Wall clock time and date at job start Tue Mar 31 2020 20:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99975 * 2 1 4 4 H 1.48497 * 109.47023 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46752 * 299.99747 * 3 2 1 6 6 H 1.48495 * 109.47008 * 59.99900 * 3 2 1 7 7 C 1.37876 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00100 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99947 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47002 * 180.02562 * 9 7 2 11 11 N 1.46504 * 109.46958 * 180.02562 * 10 9 7 12 12 C 1.34775 * 120.00088 * 179.97438 * 11 10 9 13 13 O 1.21351 * 119.99936 * 0.02562 * 12 11 10 14 14 C 1.49452 * 119.99928 * 179.97438 * 12 11 10 15 15 O 1.21343 * 119.99854 * 0.02562 * 14 12 11 16 16 N 1.34774 * 119.99510 * 180.02562 * 14 12 11 17 17 C 1.46504 * 119.99670 * 180.02562 * 16 14 12 18 18 C 1.52995 * 109.47329 * 179.97438 * 17 16 14 19 19 C 1.53004 * 109.47487 * 180.02562 * 18 17 16 20 20 O 1.42893 * 109.47267 * 180.02562 * 19 18 17 21 21 C 1.35956 * 117.00026 * 179.97438 * 20 19 18 22 22 C 1.38657 * 120.06128 * 359.97438 * 21 20 19 23 23 C 1.38184 * 119.96964 * 180.02562 * 22 21 20 24 24 C 1.38265 * 120.09281 * 359.97438 * 23 22 21 25 25 C 1.38248 * 120.12705 * 0.02562 * 24 23 22 26 26 C 1.38332 * 120.03366 * 359.97438 * 25 24 23 27 27 F 1.35103 * 120.05240 * 180.02562 * 26 25 24 28 28 H 0.97003 * 120.00041 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46357 * 60.00123 * 9 7 2 30 30 H 1.09001 * 109.47083 * 300.00429 * 9 7 2 31 31 H 1.08996 * 109.47265 * 59.99881 * 10 9 7 32 32 H 1.09001 * 109.47349 * 300.00017 * 10 9 7 33 33 H 0.97006 * 119.99607 * 0.02562 * 11 10 9 34 34 H 0.96992 * 120.00602 * 359.97438 * 16 14 12 35 35 H 1.09004 * 109.47195 * 59.99954 * 17 16 14 36 36 H 1.09001 * 109.46985 * 299.99979 * 17 16 14 37 37 H 1.09007 * 109.47098 * 60.00138 * 18 17 16 38 38 H 1.09001 * 109.47491 * 300.00185 * 18 17 16 39 39 H 1.08994 * 109.46599 * 59.99869 * 19 18 17 40 40 H 1.09001 * 109.46881 * 300.00527 * 19 18 17 41 41 H 1.08004 * 120.01774 * 0.03769 * 22 21 20 42 42 H 1.08000 * 119.95526 * 180.27319 * 23 22 21 43 43 H 1.08001 * 119.93128 * 179.97438 * 24 23 22 44 44 H 1.07998 * 119.98480 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0027 11 7 1.5128 -4.9308 0.0033 12 6 2.1867 -6.0980 0.0037 13 8 3.4002 -6.0980 0.0041 14 6 1.4394 -7.3923 0.0048 15 8 0.2260 -7.3922 0.0048 16 7 2.1134 -8.5594 0.0057 17 6 1.3809 -9.8282 0.0062 18 6 2.3750 -10.9911 0.0066 19 6 1.6101 -12.3162 0.0065 20 8 2.5387 -13.4023 0.0075 21 6 2.0190 -14.6586 0.0081 22 6 0.6446 -14.8418 0.0083 23 6 0.1185 -16.1196 0.0094 24 6 0.9608 -17.2161 0.0098 25 6 2.3318 -17.0380 0.0096 26 6 2.8641 -15.7612 0.0085 27 9 4.2038 -15.5867 0.0078 28 1 -0.4850 0.8401 -0.0004 29 1 0.6241 -2.5574 -0.8881 30 1 0.6247 -2.5563 0.8919 31 1 2.8720 -3.6035 0.8926 32 1 2.8720 -3.6051 -0.8873 33 1 0.5427 -4.9308 0.0026 34 1 3.0833 -8.5594 0.0053 35 1 0.7545 -9.8865 -0.8840 36 1 0.7539 -9.8854 0.8960 37 1 3.0018 -10.9330 0.8966 38 1 3.0017 -10.9337 -0.8834 39 1 0.9837 -12.3739 -0.8836 40 1 0.9831 -12.3738 0.8963 41 1 -0.0145 -13.9862 0.0073 42 1 -0.9520 -16.2620 0.0051 43 1 0.5468 -18.2136 0.0111 44 1 2.9875 -17.8961 0.0095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256913078.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:35 Heat of formation + Delta-G solvation = -141.669213 kcal Electronic energy + Delta-G solvation = -26607.224986 eV Core-core repulsion = 22246.137568 eV Total energy + Delta-G solvation = -4361.087418 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.19613 -40.62648 -40.41453 -38.45773 -38.06983 -36.06439 -35.01502 -32.94065 -32.53403 -31.25302 -30.21892 -29.83311 -27.11530 -25.40080 -23.93210 -23.10144 -22.70186 -21.97017 -21.05216 -20.17832 -19.03401 -18.23667 -17.64285 -17.12331 -17.10899 -16.81868 -16.30660 -16.15959 -15.71032 -15.67340 -15.27651 -14.92097 -14.87295 -14.78797 -14.48831 -14.35000 -13.98761 -13.48301 -13.32735 -13.07430 -12.77277 -12.75798 -12.38489 -12.34161 -12.09032 -12.07664 -11.60670 -11.52145 -11.26777 -11.24779 -11.08924 -10.66327 -10.42682 -9.82456 -9.51717 -9.47728 -9.47306 -9.22107 -8.75172 -8.72565 -8.43724 -6.11720 -4.15370 0.56042 0.69686 1.55401 2.20487 2.67614 3.02093 3.27083 3.34825 3.37708 3.39370 3.69666 3.81723 4.12956 4.24746 4.27282 4.37483 4.41085 4.45299 4.58592 4.67241 4.72524 4.76066 4.84512 4.96090 5.11451 5.25432 5.38584 5.46925 5.48794 5.54105 5.61933 5.82125 5.98727 6.09000 6.15750 6.21745 6.56597 6.66818 6.73752 6.96341 7.43969 7.55872 7.61274 7.85601 7.86959 8.18567 8.30992 8.90508 9.49811 10.99800 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.043119 B = 0.001289 C = 0.001254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.206014 B =21709.914749 C =22322.767903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.061 0.939 9 C 0.010 3.990 10 C 0.118 3.882 11 N -0.685 5.685 12 C 0.497 3.503 13 O -0.533 6.533 14 C 0.510 3.490 15 O -0.519 6.519 16 N -0.706 5.706 17 C 0.122 3.878 18 C -0.134 4.134 19 C 0.063 3.937 20 O -0.306 6.306 21 C 0.100 3.900 22 C -0.183 4.183 23 C -0.089 4.089 24 C -0.131 4.131 25 C -0.117 4.117 26 C 0.067 3.933 27 F -0.132 7.132 28 H 0.262 0.738 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.411 0.589 34 H 0.415 0.585 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.140 0.860 42 H 0.133 0.867 43 H 0.135 0.865 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.202 -35.994 0.014 35.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.079 0.921 9 C -0.027 4.027 10 C -0.003 4.003 11 N -0.336 5.336 12 C 0.277 3.723 13 O -0.411 6.411 14 C 0.291 3.709 15 O -0.394 6.394 16 N -0.361 5.361 17 C -0.001 4.001 18 C -0.171 4.171 19 C -0.013 4.013 20 O -0.220 6.220 21 C 0.054 3.946 22 C -0.202 4.202 23 C -0.107 4.107 24 C -0.149 4.149 25 C -0.136 4.136 26 C 0.047 3.953 27 F -0.110 7.110 28 H 0.072 0.928 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.246 0.754 34 H 0.251 0.749 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.157 0.843 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.287 -35.751 0.015 35.752 hybrid contribution 0.363 0.971 -0.001 1.037 sum 0.650 -34.780 0.014 34.786 Atomic orbital electron populations 1.69968 1.06107 1.26854 1.50144 1.24998 0.94887 0.99446 0.94904 0.86447 0.80131 0.83284 0.77641 1.19561 1.20914 1.20920 1.21053 0.93271 0.90223 1.51637 0.92096 1.19367 0.94199 0.90890 0.98264 1.21949 0.96285 0.80703 1.01391 1.46239 1.11800 1.05787 1.69782 1.19926 0.87704 0.85203 0.79510 1.90738 1.13195 1.87500 1.49644 1.20468 0.87710 0.85531 0.77237 1.90760 1.13442 1.87665 1.47528 1.45649 1.11579 1.04699 1.74164 1.21210 0.94204 0.81326 1.03401 1.21698 0.99016 0.91139 1.05289 1.22716 0.91713 0.84520 1.02329 1.86113 1.35848 1.11575 1.88425 1.19011 0.92090 0.84381 0.99122 1.21244 0.92795 0.99373 1.06770 1.21073 1.00506 0.91559 0.97570 1.20970 0.92221 0.99629 1.02062 1.21065 0.96571 0.94891 1.01025 1.17045 0.77114 0.92075 1.09066 1.91520 1.29172 1.96141 1.94216 0.92823 0.95636 0.95647 0.91806 0.91817 0.75369 0.74873 0.90540 0.90527 0.89512 0.89518 0.91118 0.91125 0.84266 0.84877 0.84752 0.84004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.95 13.29 55.43 0.74 -25.22 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.29 9.11 -34.44 -0.31 -14.61 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.25 5.09 -27.88 -0.14 0.11 16 10 C 0.12 2.44 5.61 -4.04 -0.02 2.42 16 11 N -0.69 -12.24 5.55 -60.73 -0.34 -12.58 16 12 C 0.50 8.33 7.89 -11.58 -0.09 8.24 16 13 O -0.53 -9.86 16.48 5.50 0.09 -9.77 16 14 C 0.51 7.24 7.89 -11.59 -0.09 7.15 16 15 O -0.52 -8.35 16.48 5.50 0.09 -8.26 16 16 N -0.71 -7.37 5.55 -60.73 -0.34 -7.71 16 17 C 0.12 0.93 5.67 -4.04 -0.02 0.90 16 18 C -0.13 -0.79 5.70 -26.73 -0.15 -0.94 16 19 C 0.06 0.36 4.74 37.16 0.18 0.53 16 20 O -0.31 -2.66 10.00 -19.60 -0.20 -2.86 16 21 C 0.10 0.82 6.69 -39.18 -0.26 0.56 16 22 C -0.18 -1.08 9.04 -39.45 -0.36 -1.43 16 23 C -0.09 -0.42 10.04 -39.59 -0.40 -0.81 16 24 C -0.13 -0.60 10.04 -39.57 -0.40 -1.00 16 25 C -0.12 -0.70 10.02 -39.54 -0.40 -1.09 16 26 C 0.07 0.57 7.31 -39.30 -0.29 0.28 16 27 F -0.13 -1.36 17.11 2.25 0.04 -1.32 16 28 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.41 6.97 7.94 -40.82 -0.32 6.65 16 34 H 0.41 3.91 7.94 -40.82 -0.32 3.58 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.31 7.66 -51.93 -0.40 -0.08 16 40 H 0.07 0.31 7.66 -51.93 -0.40 -0.08 16 41 H 0.14 0.56 6.30 -52.48 -0.33 0.23 16 42 H 0.13 0.32 8.06 -52.49 -0.42 -0.11 16 43 H 0.13 0.29 8.06 -52.49 -0.42 -0.13 16 44 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 LS Contribution 388.49 15.07 5.85 5.85 Total: -1.00 -33.22 388.49 -7.90 -41.12 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -5.97 Total: 2.74 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -2.85 Total: 1.87 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.06 Total: -45.50 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.01 Total: -20.88 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.22 -7.90 -41.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256913078.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.550 kcal (2) G-P(sol) polarization free energy of solvation -33.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds