Wall clock time and date at job start Tue Mar 31 2020 20:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.46692 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46740 * 299.99561 * 3 2 1 6 6 H 1.48497 * 109.47025 * 59.99919 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00339 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47324 * 180.02562 * 9 7 2 11 11 C 1.34779 * 120.00169 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99922 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00037 * 180.02562 * 11 10 9 14 14 O 1.45206 * 109.47021 * 180.02562 * 13 11 10 15 15 C 1.34751 * 116.99792 * 179.97438 * 14 13 11 16 16 O 1.21513 * 119.99958 * 0.02562 * 15 14 13 17 17 C 1.47382 * 119.99575 * 180.02562 * 15 14 13 18 18 C 1.36670 * 125.77815 * 179.72082 * 17 15 14 19 19 N 1.34780 * 106.83629 * 179.83850 * 18 17 15 20 20 C 1.46503 * 126.58874 * 180.15205 * 19 18 17 21 21 C 1.53001 * 109.47289 * 125.33370 * 20 19 18 22 22 H 1.08995 * 110.43887 * 305.70095 * 21 20 19 23 23 C 1.54807 * 110.48628 * 183.15419 * 21 20 19 24 24 C 1.55226 * 101.99044 * 220.52013 * 23 21 20 25 25 O 1.44381 * 103.56446 * 36.88297 * 24 23 21 26 26 C 1.43747 * 106.97379 * 320.01250 * 25 24 23 27 27 N 1.40207 * 106.82949 * 0.41036 * 19 18 17 28 28 N 1.28768 * 108.38282 * 359.73721 * 27 19 18 29 29 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47476 * 59.99992 * 9 7 2 31 31 H 1.09004 * 109.47043 * 300.00066 * 9 7 2 32 32 H 0.96996 * 119.99986 * 0.02562 * 10 9 7 33 33 H 1.09000 * 109.47247 * 60.00371 * 13 11 10 34 34 H 1.09001 * 109.47358 * 299.99798 * 13 11 10 35 35 H 1.08005 * 126.58158 * 359.97438 * 18 17 15 36 36 H 1.09003 * 109.47024 * 245.33771 * 20 19 18 37 37 H 1.08998 * 109.46947 * 5.33513 * 20 19 18 38 38 H 1.09006 * 110.91152 * 338.64433 * 23 21 20 39 39 H 1.09004 * 110.90598 * 102.24276 * 23 21 20 40 40 H 1.09003 * 110.51974 * 278.39004 * 24 23 21 41 41 H 1.08995 * 110.77844 * 155.50329 * 24 23 21 42 42 H 1.08998 * 109.88266 * 267.08969 * 26 25 24 43 43 H 1.09006 * 110.00423 * 146.01025 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2030 -3.6127 0.0027 11 6 1.7538 -4.8834 0.0044 12 8 0.5613 -5.1050 0.0046 13 6 2.7330 -6.0288 0.0060 14 8 2.0070 -7.2863 0.0070 15 6 2.7409 -8.4164 0.0079 16 8 3.9544 -8.3528 0.0084 17 6 2.0718 -9.7296 0.0084 18 6 2.6969 -10.9449 0.0040 19 7 1.7283 -11.8821 0.0099 20 6 1.9187 -13.3347 0.0113 21 6 1.1632 -13.9470 1.1925 22 1 1.4621 -13.4682 2.1249 23 6 1.4128 -15.4732 1.2628 24 6 0.0045 -16.0138 1.6285 25 8 -0.8906 -15.1516 0.8937 26 6 -0.3583 -13.8193 0.9842 27 7 0.5034 -11.2000 0.0084 28 7 0.7431 -9.9348 0.0076 29 1 -0.4851 0.8400 -0.0004 30 1 0.6240 -2.5576 -0.8880 31 1 0.6247 -2.5563 0.8920 32 1 3.1566 -3.4355 0.0029 33 1 3.3596 -5.9699 0.8959 34 1 3.3598 -5.9723 -0.8841 35 1 3.7625 -11.1206 -0.0009 36 1 1.5364 -13.7522 -0.9203 37 1 2.9808 -13.5618 0.1023 38 1 1.7385 -15.8591 0.2967 39 1 2.1380 -15.7133 2.0404 40 1 -0.1720 -15.9260 2.7006 41 1 -0.1083 -17.0487 1.3056 42 1 -0.8057 -13.2980 1.8304 43 1 -0.5618 -13.2731 0.0630 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261812142.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:34 Heat of formation + Delta-G solvation = -64.546150 kcal Electronic energy + Delta-G solvation = -27543.326891 eV Core-core repulsion = 23205.503741 eV Total energy + Delta-G solvation = -4337.823149 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.67362 -40.37618 -39.98513 -38.62726 -36.38207 -35.84079 -34.20294 -32.88027 -32.37954 -31.55030 -30.07997 -29.12162 -27.25011 -26.66675 -24.41621 -23.46668 -22.62554 -22.44474 -21.49606 -20.88343 -19.89545 -18.61579 -17.46664 -17.26625 -17.06701 -16.92915 -16.62799 -16.20611 -15.93119 -15.48640 -15.42117 -15.18924 -15.03713 -14.58222 -14.39734 -14.20243 -13.83153 -13.38626 -13.12071 -12.94322 -12.71310 -12.47835 -12.27055 -12.03799 -11.96985 -11.88399 -11.73650 -11.56229 -11.46787 -10.97895 -10.92684 -10.90755 -10.81574 -10.69872 -10.32238 -10.18666 -9.75688 -9.39245 -9.12666 -8.75759 -7.94345 -6.16847 -4.24179 0.62559 1.25650 1.45058 2.33912 2.77893 3.23364 3.24456 3.31277 3.32937 3.34346 3.57534 3.66525 3.74084 3.99212 4.01221 4.28343 4.31779 4.37275 4.38861 4.51411 4.55287 4.59200 4.82061 4.88091 5.03659 5.09468 5.11755 5.19209 5.20758 5.25525 5.29572 5.36615 5.38537 5.50511 5.82862 6.19801 6.31104 7.26447 7.34226 7.42690 7.50074 7.63715 7.71228 7.95122 8.54140 8.75070 9.01292 9.42173 10.93336 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.035060 B = 0.001564 C = 0.001512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.447501 B =17893.826977 C =18519.414774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.250 3.750 10 N -0.707 5.707 11 C 0.499 3.501 12 O -0.529 6.529 13 C 0.049 3.951 14 O -0.308 6.308 15 C 0.557 3.443 16 O -0.509 6.509 17 C -0.083 4.083 18 C 0.104 3.896 19 N -0.364 5.364 20 C 0.129 3.871 21 C -0.138 4.138 22 H 0.094 0.906 23 C -0.146 4.146 24 C 0.045 3.955 25 O -0.376 6.376 26 C 0.050 3.950 27 N -0.060 5.060 28 N -0.168 5.168 29 H 0.266 0.734 30 H 0.030 0.970 31 H 0.030 0.970 32 H 0.392 0.608 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.210 0.790 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.096 0.904 42 H 0.065 0.935 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.530 -34.389 2.019 35.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.130 3.870 10 N -0.358 5.358 11 C 0.281 3.719 12 O -0.405 6.405 13 C -0.029 4.029 14 O -0.221 6.221 15 C 0.399 3.601 16 O -0.397 6.397 17 C -0.220 4.220 18 C -0.053 4.053 19 N -0.148 5.148 20 C 0.009 3.991 21 C -0.158 4.158 22 H 0.112 0.888 23 C -0.185 4.185 24 C -0.032 4.032 25 O -0.295 6.295 26 C -0.027 4.027 27 N -0.041 5.041 28 N -0.042 5.042 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.225 0.775 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.226 0.774 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.080 0.920 41 H 0.114 0.886 42 H 0.083 0.917 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.126 -34.573 1.904 35.351 hybrid contribution 2.411 1.177 0.164 2.688 sum 9.537 -33.396 2.069 34.793 Atomic orbital electron populations 1.69985 1.06113 1.27272 1.48775 1.24954 0.94920 0.99478 0.94656 0.86340 0.79802 0.82886 0.77751 1.19616 1.20789 1.20799 1.21248 0.93360 0.90304 1.53359 0.91712 1.19183 0.88183 0.81514 0.98085 1.46344 1.11459 1.05280 1.72675 1.19852 0.89141 0.83939 0.78956 1.90741 1.16238 1.84440 1.49103 1.22954 0.94465 0.80708 1.04752 1.86713 1.39143 1.13485 1.82733 1.19427 0.84572 0.83519 0.72606 1.90874 1.13883 1.87740 1.47171 1.20237 0.90115 0.92219 1.19408 1.23320 0.97275 0.87556 0.97112 1.50636 1.06202 1.08378 1.49586 1.22218 1.02998 0.72966 1.00966 1.22918 0.97292 0.97016 0.98563 0.88763 1.23205 0.98992 0.92688 1.03584 1.23598 0.87314 0.95589 0.96658 1.88933 1.48726 1.17894 1.73916 1.23360 0.90498 0.84891 1.03918 1.82076 1.01857 0.97707 1.22443 1.74937 1.13769 1.08036 1.07504 0.92440 0.95212 0.95234 0.77469 0.88253 0.88251 0.77350 0.87547 0.87005 0.89712 0.89373 0.91963 0.88579 0.91685 0.88089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.07 13.29 55.43 0.74 -25.34 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.91 20.80 29.54 -169.99 -5.02 15.77 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.54 -14.69 9.28 -34.44 -0.32 -15.01 16 8 H 0.06 1.62 7.60 -52.49 -0.40 1.23 16 9 C 0.25 6.64 5.43 -5.20 -0.03 6.61 16 10 N -0.71 -14.79 5.55 -61.47 -0.34 -15.13 16 11 C 0.50 10.25 7.91 -10.99 -0.09 10.16 16 12 O -0.53 -13.44 16.50 -14.11 -0.23 -13.67 16 13 C 0.05 0.75 5.95 36.01 0.21 0.97 16 14 O -0.31 -5.25 9.76 -47.31 -0.46 -5.71 16 15 C 0.56 7.93 7.96 34.45 0.27 8.21 16 16 O -0.51 -7.20 16.65 -19.28 -0.32 -7.52 16 17 C -0.08 -1.02 7.02 -83.57 -0.59 -1.61 16 18 C 0.10 0.79 11.27 -16.82 -0.19 0.60 16 19 N -0.36 -2.62 3.69 -61.05 -0.23 -2.85 16 20 C 0.13 0.39 5.70 -4.04 -0.02 0.37 16 21 C -0.14 -0.54 3.27 -89.09 -0.29 -0.83 16 22 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 23 C -0.15 -0.31 6.73 -24.60 -0.17 -0.48 16 24 C 0.05 0.19 7.72 38.34 0.30 0.49 16 25 O -0.38 -3.04 11.52 -35.23 -0.41 -3.44 16 26 C 0.05 0.35 6.60 37.73 0.25 0.60 16 27 N -0.06 -0.69 11.62 60.35 0.70 0.01 16 28 N -0.17 -2.41 12.39 32.83 0.41 -2.00 16 29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.39 6.82 8.32 -40.82 -0.34 6.48 16 33 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.21 0.72 8.06 -52.48 -0.42 0.30 16 36 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.11 -0.03 8.08 -51.93 -0.42 -0.45 16 38 H 0.08 0.10 7.87 -51.93 -0.41 -0.31 16 39 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 40 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.10 0.83 6.38 -51.93 -0.33 0.50 16 LS Contribution 378.16 15.07 5.70 5.70 Total: -1.00 -37.67 378.16 -5.90 -43.58 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -5.68 Total: -1.15 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: -0.75 Total: 11.75 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 1.28 Total: -45.30 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -1.42 Total: -30.34 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.67 -5.90 -43.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261812142.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.971 kcal (2) G-P(sol) polarization free energy of solvation -37.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds