 0.75561 1.22140 0.77919 0.96266 1.04916 1.45437 1.07963 1.08181 1.71271 1.19427 0.86744 0.84990 0.78500 1.90800 1.69676 1.31338 1.49155 1.20269 0.88964 0.83260 0.77526 1.90674 1.69643 1.30863 1.46734 1.42095 1.02025 1.10846 1.69943 1.19332 0.84458 0.93327 1.02289 1.21770 0.90251 0.99992 1.19525 1.23266 1.00722 0.84556 1.00232 1.48648 1.04054 1.05544 1.53826 1.19478 0.79481 0.89727 0.97434 1.22282 1.09349 1.21102 1.13321 0.93725 1.27241 0.91435 0.99370 1.03790 1.70948 1.30809 1.38304 1.15734 0.82889 0.76615 0.74301 0.72233 1.19942 1.19567 1.20291 1.77346 0.88613 1.21566 1.29593 1.89311 1.86236 1.23442 1.31635 1.24657 1.03085 0.83809 0.94760 1.24511 0.96491 0.89835 0.95898 1.88960 1.70059 1.42756 1.29351 0.89617 0.90238 0.89355 0.88427 0.88294 0.74553 0.73288 0.80426 0.77488 0.92321 0.96403 0.92895 0.88738 0.85476 0.85736 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 9.19 71.98 0.66 -0.73 16 2 C 0.24 3.12 1.02 30.59 0.03 3.15 16 3 C 0.11 1.75 5.09 86.38 0.44 2.19 16 4 N -0.68 -13.35 5.33 -464.53 -2.48 -15.83 16 5 C 0.52 13.24 7.89 87.24 0.69 13.93 16 6 O -0.53 -15.34 16.48 -3.28 -0.05 -15.40 16 7 C 0.52 15.15 7.85 87.24 0.69 15.83 16 8 O -0.51 -15.45 13.60 -3.35 -0.05 -15.49 16 9 N -0.60 -19.81 5.43 -308.90 -1.68 -21.49 16 10 C 0.26 10.44 8.10 133.40 1.08 11.52 16 11 C -0.28 -10.54 9.60 22.11 0.21 -10.32 16 12 C 0.06 2.27 11.43 83.51 0.95 3.23 16 13 N -0.34 -15.73 3.67 -351.84 -1.29 -17.02 16 14 C 0.26 13.14 5.57 85.64 0.48 13.62 16 15 C -0.62 -35.43 9.24 25.60 0.24 -35.19 16 16 H 0.04 2.67 7.81 -2.91 -0.02 2.64 16 17 C -0.02 -1.03 5.46 84.65 0.46 -0.57 16 18 N -0.92 -53.77 13.65 21.45 0.29 -53.47 16 19 Si 1.12 50.04 29.90 68.60 2.05 52.09 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 22 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 23 N -0.34 -16.08 12.42 -54.54 -0.68 -16.75 16 24 O -0.39 -5.20 10.76 -126.22 -1.36 -6.56 16 25 C 0.01 0.09 7.91 72.63 0.57 0.66 16 26 C 0.01 0.07 7.67 72.63 0.56 0.63 16 27 O -0.39 -5.46 10.61 -126.22 -1.34 -6.80 16 28 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.08 0.54 8.14 -2.38 -0.02 0.53 16 30 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.42 7.71 6.90 -92.70 -0.64 7.07 16 34 H 0.43 13.20 8.29 -92.71 -0.77 12.44 16 35 H 0.18 5.97 5.91 -2.91 -0.02 5.95 16 36 H 0.21 5.89 8.06 -2.91 -0.02 5.87 16 37 H 0.06 2.83 7.94 -2.39 -0.02 2.81 16 38 H 0.02 0.97 8.00 -2.39 -0.02 0.95 16 39 H 0.26 15.02 7.22 -92.71 -0.67 14.35 16 40 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.08 0.71 7.76 -2.38 -0.02 0.69 16 Total: -1.00 -73.37 372.24 0.25 -73.12 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: -0.23 Total: 25.66 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 7.06 Total: 17.94 kcal Atomic # 7 Polarization: -118.74 SS G_CDS: -5.83 Total: -124.57 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -2.80 Total: -44.24 kcal Atomic # 14 Polarization: 50.04 SS G_CDS: 2.05 Total: 52.09 kcal Total: -73.37 0.25 -73.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254129821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.252 kcal (2) G-P(sol) polarization free energy of solvation -73.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds