Wall clock time and date at job start Tue Mar 31 2020 20:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99975 * 2 1 4 4 H 1.48497 * 109.47023 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46752 * 299.99747 * 3 2 1 6 6 H 1.48495 * 109.47008 * 59.99900 * 3 2 1 7 7 C 1.37876 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00100 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99947 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47002 * 180.02562 * 9 7 2 11 11 N 1.46504 * 109.46958 * 180.02562 * 10 9 7 12 12 C 1.34775 * 120.00088 * 179.97438 * 11 10 9 13 13 O 1.21351 * 119.99936 * 0.02562 * 12 11 10 14 14 C 1.49452 * 119.99928 * 179.97438 * 12 11 10 15 15 O 1.21343 * 119.99854 * 0.02562 * 14 12 11 16 16 N 1.34774 * 119.99510 * 180.02562 * 14 12 11 17 17 C 1.46504 * 119.99670 * 180.02562 * 16 14 12 18 18 C 1.52995 * 109.47329 * 179.97438 * 17 16 14 19 19 C 1.53004 * 109.47487 * 180.02562 * 18 17 16 20 20 O 1.42893 * 109.47267 * 180.02562 * 19 18 17 21 21 C 1.35956 * 117.00026 * 179.97438 * 20 19 18 22 22 C 1.38657 * 120.06128 * 359.97438 * 21 20 19 23 23 C 1.38184 * 119.96964 * 180.02562 * 22 21 20 24 24 C 1.38265 * 120.09281 * 359.97438 * 23 22 21 25 25 C 1.38248 * 120.12705 * 0.02562 * 24 23 22 26 26 C 1.38332 * 120.03366 * 359.97438 * 25 24 23 27 27 F 1.35103 * 120.05240 * 180.02562 * 26 25 24 28 28 H 0.97003 * 120.00041 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46357 * 60.00123 * 9 7 2 30 30 H 1.09001 * 109.47083 * 300.00429 * 9 7 2 31 31 H 1.08996 * 109.47265 * 59.99881 * 10 9 7 32 32 H 1.09001 * 109.47349 * 300.00017 * 10 9 7 33 33 H 0.97006 * 119.99607 * 0.02562 * 11 10 9 34 34 H 0.96992 * 120.00602 * 359.97438 * 16 14 12 35 35 H 1.09004 * 109.47195 * 59.99954 * 17 16 14 36 36 H 1.09001 * 109.46985 * 299.99979 * 17 16 14 37 37 H 1.09007 * 109.47098 * 60.00138 * 18 17 16 38 38 H 1.09001 * 109.47491 * 300.00185 * 18 17 16 39 39 H 1.08994 * 109.46599 * 59.99869 * 19 18 17 40 40 H 1.09001 * 109.46881 * 300.00527 * 19 18 17 41 41 H 1.08004 * 120.01774 * 0.03769 * 22 21 20 42 42 H 1.08000 * 119.95526 * 180.27319 * 23 22 21 43 43 H 1.08001 * 119.93128 * 179.97438 * 24 23 22 44 44 H 1.07998 * 119.98480 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0027 11 7 1.5128 -4.9308 0.0033 12 6 2.1867 -6.0980 0.0037 13 8 3.4002 -6.0980 0.0041 14 6 1.4394 -7.3923 0.0048 15 8 0.2260 -7.3922 0.0048 16 7 2.1134 -8.5594 0.0057 17 6 1.3809 -9.8282 0.0062 18 6 2.3750 -10.9911 0.0066 19 6 1.6101 -12.3162 0.0065 20 8 2.5387 -13.4023 0.0075 21 6 2.0190 -14.6586 0.0081 22 6 0.6446 -14.8418 0.0083 23 6 0.1185 -16.1196 0.0094 24 6 0.9608 -17.2161 0.0098 25 6 2.3318 -17.0380 0.0096 26 6 2.8641 -15.7612 0.0085 27 9 4.2038 -15.5867 0.0078 28 1 -0.4850 0.8401 -0.0004 29 1 0.6241 -2.5574 -0.8881 30 1 0.6247 -2.5563 0.8919 31 1 2.8720 -3.6035 0.8926 32 1 2.8720 -3.6051 -0.8873 33 1 0.5427 -4.9308 0.0026 34 1 3.0833 -8.5594 0.0053 35 1 0.7545 -9.8865 -0.8840 36 1 0.7539 -9.8854 0.8960 37 1 3.0018 -10.9330 0.8966 38 1 3.0017 -10.9337 -0.8834 39 1 0.9837 -12.3739 -0.8836 40 1 0.9831 -12.3738 0.8963 41 1 -0.0145 -13.9862 0.0073 42 1 -0.9520 -16.2620 0.0051 43 1 0.5468 -18.2136 0.0111 44 1 2.9875 -17.8961 0.0095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256913078.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:34 Heat of formation + Delta-G solvation = -164.677138 kcal Electronic energy + Delta-G solvation = -26608.222684 eV Core-core repulsion = 22246.137568 eV Total energy + Delta-G solvation = -4362.085116 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.83871 -41.71637 -41.03131 -39.69500 -38.57609 -37.11567 -36.46612 -34.84629 -33.29344 -31.69651 -31.66527 -30.69436 -28.06452 -26.90103 -25.00653 -23.82325 -23.34636 -22.77113 -22.52586 -21.39499 -19.71318 -19.31147 -18.58705 -18.19268 -17.81627 -17.65552 -17.54591 -17.15701 -16.62056 -16.54417 -16.49545 -16.12129 -15.93386 -15.76168 -15.37888 -15.13292 -14.98665 -14.76530 -14.42183 -14.31328 -13.83750 -13.42861 -13.26651 -13.24245 -12.96473 -12.90653 -12.80170 -12.63555 -12.51727 -12.48530 -12.29628 -11.98867 -11.71060 -11.68937 -11.41938 -10.73298 -10.62282 -10.38323 -10.20150 -9.94773 -9.23569 -8.23724 -6.34760 0.12399 0.26347 0.30557 1.24077 1.42378 1.43767 1.56577 1.99888 2.10699 2.40317 2.60693 2.70410 3.11571 3.23564 3.41739 3.71457 3.82552 3.82660 3.87743 4.04774 4.21092 4.32472 4.34151 4.37478 4.38744 4.45071 4.52671 4.57180 4.81251 4.95106 4.95238 4.99156 5.07599 5.09764 5.13094 5.26205 5.42503 5.43850 5.54958 5.70280 5.75383 5.90426 6.12975 6.27242 6.34028 6.68743 6.79546 6.91604 7.35039 8.88494 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.043119 B = 0.001289 C = 0.001254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.206014 B =21709.914749 C =22322.767903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.018 3.982 10 C 0.137 3.863 11 N -0.688 5.688 12 C 0.499 3.501 13 O -0.550 6.550 14 C 0.517 3.483 15 O -0.539 6.539 16 N -0.689 5.689 17 C 0.122 3.878 18 C -0.124 4.124 19 C 0.060 3.940 20 O -0.330 6.330 21 C 0.080 3.920 22 C -0.187 4.187 23 C -0.086 4.086 24 C -0.128 4.128 25 C -0.119 4.119 26 C 0.028 3.972 27 F -0.152 7.152 28 H 0.265 0.735 29 H 0.008 0.992 30 H 0.008 0.992 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.415 0.585 34 H 0.421 0.579 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.158 0.842 42 H 0.162 0.838 43 H 0.163 0.837 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.265 -37.388 0.014 37.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.583 4.583 8 H 0.083 0.917 9 C -0.020 4.020 10 C 0.014 3.986 11 N -0.339 5.339 12 C 0.280 3.720 13 O -0.429 6.429 14 C 0.297 3.703 15 O -0.416 6.416 16 N -0.342 5.342 17 C 0.000 4.000 18 C -0.162 4.162 19 C -0.015 4.015 20 O -0.245 6.245 21 C 0.034 3.966 22 C -0.205 4.205 23 C -0.104 4.104 24 C -0.146 4.146 25 C -0.138 4.138 26 C 0.009 3.991 27 F -0.131 7.131 28 H 0.074 0.926 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.251 0.749 34 H 0.258 0.742 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.175 0.825 42 H 0.179 0.821 43 H 0.181 0.819 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.159 -37.197 0.016 37.197 hybrid contribution 0.473 1.275 -0.001 1.360 sum 0.314 -35.921 0.014 35.923 Atomic orbital electron populations 1.70079 1.07681 1.27952 1.51042 1.25892 0.95742 1.03204 0.94396 0.85370 0.79084 0.78661 0.77763 1.18632 1.20384 1.20397 1.21485 0.93759 0.91584 1.51468 0.91746 1.19186 0.94357 0.91907 0.96514 1.21482 0.95102 0.80810 1.01158 1.46068 1.11937 1.05458 1.70468 1.20362 0.87562 0.85797 0.78320 1.90727 1.14057 1.87915 1.50174 1.19878 0.87170 0.85370 0.77913 1.90763 1.13953 1.87737 1.49188 1.45659 1.12036 1.04592 1.71926 1.21392 0.94432 0.80124 1.04097 1.21575 0.98563 0.90778 1.05261 1.22831 0.91495 0.83509 1.03700 1.86058 1.37273 1.12337 1.88823 1.19258 0.93088 0.84040 1.00217 1.21525 0.91975 1.00761 1.06261 1.21498 1.02031 0.90993 0.95894 1.21368 0.91511 1.01130 1.00587 1.21344 0.97695 0.94368 1.00384 1.17540 0.76534 0.93544 1.11523 1.91453 1.30658 1.96350 1.94670 0.92578 0.97334 0.97346 0.92017 0.92028 0.74867 0.74154 0.89817 0.89808 0.89589 0.89594 0.89737 0.89747 0.82490 0.82068 0.81913 0.82599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.52 13.29 21.45 0.28 -54.24 16 2 C 0.01 0.36 5.46 84.65 0.46 0.82 16 3 Si 0.97 43.20 29.54 68.60 2.03 45.23 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.54 -29.93 9.11 25.60 0.23 -29.70 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.02 0.90 5.09 29.85 0.15 1.05 16 10 C 0.14 5.70 5.61 86.38 0.48 6.19 16 11 N -0.69 -24.61 5.55 -464.41 -2.58 -27.19 16 12 C 0.50 16.44 7.89 87.27 0.69 17.12 16 13 O -0.55 -19.98 16.48 -3.25 -0.05 -20.04 16 14 C 0.52 14.13 7.89 87.27 0.69 14.82 16 15 O -0.54 -16.79 16.48 -3.22 -0.05 -16.84 16 16 N -0.69 -13.32 5.55 -464.41 -2.58 -15.90 16 17 C 0.12 1.61 5.67 86.38 0.49 2.11 16 18 C -0.12 -1.29 5.70 30.59 0.17 -1.12 16 19 C 0.06 0.59 4.74 71.98 0.34 0.93 16 20 O -0.33 -5.70 10.00 -93.06 -0.93 -6.63 16 21 C 0.08 1.29 6.69 22.53 0.15 1.44 16 22 C -0.19 -1.87 9.04 22.36 0.20 -1.67 16 23 C -0.09 -0.58 10.04 22.26 0.22 -0.35 16 24 C -0.13 -0.88 10.04 22.28 0.22 -0.65 16 25 C -0.12 -1.33 10.02 22.29 0.22 -1.11 16 26 C 0.03 0.49 7.31 22.45 0.16 0.66 16 27 F -0.15 -3.37 17.11 44.97 0.77 -2.60 16 28 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 29 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.01 0.43 8.14 -2.39 -0.02 0.42 16 31 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.41 14.22 7.94 -92.70 -0.74 13.48 16 34 H 0.42 7.31 7.94 -92.71 -0.74 6.57 16 35 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.08 0.59 7.66 -2.39 -0.02 0.57 16 40 H 0.08 0.59 7.66 -2.39 -0.02 0.57 16 41 H 0.16 0.87 6.30 -2.91 -0.02 0.85 16 42 H 0.16 0.14 8.06 -2.91 -0.02 0.12 16 43 H 0.16 0.14 8.06 -2.91 -0.02 0.12 16 44 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 Total: -1.00 -71.95 388.49 1.37 -70.58 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -0.43 Total: 17.08 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 4.90 Total: 10.53 kcal Atomic # 7 Polarization: -92.45 SS G_CDS: -4.87 Total: -97.32 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -1.04 Total: -43.51 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.77 Total: -2.60 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -71.95 1.37 -70.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256913078.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.095 kcal (2) G-P(sol) polarization free energy of solvation -71.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds